Conservation of cofitness between SMc03158 and SMc00458 in Sinorhizobium meliloti 1021

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sinorhizobium meliloti 1021 1.0 SMc03158 ABC transporter permease 1.0 SMc00458 transcriptional regulator 0.69 2
Rhodopseudomonas palustris CGA009 0.69 TX73_007325 ABC transporter permease 0.78 TX73_009870 response regulator transcription factor low > 86
Agrobacterium fabrum C58 0.69 Atu4488 ABC transporter permease 0.91 Atu0970 two component response regulator — —
Rhizobium sp. OAE497 0.69 ABIE40_RS23110 methionine ABC transporter permease 0.89 ABIE40_RS05660 response regulator transcription factor low > 107
Bosea sp. OAE506 0.62 ABIE41_RS03515 methionine ABC transporter permease 0.78 ABIE41_RS21475 response regulator transcription factor low > 77
Rhodospirillum rubrum S1H 0.62 Rru_A2418 Binding-protein-dependent transport systems inner membrane component (NCBI) 0.59 Rru_A3187 Two component Transcriptional regulator, Winged helix family (NCBI) low > 58
Azospirillum brasilense Sp245 0.58 AZOBR_RS19470 DL-methionine transporter permease subunit 0.69 AZOBR_RS18790 transcriptional regulator — —
Azospirillum sp. SherDot2 0.55 MPMX19_05548 D-methionine transport system permease protein MetI 0.68 MPMX19_04078 Virulence transcriptional regulatory protein PhoP low > 112
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS04975 methionine ABC transporter permease 0.40 HSERO_RS21985 transcriptional regulator low > 78
Cupriavidus basilensis FW507-4G11 0.52 RR42_RS04560 methionine ABC transporter permease 0.41 RR42_RS30345 XRE family transcriptional regulator low > 128
Ralstonia solanacearum PSI07 0.51 RPSI07_RS19625 ABC transporter permease 0.39 RPSI07_RS10475 DNA-binding response regulator — —
Pseudomonas sp. S08-1 0.49 OH686_23815 Methionine ABC transporter permease protein 0.46 OH686_00055 Two-component system response regulator QseB low > 80
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_04640 methionine ABC transporter permease 0.53 CSW01_08235 DNA-binding response regulator low > 62
Pseudomonas sp. RS175 0.47 PFR28_04846 D-methionine transport system permease protein MetI 0.44 PFR28_02847 Transcriptional regulatory protein QseB low > 88
Fusobacterium nucleatum SB010 0.47 HUW76_06265 ABC transporter permease 0.40 HUW76_07205 response regulator transcription factor low > 35
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS01170 ABC transporter permease 0.46 PFLU_RS10435 response regulator transcription factor low > 109
Pseudomonas fluorescens SBW25 0.47 PFLU_RS01170 ABC transporter permease 0.46 PFLU_RS10435 response regulator transcription factor low > 109
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_3928 Methionine ABC transporter permease protein 0.44 Pf6N2E2_41 Two-component system response regulator QseB low > 103
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_10280 ABC transporter permease 0.44 AO356_21280 transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_11630 ABC transporter permease 0.44 AO353_19775 transcriptional regulator low > 101
Pseudomonas fluorescens GW456-L13 0.46 PfGW456L13_454 Methionine ABC transporter permease protein 0.44 PfGW456L13_2451 Two-component system response regulator QseB low > 87
Klebsiella michiganensis M5al 0.44 BWI76_RS15035 metal ABC transporter permease 0.41 BWI76_RS11280 two-component system response regulator PhoP — —
Rahnella sp. WP5 0.44 EX31_RS15585 ABC transporter permease 0.42 EX31_RS24560 two-component system response regulator PhoP low > 89
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_0349 Binding-protein-dependent transport systems inner membrane component 0.46 Psyr_3212 Response regulator receiver:Transcriptional regulatory protein, C-terminal low > 86
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_0349 Binding-protein-dependent transport systems inner membrane component 0.46 Psyr_3212 Response regulator receiver:Transcriptional regulatory protein, C-terminal low > 86
Pseudomonas putida KT2440 0.43 PP_0219 L,D-methionine D-methionine ABC transporter - permease subunit 0.46 PP_2347 DNA-binding response regulator low > 96
Pseudomonas simiae WCS417 0.43 PS417_01060 ABC transporter permease 0.46 PS417_10270 transcriptional regulator low > 88
Enterobacter sp. TBS_079 0.43 MPMX20_01956 Methionine import system permease protein MetP 0.41 MPMX20_01811 Transcriptional regulatory protein PhoP low > 85
Enterobacter asburiae PDN3 0.43 EX28DRAFT_1675 ABC-type metal ion transport system, permease component 0.41 EX28DRAFT_3057 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 76
Marinobacter adhaerens HP15 0.42 HP15_3904 binding-protein-dependent transport systems inner membrane component 0.49 HP15_2937 two component transcriptional regulator, winged helix family low > 73
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_03555 metP metal ABC transporter permease 0.54 OKGIIK_00635 ompR DNA-binding response regulator — —
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_1703 Methionine ABC transporter permease protein 0.45 Pf1N1B4_105 Two-component system response regulator QseB — —
Pantoea sp. MT58 0.41 IAI47_20550 ABC transporter permease 0.41 IAI47_11930 two-component system response regulator PhoP low > 76
Serratia liquefaciens MT49 0.41 IAI46_07080 ABC transporter permease 0.42 IAI46_10395 two-component system response regulator PhoP low > 86
Pectobacterium carotovorum WPP14 0.40 HER17_RS04375 methionine ABC transporter permease MetI 0.42 HER17_RS11640 two-component system response regulator PhoP low > 75
Dickeya dadantii 3937 0.40 DDA3937_RS07980 ABC transporter permease subunit 0.39 DDA3937_RS11500 two-component system response regulator PhoP low > 74
Dechlorosoma suillum PS 0.39 Dsui_2067 ABC-type metal ion transport system, permease component 0.41 Dsui_2248 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain low > 51
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.4602.1 Methionine ABC transporter permease protein 0.56 Xcc-8004.5008.1 Two-component system regulatory protein — —
Escherichia coli ECRC98 0.39 JDDGAC_13650 metI D-methionine transport system permease protein MetI 0.40 JDDGAC_06635 phoP two-component system response regulator PhoP low > 86
Escherichia coli ECRC99 0.39 KEDOAH_18100 metI D-methionine transport system permease protein MetI 0.40 KEDOAH_24815 phoP two-component system response regulator PhoP — —
Escherichia coli ECRC101 0.39 MCAODC_00570 metI D-methionine transport system permease protein MetI 0.40 MCAODC_22355 phoP two-component system response regulator PhoP low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_03463 D-methionine transport system permease protein MetI 0.41 OHPLBJKB_02538 Transcriptional regulatory protein PhoP low > 73
Escherichia coli ECRC62 0.39 BNILDI_09270 metI D-methionine transport system permease protein MetI 0.41 BNILDI_19080 phoP two-component system response regulator PhoP low > 75
Escherichia coli BW25113 0.39 b0198 metI DL-methionine transporter subunit (NCBI) 0.41 b1130 phoP DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) low > 76
Escherichia fergusonii Becca 0.39 EFB2_03845 D-methionine transport system permease protein MetI 0.41 EFB2_02845 Transcriptional regulatory protein PhoP 0.52 5
Escherichia coli BL21 0.39 ECD_00197 DL-methionine transporter subunit 0.41 ECD_01128 response regulator in two-component regulatory system with PhoQ — —
Escherichia coli ECOR27 0.39 NOLOHH_02400 metI D-methionine transport system permease protein MetI 0.41 NOLOHH_20915 phoP two-component system response regulator PhoP low > 75
Escherichia coli Nissle 1917 0.39 ECOLIN_RS01090 methionine ABC transporter permease MetI 0.41 ECOLIN_RS06610 two-component system response regulator PhoP — —
Escherichia coli ECRC102 0.39 NIAGMN_07905 metI D-methionine transport system permease protein MetI 0.40 NIAGMN_24875 phoP two-component system response regulator PhoP — —
Escherichia coli ECRC100 0.39 OKFHMN_10055 metI D-methionine transport system permease protein MetI 0.40 OKFHMN_00730 phoP two-component system response regulator PhoP 0.71 5
Escherichia coli ECOR38 0.39 HEPCGN_07995 metI D-methionine transport system permease protein MetI 0.41 HEPCGN_24200 phoP two-component system response regulator PhoP low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.38 GFF22 Methionine ABC transporter permease protein 0.41 GFF3138 Two-component system response regulator QseB low > 78
Variovorax sp. SCN45 0.38 GFF3113 Methionine ABC transporter permease protein 0.42 GFF4069 DNA-binding heavy metal response regulator low > 127
Rhodanobacter denitrificans MT42 0.37 LRK55_RS14445 methionine ABC transporter permease 0.53 LRK55_RS05740 response regulator transcription factor — —
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS14730 ABC transporter permease 0.53 LRK54_RS05985 response regulator transcription factor 0.56 12
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS00470 methionine ABC transporter permease 0.54 ABZR86_RS18360 response regulator transcription factor low > 74
Castellaniella sp019104865 MT123 0.37 ABCV34_RS09540 methionine ABC transporter permease 0.64 ABCV34_RS15610 response regulator transcription factor low > 48
Pseudomonas stutzeri RCH2 0.36 Psest_4315 ABC-type metal ion transport system, permease component 0.48 Psest_3533 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 67
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_02750 ABC transporter permease protein 0.65 CCNA_02854 two-component response regulator low > 67
Caulobacter crescentus NA1000 0.33 CCNA_02750 ABC transporter permease protein 0.65 CCNA_02854 two-component response regulator low > 66
Erwinia tracheiphila SCR3 0.33 LU632_RS19825 methionine ABC transporter permease MetI 0.41 LU632_RS14590 phoP two-component system response regulator PhoP low > 74

Not shown: 15 genomes with orthologs for SMc03158 only; 14 genomes with orthologs for SMc00458 only