Conservation of cofitness between RR42_RS04710 and RR42_RS37440 in Cupriavidus basilensis FW507-4G11

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS04710 50S rRNA methyltransferase 1.0 RR42_RS37440 phosphogluconate dehydratase 0.32 6
Ralstonia sp. UNC404CL21Col 0.85 ABZR87_RS15430 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.77 ABZR87_RS22920 phosphogluconate dehydratase low > 80
Ralstonia solanacearum IBSBF1503 0.84 RALBFv3_RS03565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.77 RALBFv3_RS16385 phosphogluconate dehydratase low > 76
Ralstonia solanacearum UW163 0.84 UW163_RS10105 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.77 UW163_RS17125 phosphogluconate dehydratase — —
Ralstonia solanacearum GMI1000 0.84 RS_RS11015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.77 RS_RS24620 phosphogluconate dehydratase — —
Ralstonia solanacearum PSI07 0.84 RPSI07_RS13660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.78 RPSI07_RS07320 phosphogluconate dehydratase low > 81
Herbaspirillum seropedicae SmR1 0.76 HSERO_RS17780 50S rRNA methyltransferase 0.63 HSERO_RS05520 phosphogluconate dehydratase — —
Variovorax sp. OAS795 0.57 ABID97_RS16715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.56 ABID97_RS21300 phosphogluconate dehydratase low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.55 GFF4529 LSU m3Psi1915 methyltransferase RlmH 0.60 GFF5495 Phosphogluconate dehydratase (EC 4.2.1.12) — —
Marinobacter adhaerens HP15 0.53 HP15_604 conserved hypothetical protein CHP00246 0.57 HP15_2174 6-phosphogluconate dehydratase low > 73
Shewanella loihica PV-4 0.50 Shew_2934 SPOUT methyltransferase superfamily protein (RefSeq) 0.60 Shew_2046 phosphogluconate dehydratase (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_04865 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.50 CSW01_01480 phosphogluconate dehydratase low > 62
Rhodanobacter denitrificans MT42 0.48 LRK55_RS02450 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.57 LRK55_RS07610 phosphogluconate dehydratase — —
Shewanella amazonensis SB2B 0.48 Sama_2587 rRNA large subunit methyltransferase (RefSeq) 0.58 Sama_1810 phosphogluconate dehydratase (RefSeq) — —
Rhodanobacter denitrificans FW104-10B01 0.48 LRK54_RS02695 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.57 LRK54_RS07880 phosphogluconate dehydratase — —
Escherichia coli BW25113 0.48 b0636 ybeA hypothetical protein (NCBI) 0.59 b1851 edd phosphogluconate dehydratase (NCBI) low > 76
Klebsiella michiganensis M5al 0.48 BWI76_RS08040 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.59 BWI76_RS18100 phosphogluconate dehydratase low > 92
Escherichia coli HS(pFamp)R (ATCC 700891) 0.48 OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H 0.59 OHPLBJKB_01878 Phosphogluconate dehydratase — —
Escherichia coli BL21 0.48 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent 0.59 ECD_01822 6-phosphogluconate dehydratase — —
Escherichia coli Nissle 1917 0.48 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.59 ECOLIN_RS10310 phosphogluconate dehydratase — —
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_09750 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.56 OKGIIK_14370 edd phosphogluconate dehydratase — —
Serratia liquefaciens MT49 0.47 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.60 IAI46_23175 phosphogluconate dehydratase low > 86
Rahnella sp. WP5 0.47 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.60 EX31_RS16630 phosphogluconate dehydratase low > 89
Escherichia coli ECRC62 0.47 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.59 BNILDI_15645 edd phosphogluconate dehydratase — —
Escherichia coli ECOR27 0.47 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.59 NOLOHH_16850 edd phosphogluconate dehydratase low > 75
Escherichia coli ECRC100 0.47 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.59 OKFHMN_26340 edd phosphogluconate dehydratase low > 80
Escherichia fergusonii Becca 0.47 EFB2_03456 Ribosomal RNA large subunit methyltransferase H 0.59 EFB2_02092 Phosphogluconate dehydratase low > 86
Escherichia coli ECRC98 0.47 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.59 JDDGAC_00915 edd phosphogluconate dehydratase — —
Shewanella oneidensis MR-1 0.47 SO1169 conserved hypothetical protein TIGR00246 (NCBI ptt file) 0.60 SO2487 edd 6-phosphogluconate dehydratase (NCBI ptt file) 0.30 74
Escherichia coli ECRC102 0.47 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.59 NIAGMN_01720 edd phosphogluconate dehydratase — —
Enterobacter sp. TBS_079 0.47 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H 0.59 MPMX20_02756 Phosphogluconate dehydratase low > 85
Escherichia coli ECRC101 0.47 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.59 MCAODC_19065 edd phosphogluconate dehydratase low > 87
Escherichia coli ECRC99 0.47 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.59 KEDOAH_01765 edd phosphogluconate dehydratase — —
Enterobacter asburiae PDN3 0.47 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH 0.59 EX28DRAFT_0705 6-phosphogluconate dehydratase (EC 4.2.1.12) — —
Escherichia coli ECOR38 0.47 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.59 HEPCGN_04745 edd phosphogluconate dehydratase low > 87
Dyella japonica UNC79MFTsu3.2 0.47 ABZR86_RS09055 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.57 ABZR86_RS14690 phosphogluconate dehydratase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF4549 LSU m3Psi1915 methyltransferase RlmH 0.60 GFF1630 Phosphogluconate dehydratase (EC 4.2.1.12) low > 78
Shewanella sp. ANA-3 0.47 Shewana3_0996 rRNA large subunit methyltransferase (RefSeq) 0.60 Shewana3_2149 phosphogluconate dehydratase (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.46 MIT1002_01852 Ribosomal RNA large subunit methyltransferase H 0.60 MIT1002_02405 Phosphogluconate dehydratase — —
Pseudomonas fluorescens SBW25 0.43 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.62 PFLU_RS24330 phosphogluconate dehydratase low > 109
Pseudomonas simiae WCS417 0.43 PS417_24730 50S rRNA methyltransferase 0.61 PS417_22690 phosphogluconate dehydratase — —
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.62 PFLU_RS24330 phosphogluconate dehydratase low > 109
Pseudomonas sp. RS175 0.43 PFR28_03869 Ribosomal RNA large subunit methyltransferase H 0.61 PFR28_00561 Phosphogluconate dehydratase low > 88
Lysobacter sp. OAE881 0.43 ABIE51_RS06755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.55 ABIE51_RS01610 phosphogluconate dehydratase low > 62
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_4996 LSU m3Psi1915 methyltransferase RlmH 0.61 Pf6N2E2_2898 Phosphogluconate dehydratase (EC 4.2.1.12) — —
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_15305 50S rRNA methyltransferase 0.61 AO356_05220 phosphogluconate dehydratase — —
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_2691 LSU m3Psi1915 methyltransferase RlmH 0.60 Pf1N1B4_601 Phosphogluconate dehydratase (EC 4.2.1.12) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_4366 Protein of unknown function DUF163 0.60 Psyr_1109 6-phosphogluconate dehydratase low > 86
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_4366 Protein of unknown function DUF163 0.60 Psyr_1109 6-phosphogluconate dehydratase — —
Pseudomonas fluorescens FW300-N2E3 0.42 AO353_06480 50S rRNA methyltransferase 0.61 AO353_03420 phosphogluconate dehydratase low > 101
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_1359 LSU m3Psi1915 methyltransferase RlmH 0.60 PfGW456L13_1889 Phosphogluconate dehydratase (EC 4.2.1.12) low > 87
Pseudomonas stutzeri RCH2 0.42 Psest_0511 rRNA large subunit m3Psi methyltransferase RlmH 0.61 Psest_1892 6-phosphogluconate dehydratase 0.20 24
Pseudomonas putida KT2440 0.42 PP_4808 23S rRNA m3psi1915 methyltransferase 0.61 PP_1010 phosphogluconate dehydratase — —
Sinorhizobium meliloti 1021 0.34 SMc03781 rRNA large subunit methyltransferase 0.59 SMc03068 phosphogluconate dehydratase low > 103
Agrobacterium fabrum C58 0.33 Atu2776 hypothetical protein 0.61 Atu0598 phosphogluconate dehydratase low > 89
Rhizobium sp. OAE497 0.33 ABIE40_RS18965 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.62 ABIE40_RS03190 phosphogluconate dehydratase low > 107

Not shown: 39 genomes with orthologs for RR42_RS04710 only; 4 genomes with orthologs for RR42_RS37440 only