Conservation of cofitness between RR42_RS00835 and RR42_RS13170 in Cupriavidus basilensis FW507-4G11

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS00835 DSBA oxidoreductase 1.0 RR42_RS13170 23S rRNA methyltransferase 0.40 4
Ralstonia solanacearum GMI1000 0.63 RS_RS01400 thiol:disulfide interchange protein DsbA/DsbL 0.80 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 80
Ralstonia solanacearum PSI07 0.62 RPSI07_RS22755 thiol:disulfide interchange protein DsbA/DsbL 0.80 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 81
Ralstonia solanacearum UW163 0.61 UW163_RS03020 thiol:disulfide interchange protein DsbA/DsbL 0.81 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Ralstonia solanacearum IBSBF1503 0.61 RALBFv3_RS10560 thiol:disulfide interchange protein DsbA/DsbL 0.81 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 76
Ralstonia sp. UNC404CL21Col 0.60 ABZR87_RS06350 thiol:disulfide interchange protein DsbA/DsbL 0.80 ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 80
Paraburkholderia bryophila 376MFSha3.1 0.54 H281DRAFT_02081 thiol:disulfide interchange protein DsbA 0.72 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase — —
Burkholderia phytofirmans PsJN 0.54 BPHYT_RS02280 DSBA oxidoreductase 0.72 BPHYT_RS09125 23S rRNA methyltransferase — —
Paraburkholderia sabiae LMG 24235 0.52 QEN71_RS01165 thiol:disulfide interchange protein DsbA/DsbL 0.76 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 153
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS21760 DSBA oxidoreductase 0.69 HSERO_RS14825 23S rRNA methyltransferase low > 78
Pseudomonas putida KT2440 0.41 PP_0127 Thiol:disulfide interchange protein 0.29 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 96
Acidovorax sp. GW101-3H11 0.40 Ac3H11_724 Periplasmic thiol:disulfide interchange protein DsbA 0.59 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) — —
Pseudomonas fluorescens SBW25 0.38 PFLU_RS00415 thiol:disulfide interchange protein DsbA/DsbL 0.29 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 109
Pseudomonas simiae WCS417 0.38 PS417_00425 thiol:disulfide interchange protein 0.29 PS417_20155 23S rRNA methyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS00415 thiol:disulfide interchange protein DsbA/DsbL 0.29 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 109
Pseudomonas stutzeri RCH2 0.38 Psest_0186 Protein-disulfide isomerase 0.30 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA low > 67
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_10950 thiol:disulfide interchange protein 0.27 AO353_02715 23S rRNA methyltransferase low > 101
Pseudomonas sp. RS175 0.37 PFR28_04628 Thiol:disulfide interchange protein DsbA 0.28 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 88
Variovorax sp. SCN45 0.37 GFF6293 Periplasmic thiol:disulfide interchange protein DsbA 0.56 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) low > 127
Pseudomonas fluorescens FW300-N2E2 0.37 Pf6N2E2_4158 Periplasmic thiol:disulfide interchange protein DsbA 0.27 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 — —
Pseudomonas sp. S08-1 0.36 OH686_12195 Periplasmic thiol:disulfide interchange protein DsbA 0.30 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA low > 80
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_11445 thiol:disulfide interchange protein 0.28 AO356_19055 23S rRNA methyltransferase — —
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_1879 Periplasmic thiol:disulfide interchange protein DsbA 0.29 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 — —
Acinetobacter radioresistens SK82 0.35 MPMX26_00035 Thiol:disulfide interchange protein DsbA 0.33 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 36
Pseudomonas syringae pv. syringae B728a ΔmexB 0.35 Psyr_0268 DSBA oxidoreductase 0.29 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.35 Psyr_0268 DSBA oxidoreductase 0.29 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase low > 86
Pseudomonas fluorescens GW456-L13 0.35 PfGW456L13_590 Periplasmic thiol:disulfide interchange protein DsbA 0.27 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 — —
Castellaniella sp019104865 MT123 0.34 ABCV34_RS12390 thiol:disulfide interchange protein DsbA/DsbL 0.52 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 48
Marinobacter adhaerens HP15 0.33 HP15_3325 DSBA oxidoreductase 0.41 HP15_790 23S rRNA 5-methyluridine methyltransferase low > 73
Dechlorosoma suillum PS 0.33 Dsui_0675 putative dithiol-disulfide isomerase involved in polyketide biosynthesis 0.58 Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA low > 51
Hydrogenophaga sp. GW460-11-11-14-LB1 0.29 GFF3065 Periplasmic thiol:disulfide interchange protein DsbA 0.56 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) low > 90
Dyella japonica UNC79MFTsu3.2 0.25 ABZR86_RS12725 thiol:disulfide interchange protein DsbA/DsbL 0.39 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 74
Kangiella aquimarina DSM 16071 0.23 B158DRAFT_0392 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis 0.41 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA low > 40
Vibrio cholerae E7946 ATCC 55056 0.21 CSW01_00170 thiol:disulfide interchange protein DsbA 0.30 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 62
Alteromonas macleodii MIT1002 0.19 MIT1002_00714 Thiol:disulfide interchange protein DsbA precursor 0.24 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Shewanella sp. ANA-3 0.17 Shewana3_1573 DSBA oxidoreductase (RefSeq) 0.29 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) — —
Shewanella oneidensis MR-1 0.17 SO2860 thiol:disulfide interchange protein, DsbA family (NCBI ptt file) 0.29 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) low > 76
Escherichia coli ECRC98 0.16 JDDGAC_17795 dsbA thiol:disulfide interchange protein DsbA 0.30 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 86
Escherichia coli BW25113 0.16 b3860 dsbA periplasmic protein disulfide isomerase I (NCBI) 0.30 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.16 OHPLBJKB_04193 Thiol:disulfide interchange protein DsbA 0.30 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 73
Escherichia coli ECRC101 0.16 MCAODC_04670 dsbA thiol:disulfide interchange protein DsbA 0.30 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Escherichia fergusonii Becca 0.16 EFB2_04757 Thiol:disulfide interchange protein DsbA 0.30 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 86
Escherichia coli ECRC100 0.16 OKFHMN_14170 dsbA thiol:disulfide interchange protein DsbA 0.30 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 80
Escherichia coli Nissle 1917 0.16 ECOLIN_RS22250 thiol:disulfide interchange protein DsbA 0.30 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 55
Escherichia coli ECRC99 0.16 KEDOAH_13980 dsbA thiol:disulfide interchange protein DsbA 0.30 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Escherichia coli ECOR38 0.16 HEPCGN_12805 dsbA thiol:disulfide interchange protein DsbA 0.30 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 87
Escherichia coli ECRC102 0.16 NIAGMN_11925 dsbA thiol:disulfide interchange protein DsbA 0.30 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Escherichia coli BL21 0.16 ECD_03746 periplasmic protein disulfide isomerase I 0.31 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent low > 61
Escherichia coli ECOR27 0.16 NOLOHH_06300 dsbA thiol:disulfide interchange protein DsbA 0.30 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 75
Escherichia coli ECRC62 0.16 BNILDI_05230 dsbA thiol:disulfide interchange protein DsbA 0.30 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 75
Erwinia tracheiphila SCR3 0.16 LU632_RS23875 dsbA thiol:disulfide interchange protein DsbA 0.30 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 74
Klebsiella michiganensis M5al 0.16 BWI76_RS00345 protein disulfide oxidoreductase DsbA 0.30 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase low > 92
Pantoea sp. MT58 0.15 IAI47_00425 thiol:disulfide interchange protein DsbA 0.29 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Enterobacter sp. TBS_079 0.15 MPMX20_04603 Thiol:disulfide interchange protein DsbA 0.30 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.15 GFF2213 Periplasmic thiol:disulfide interchange protein DsbA 0.30 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) low > 78
Dickeya dadantii 3937 0.15 DDA3937_RS00100 thiol:disulfide interchange protein DsbA 0.30 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 74
Serratia liquefaciens MT49 0.15 IAI46_24995 thiol:disulfide interchange protein DsbA 0.32 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 86
Enterobacter asburiae PDN3 0.15 EX28DRAFT_4341 Protein-disulfide isomerase 0.31 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA low > 76
Pectobacterium carotovorum WPP14 0.15 HER17_RS21475 thiol:disulfide interchange protein DsbA 0.32 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 75
Dickeya dianthicola 67-19 0.14 HGI48_RS21265 thiol:disulfide interchange protein DsbA 0.29 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 71
Rahnella sp. WP5 0.14 EX31_RS15910 thiol:disulfide interchange protein DsbA 0.31 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 89
Dickeya dianthicola ME23 0.14 DZA65_RS22240 thiol:disulfide interchange protein DsbA 0.29 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 75

Not shown: 2 genomes with orthologs for RR42_RS00835 only; 35 genomes with orthologs for RR42_RS13170 only