Conservation of cofitness between RR42_RS37440 and RR42_RS13060 in Cupriavidus basilensis FW507-4G11

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS37440 phosphogluconate dehydratase 1.0 RR42_RS13060 23S rRNA methyltransferase 0.46 1
Ralstonia solanacearum PSI07 0.78 RPSI07_RS07320 phosphogluconate dehydratase 0.83 RPSI07_RS18025 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.53 25
Ralstonia sp. UNC404CL21Col 0.77 ABZR87_RS22920 phosphogluconate dehydratase 0.84 ABZR87_RS10990 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 80
Ralstonia solanacearum UW163 0.77 UW163_RS17125 phosphogluconate dehydratase 0.83 UW163_RS12815 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB — —
Ralstonia solanacearum IBSBF1503 0.77 RALBFv3_RS16385 phosphogluconate dehydratase 0.83 RALBFv3_RS15350 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB — —
Ralstonia solanacearum GMI1000 0.77 RS_RS24620 phosphogluconate dehydratase 0.83 RS_RS06160 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 80
Herbaspirillum seropedicae SmR1 0.63 HSERO_RS05520 phosphogluconate dehydratase 0.71 HSERO_RS09295 23S rRNA (guanosine-2'-O-)-methyltransferase — —
Pseudomonas fluorescens SBW25 0.62 PFLU_RS24330 phosphogluconate dehydratase 0.50 PFLU_RS02630 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 109
Pseudomonas fluorescens SBW25-INTG 0.62 PFLU_RS24330 phosphogluconate dehydratase 0.50 PFLU_RS02630 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 109
Pseudomonas simiae WCS417 0.61 PS417_22690 phosphogluconate dehydratase 0.50 PS417_02560 23S rRNA methyltransferase low > 88
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_2898 Phosphogluconate dehydratase (EC 4.2.1.12) 0.51 Pf6N2E2_3606 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) — —
Pseudomonas sp. RS175 0.61 PFR28_00561 Phosphogluconate dehydratase 0.52 PFR28_05131 '23S rRNA (guanosine-2'-O-)-methyltransferase RlmB' transl_table=11 low > 88
Pseudomonas stutzeri RCH2 0.61 Psest_1892 6-phosphogluconate dehydratase 0.52 Psest_0692 rRNA methylase, putative, group 3 low > 67
Pseudomonas fluorescens FW300-N2C3 0.61 AO356_05220 phosphogluconate dehydratase 0.51 AO356_08605 23S rRNA methyltransferase — —
Pseudomonas putida KT2440 0.61 PP_1010 phosphogluconate dehydratase 0.48 PP_4879 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB — —
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_03420 phosphogluconate dehydratase 0.51 AO353_13205 23S rRNA methyltransferase low > 101
Hydrogenophaga sp. GW460-11-11-14-LB1 0.60 GFF5495 Phosphogluconate dehydratase (EC 4.2.1.12) 0.66 GFF4838 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) — —
Alteromonas macleodii MIT1002 0.60 MIT1002_02405 Phosphogluconate dehydratase 0.57 MIT1002_03605 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB low > 70
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_1109 6-phosphogluconate dehydratase 0.51 Psyr_0580 23S rRNA Gm-2251 2'-O-methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_1109 6-phosphogluconate dehydratase 0.51 Psyr_0580 23S rRNA Gm-2251 2'-O-methyltransferase low > 86
Caulobacter crescentus NA1000 0.60 CCNA_02134 phosphogluconate dehydratase 0.24 CCNA_01297 23S rRNA Gm2251 methyltransferase low > 66
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_02134 phosphogluconate dehydratase 0.24 CCNA_01297 23S rRNA Gm2251 methyltransferase low > 67
Shewanella oneidensis MR-1 0.60 SO2487 edd 6-phosphogluconate dehydratase (NCBI ptt file) 0.53 SO3934 RNA methyltransferase, TrmH family, group 3 (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.60 Shewana3_2149 phosphogluconate dehydratase (RefSeq) 0.53 Shewana3_0698 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) low > 73
Pseudomonas fluorescens GW456-L13 0.60 PfGW456L13_1889 Phosphogluconate dehydratase (EC 4.2.1.12) 0.51 PfGW456L13_143 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) low > 87
Rahnella sp. WP5 0.60 EX31_RS16630 phosphogluconate dehydratase 0.51 EX31_RS08780 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 89
Pseudomonas fluorescens FW300-N1B4 0.60 Pf1N1B4_601 Phosphogluconate dehydratase (EC 4.2.1.12) 0.51 Pf1N1B4_1402 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) — —
Serratia liquefaciens MT49 0.60 IAI46_23175 phosphogluconate dehydratase 0.51 IAI46_01665 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 86
Shewanella loihica PV-4 0.60 Shew_2046 phosphogluconate dehydratase (RefSeq) 0.52 Shew_3288 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.60 GFF1630 Phosphogluconate dehydratase (EC 4.2.1.12) 0.50 GFF833 '23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-)' transl_table=11 low > 78
Escherichia fergusonii Becca 0.59 EFB2_02092 Phosphogluconate dehydratase 0.50 EFB2_04355 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB low > 86
Escherichia coli Nissle 1917 0.59 ECOLIN_RS10310 phosphogluconate dehydratase 0.50 ECOLIN_RS24270 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB — —
Escherichia coli ECRC102 0.59 NIAGMN_01720 edd phosphogluconate dehydratase 0.50 NIAGMN_10065 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB — —
Escherichia coli ECRC99 0.59 KEDOAH_01765 edd phosphogluconate dehydratase 0.50 KEDOAH_15940 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB — —
Escherichia coli BL21 0.59 ECD_01822 6-phosphogluconate dehydratase 0.50 ECD_04047 23S rRNA mG2251 2'-O-ribose methyltransferase, SAM-dependent low > 61
Escherichia coli ECRC98 0.59 JDDGAC_00915 edd phosphogluconate dehydratase 0.50 JDDGAC_15855 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 86
Escherichia coli ECRC62 0.59 BNILDI_15645 edd phosphogluconate dehydratase 0.50 BNILDI_07010 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 75
Escherichia coli ECOR38 0.59 HEPCGN_04745 edd phosphogluconate dehydratase 0.50 HEPCGN_10445 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 87
Escherichia coli BW25113 0.59 b1851 edd phosphogluconate dehydratase (NCBI) 0.50 b4180 rlmB 23S rRNA (Gm2251)-methyltransferase (NCBI) low > 76
Escherichia coli ECOR27 0.59 NOLOHH_16850 edd phosphogluconate dehydratase 0.50 NOLOHH_04480 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 75
Escherichia coli ECRC100 0.59 OKFHMN_26340 edd phosphogluconate dehydratase 0.50 OKFHMN_12215 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 80
Escherichia coli ECRC101 0.59 MCAODC_19065 edd phosphogluconate dehydratase 0.50 MCAODC_02730 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 87
Enterobacter asburiae PDN3 0.59 EX28DRAFT_0705 6-phosphogluconate dehydratase (EC 4.2.1.12) 0.49 EX28DRAFT_3377 rRNA methylase, putative, group 3 low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.59 OHPLBJKB_01878 Phosphogluconate dehydratase 0.50 OHPLBJKB_03862 '23S rRNA (guanosine-2'-O-)-methyltransferase RlmB' transl_table=11 low > 73
Klebsiella michiganensis M5al 0.59 BWI76_RS18100 phosphogluconate dehydratase 0.49 BWI76_RS02580 23S rRNA (guanosine(2251)-2'-O)-methyltransferase low > 92
Enterobacter sp. TBS_079 0.59 MPMX20_02756 Phosphogluconate dehydratase 0.50 MPMX20_00461 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB low > 85
Shewanella amazonensis SB2B 0.58 Sama_1810 phosphogluconate dehydratase (RefSeq) 0.51 Sama_3066 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) — —
Dyella japonica UNC79MFTsu3.2 0.57 ABZR86_RS14690 phosphogluconate dehydratase 0.49 ABZR86_RS08265 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 74
Marinobacter adhaerens HP15 0.57 HP15_2174 6-phosphogluconate dehydratase 0.50 HP15_623 RNA methyltransferase, TrmH family, group 3 low > 73
Rhodanobacter denitrificans FW104-10B01 0.57 LRK54_RS07880 phosphogluconate dehydratase 0.47 LRK54_RS00490 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB — —
Rhodanobacter denitrificans MT42 0.57 LRK55_RS07610 phosphogluconate dehydratase 0.47 LRK55_RS00230 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB — —
Rhodanobacter sp. FW510-T8 0.56 OKGIIK_14370 edd phosphogluconate dehydratase 0.44 OKGIIK_06760 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB — —
Variovorax sp. OAS795 0.56 ABID97_RS21300 phosphogluconate dehydratase 0.62 ABID97_RS14320 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 91
Lysobacter sp. OAE881 0.55 ABIE51_RS01610 phosphogluconate dehydratase 0.45 ABIE51_RS07480 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 62
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_01480 phosphogluconate dehydratase 0.49 CSW01_13150 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 62

Not shown: 5 genomes with orthologs for RR42_RS37440 only; 32 genomes with orthologs for RR42_RS13060 only