Conservation of cofitness between RR42_RS28960 and RR42_RS12835 in Cupriavidus basilensis FW507-4G11

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS28960 acyl-CoA hydrolase 1.0 RR42_RS12835 tRNA pseudouridine synthase B 0.39 2
Ralstonia solanacearum GMI1000 0.83 RS_RS18125 acyl-CoA thioesterase 0.63 RS_RS06470 tRNA pseudouridine(55) synthase TruB low > 80
Ralstonia solanacearum PSI07 0.83 RPSI07_RS00670 acyl-CoA thioesterase 0.62 RPSI07_RS17665 tRNA pseudouridine(55) synthase TruB low > 81
Ralstonia sp. UNC404CL21Col 0.82 ABZR87_RS17075 acyl-CoA thioesterase 0.61 ABZR87_RS11220 tRNA pseudouridine(55) synthase TruB low > 80
Ralstonia solanacearum IBSBF1503 0.82 RALBFv3_RS22490 acyl-CoA thioesterase 0.62 RALBFv3_RS15690 tRNA pseudouridine(55) synthase TruB low > 76
Ralstonia solanacearum UW163 0.82 UW163_RS23035 acyl-CoA thioesterase 0.62 UW163_RS13150 tRNA pseudouridine(55) synthase TruB — —
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_10080 acyl-CoA hydrolase 0.42 AO353_05550 pseudouridine synthase low > 101
Pseudomonas sp. SVBP6 0.73 COO64_RS01865 acyl-CoA thioesterase 0.42 COO64_RS15160 truB tRNA pseudouridine(55) synthase TruB low > 93
Herbaspirillum seropedicae SmR1 0.72 HSERO_RS13415 VdlD 0.57 HSERO_RS17985 tRNA pseudouridine synthase B low > 78
Pseudomonas sp. DMC3 0.71 GFF516 hypothetical protein 0.42 GFF4990 tRNA pseudouridine synthase B low > 89
Pseudomonas simiae WCS417 0.71 PS417_28260 VdlD 0.41 PS417_23960 pseudouridine synthase — —
Dechlorosoma suillum PS 0.71 Dsui_0310 acyl-CoA hydrolase 0.50 Dsui_2720 tRNA pseudouridine 55 synthase low > 51
Pseudomonas stutzeri RCH2 0.71 Psest_0771 Acyl-CoA hydrolase 0.42 Psest_0983 tRNA pseudouridine 55 synthase — —
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS29920 acyl-CoA thioesterase 0.40 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB low > 109
Pseudomonas lactucae CFBP13502 0.70 GEMAOFIL_00120 hypothetical protein 0.41 GEMAOFIL_04943 tRNA pseudouridine synthase B low > 93
Pseudomonas fluorescens FW300-N1B4 0.70 Pf1N1B4_2001 cytosolic long-chain acyl-CoA thioester hydrolase family protein 0.41 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 87
Pseudomonas fluorescens GW456-L13 0.70 PfGW456L13_719 cytosolic long-chain acyl-CoA thioester hydrolase family protein 0.42 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 87
Pseudomonas fluorescens SBW25 0.70 PFLU_RS29920 acyl-CoA thioesterase 0.40 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB low > 109
Pseudomonas fluorescens FW300-N2C3 0.70 AO356_11970 acyl-CoA hydrolase 0.41 AO356_07400 pseudouridine synthase low > 104
Pseudomonas sp. RS175 0.70 PFR28_04527 hypothetical protein 0.41 PFR28_00092 tRNA pseudouridine synthase B — —
Marinobacter adhaerens HP15 0.70 HP15_1435 thioesterase superfamily protein 0.40 HP15_3065 tRNA pseudouridine synthase B low > 73
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_5069 Thioesterase superfamily 0.42 Psyr_4178 tRNA pseudouridine synthase B low > 86
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_5069 Thioesterase superfamily 0.42 Psyr_4178 tRNA pseudouridine synthase B low > 86
Acidovorax sp. GW101-3H11 0.69 Ac3H11_3244 cytosolic long-chain acyl-CoA thioester hydrolase family protein 0.46 Ac3H11_2865 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 79
Pseudomonas fluorescens FW300-N2E2 0.68 Pf6N2E2_4269 cytosolic long-chain acyl-CoA thioester hydrolase family protein 0.41 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 103
Hydrogenophaga sp. GW460-11-11-14-LB1 0.68 GFF2680 cytosolic long-chain acyl-CoA thioester hydrolase family protein 0.50 GFF4345 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 90
Pseudomonas putida KT2440 0.64 PP_5356 Protein VdlD 0.44 PP_4710 tRNA pseudouridine 55 synthase low > 96
Pseudomonas sp. BP01 0.64 JOY50_RS08715 acyl-CoA thioesterase 0.43 JOY50_RS26845 truB tRNA pseudouridine(55) synthase TruB low > 84
Acinetobacter radioresistens SK82 0.64 MPMX26_02367 hypothetical protein 0.38 MPMX26_02778 tRNA pseudouridine synthase B low > 36
Acinetobacter baumannii LAC-4 0.62 RR41_RS08595 acyl-CoA thioesterase 0.41 RR41_RS01740 tRNA pseudouridine(55) synthase TruB low > 55
Sinorhizobium meliloti 1021 0.60 SM_b21634 acyl-CoA thioester hydrolase 0.28 SMc00321 tRNA pseudouridine synthase B low > 103
Dyella japonica UNC79MFTsu3.2 0.36 ABZR86_RS22000 acyl-CoA thioesterase 0.31 ABZR86_RS06015 tRNA pseudouridine(55) synthase TruB low > 74
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS04355 acyl-CoA thioesterase 0.61 QEN71_RS23090 tRNA pseudouridine(55) synthase TruB low > 153
Paraburkholderia graminis OAS925 0.35 ABIE53_003085 acyl-CoA hydrolase 0.60 ABIE53_001832 tRNA pseudouridine55 synthase low > 113
Shewanella loihica PV-4 0.34 Shew_1607 thioesterase superfamily protein (RefSeq) 0.39 Shew_2825 tRNA pseudouridine synthase B (RefSeq) low > 60
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_04313 Acyl-CoA hydrolase 0.61 H281DRAFT_05106 tRNA pseudouridine synthase B low > 103
Shewanella sp. ANA-3 0.34 Shewana3_2555 thioesterase superfamily protein (RefSeq) 0.38 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) low > 73
Shewanella amazonensis SB2B 0.34 Sama_1977 cytosolic long-chain acyl-CoA thioester hydrolase family protein (RefSeq) 0.38 Sama_0963 pseudouridylate synthase (RefSeq) low > 62
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS14620 acyl-CoA hydrolase 0.59 BPHYT_RS08080 tRNA pseudouridine synthase B low > 109
Rhodanobacter sp000427505 FW510-R12 0.32 LRK53_RS06275 acyl-CoA thioesterase 0.38 LRK53_RS09080 tRNA pseudouridine(55) synthase TruB low > 59
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_10560 yciA acyl-CoA thioesterase 0.37 OKGIIK_05860 truB tRNA pseudouridine(55) synthase TruB low > 52
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS03670 acyl-CoA thioesterase 0.37 LRK54_RS01035 tRNA pseudouridine(55) synthase TruB low > 59
Rhodanobacter denitrificans MT42 0.30 LRK55_RS03420 acyl-CoA thioesterase 0.37 LRK55_RS00810 tRNA pseudouridine(55) synthase TruB low > 63
Vibrio cholerae E7946 ATCC 55056 0.30 CSW01_18835 acyl-CoA thioesterase 0.41 CSW01_03400 tRNA pseudouridine(55) synthase TruB low > 62
Kangiella aquimarina DSM 16071 0.25 B158DRAFT_0409 Acyl-CoA hydrolase 0.40 B158DRAFT_0108 tRNA pseudouridine 55 synthase low > 40

Not shown: 3 genomes with orthologs for RR42_RS28960 only; 51 genomes with orthologs for RR42_RS12835 only