Conservation of cofitness between RR42_RS11260 and RR42_RS02085 in Cupriavidus basilensis FW507-4G11

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS11260 Methylisocitrate lyase (EC 4.1.3.30) (from data) 1.0 RR42_RS02085 RNA polymerase subunit sigma-54 0.35 13
Ralstonia sp. UNC404CL21Col 0.88 ABZR87_RS14590 methylisocitrate lyase 0.79 ABZR87_RS07060 RNA polymerase factor sigma-54 low > 80
Ralstonia solanacearum IBSBF1503 0.87 RALBFv3_RS02670 methylisocitrate lyase 0.78 RALBFv3_RS11170 RNA polymerase sigma-54 factor low > 76
Ralstonia solanacearum UW163 0.87 UW163_RS11055 methylisocitrate lyase 0.78 UW163_RS02410 RNA polymerase sigma-54 factor — —
Ralstonia solanacearum PSI07 0.87 RPSI07_RS14645 methylisocitrate lyase 0.78 RPSI07_RS22130 RNA polymerase factor sigma-54 low > 81
Ralstonia solanacearum GMI1000 0.86 RS_RS10050 methylisocitrate lyase 0.79 RS_RS02020 RNA polymerase sigma-54 factor low > 80
Herbaspirillum seropedicae SmR1 0.84 HSERO_RS15660 2-methylisocitrate lyase 0.57 HSERO_RS19855 RNA polymerase subunit sigma-54 — —
Pseudomonas stutzeri RCH2 0.81 Psest_2321 methylisocitrate lyase 0.41 Psest_3313 RNA polymerase sigma-54 factor — —
Pseudomonas sp. RS175 0.81 PFR28_02928 2-methylisocitrate lyase 0.40 PFR28_00173 RNA polymerase sigma-54 factor — —
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_6061 Methylisocitrate lyase (EC 4.1.3.30) (from data) 0.40 Pf6N2E2_3267 RNA polymerase sigma-54 factor RpoN — —
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_20865 2-methylisocitrate lyase 0.42 AO356_07035 RNA polymerase sigma-54 factor — —
Pseudomonas putida KT2440 0.81 PP_2334 2-methylisocitrate lyase 0.43 PP_0952 RNA polymerase sigma-54 factor — —
Pseudomonas fluorescens FW300-N2E3 0.81 AO353_00900 2-methylisocitrate lyase 0.41 AO353_05180 RNA polymerase sigma-54 factor — —
Pseudomonas fluorescens FW300-N1B4 0.80 Pf1N1B4_3819 Methylisocitrate lyase (EC 4.1.3.30) 0.40 Pf1N1B4_1080 RNA polymerase sigma-54 factor RpoN — —
Pseudomonas fluorescens GW456-L13 0.80 PfGW456L13_4118 Methylisocitrate lyase (EC 4.1.3.30) 0.41 PfGW456L13_5014 RNA polymerase sigma-54 factor RpoN — —
Paraburkholderia sabiae LMG 24235 0.80 QEN71_RS17555 methylisocitrate lyase 0.66 QEN71_RS01755 RNA polymerase factor sigma-54 low > 153
Pseudomonas simiae WCS417 0.80 PS417_21080 2-methylisocitrate lyase 0.41 PS417_04345 RNA polymerase factor sigma-54 — —
Pseudomonas fluorescens SBW25-INTG 0.80 PFLU_RS22690 methylisocitrate lyase 0.41 PFLU_RS04400 RNA polymerase factor sigma-54 — —
Pseudomonas fluorescens SBW25 0.80 PFLU_RS22690 methylisocitrate lyase 0.41 PFLU_RS04400 RNA polymerase factor sigma-54 — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.78 Psyr_2085 methylisocitrate lyase 0.41 Psyr_4147 RNA polymerase, sigma 54 subunit, RpoN/SigL — —
Pseudomonas syringae pv. syringae B728a 0.78 Psyr_2085 methylisocitrate lyase 0.41 Psyr_4147 RNA polymerase, sigma 54 subunit, RpoN/SigL — —
Castellaniella sp019104865 MT123 0.77 ABCV34_RS01670 methylisocitrate lyase 0.33 ABCV34_RS12430 RNA polymerase factor sigma-54 low > 48
Escherichia coli ECOR38 0.76 HEPCGN_07485 prpB methylisocitrate lyase 0.41 HEPCGN_16815 rpoN RNA polymerase factor sigma-54 — —
Escherichia coli BL21 0.75 ECD_00286 2-methylisocitrate lyase 0.41 ECD_03067 RNA polymerase, sigma 54 (sigma N) factor low > 60
Escherichia coli Nissle 1917 0.75 ECOLIN_RS02150 methylisocitrate lyase 0.41 ECOLIN_RS18425 RNA polymerase factor sigma-54 — —
Escherichia coli ECRC62 0.75 BNILDI_23190 prpB methylisocitrate lyase 0.41 BNILDI_01795 rpoN RNA polymerase factor sigma-54 — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_03339 2-methylisocitrate lyase 0.41 OHPLBJKB_00498 RNA polymerase sigma-54 factor — —
Escherichia coli ECOR27 0.75 NOLOHH_01775 prpB methylisocitrate lyase 0.41 NOLOHH_09740 rpoN RNA polymerase factor sigma-54 — —
Escherichia coli BW25113 0.75 b0331 prpB 2-methylisocitrate lyase (NCBI) 0.40 b3202 rpoN DNA-directed RNA polymerase subunit N (NCBI) — —
Escherichia coli ECRC102 0.75 NIAGMN_06955 prpB methylisocitrate lyase 0.41 NIAGMN_15700 rpoN RNA polymerase factor sigma-54 — —
Escherichia coli ECRC101 0.75 MCAODC_28130 prpB methylisocitrate lyase 0.41 MCAODC_08460 rpoN RNA polymerase factor sigma-54 — —
Escherichia coli ECRC98 0.75 JDDGAC_12555 prpB methylisocitrate lyase 0.41 JDDGAC_21565 rpoN RNA polymerase factor sigma-54 — —
Escherichia coli ECRC101 0.75 OKFHMN_08900 prpB methylisocitrate lyase 0.41 OKFHMN_17940 rpoN RNA polymerase factor sigma-54 — —
Escherichia fergusonii Becca 0.75 EFB2_03706 2-methylisocitrate lyase 0.41 EFB2_00621 RNA polymerase sigma-54 factor — —
Escherichia coli ECRC99 0.75 KEDOAH_19065 prpB methylisocitrate lyase 0.41 KEDOAH_10210 rpoN RNA polymerase factor sigma-54 — —
Dyella japonica UNC79MFTsu3.2 0.74 ABZR86_RS08480 methylisocitrate lyase 0.39 ABZR86_RS19815 RNA polymerase factor sigma-54 0.42 39
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF4263 Methylisocitrate lyase (EC 4.1.3.30) 0.40 GFF2946 RNA polymerase sigma-54 factor RpoN low > 78
Xanthomonas campestris pv. campestris strain 8004 0.73 Xcc-8004.3981.1 Methylisocitrate lyase (EC 4.1.3.30) 0.33 Xcc-8004.1662.1 RNA polymerase sigma-54 factor RpoN low > 74
Pseudomonas sp. S08-1 0.73 OH686_01690 methylisocitrate lyase 0.40 OH686_08540 RNA polymerase sigma-54 factor — —
Lysobacter sp. OAE881 0.67 ABIE51_RS06015 methylisocitrate lyase 0.34 ABIE51_RS15955 RNA polymerase factor sigma-54 low > 62
Kangiella aquimarina DSM 16071 0.66 B158DRAFT_1343 methylisocitrate lyase 0.32 B158DRAFT_2080 RNA polymerase, sigma 54 subunit, RpoN/SigL low > 40
Shewanella loihica PV-4 0.66 Shew_1820 prpB 2-methylisocitrate lyase (RefSeq) 0.36 Shew_3311 RNA polymerase factor sigma-54 (RefSeq) 0.40 45
Rhodanobacter sp. FW510-T8 0.65 OKGIIK_06565 prpB methylisocitrate lyase 0.36 OKGIIK_02265 RNA polymerase factor sigma-54 low > 52
Rhodanobacter denitrificans MT42 0.65 LRK55_RS00470 methylisocitrate lyase 0.36 LRK55_RS12575 RNA polymerase factor sigma-54 low > 63
Rhodanobacter denitrificans FW104-10B01 0.65 LRK54_RS00695 methylisocitrate lyase 0.36 LRK54_RS12875 RNA polymerase factor sigma-54 low > 59
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_06735 methylisocitrate lyase 0.39 CSW01_12815 RNA polymerase sigma-54 factor low > 62
Alteromonas macleodii MIT1002 0.64 MIT1002_03129 Methylisocitrate lyase 0.40 MIT1002_00827 RNA polymerase sigma-54 factor 2 low > 70
Marinobacter adhaerens HP15 0.64 HP15_1932 methylisocitrate lyase 2 0.42 HP15_2442 RNA polymerase, sigma 54 subunit, RpoN — —
Acinetobacter radioresistens SK82 0.63 MPMX26_01289 2-methylisocitrate lyase 0.32 MPMX26_02592 RNA polymerase sigma-54 factor — —
Shewanella oneidensis MR-1 0.61 SO0345 prpB methylisocitrate lyase (NCBI ptt file) 0.36 SO3961 rpoN RNA polymerase sigma-54 factor (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.61 Sama_3294 prpB 2-methylisocitrate lyase (RefSeq) 0.37 Sama_3088 RNA polymerase factor sigma-54 (RefSeq) low > 62
Shewanella sp. ANA-3 0.60 Shewana3_3825 prpB 2-methylisocitrate lyase (RefSeq) 0.36 Shewana3_0672 RNA polymerase factor sigma-54 (RefSeq) low > 73
Rhodospirillum rubrum S1H 0.39 Rru_A2320 Ankyrin (NCBI) 0.29 Rru_A0010 Sigma-54 (RpoN) (NCBI) low > 58
Rhodopseudomonas palustris CGA009 0.36 TX73_012370 methylisocitrate lyase 0.28 TX73_000260 RNA polymerase factor sigma-54 low > 86

Not shown: 0 genomes with orthologs for RR42_RS11260 only; 42 genomes with orthologs for RR42_RS02085 only