Conservation of cofitness between RR42_RS17675 and RR42_RS01185 in Cupriavidus basilensis FW507-4G11

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS17675 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 1.0 RR42_RS01185 muropeptide transporter 0.55 4
Ralstonia solanacearum PSI07 0.79 RPSI07_RS11275 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.80 RPSI07_RS23200 MFS transporter 0.55 16
Ralstonia solanacearum GMI1000 0.79 RS_RS13915 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.81 RS_RS00760 MFS transporter 0.52 30
Ralstonia solanacearum IBSBF1503 0.78 RALBFv3_RS05970 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.80 RALBFv3_RS10145 MFS transporter 0.72 15
Ralstonia solanacearum UW163 0.78 UW163_RS07655 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.80 UW163_RS03435 MFS transporter — —
Ralstonia sp. UNC404CL21Col 0.78 ABZR87_RS01630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.81 ABZR87_RS05635 muropeptide transporter 0.47 5
Paraburkholderia sabiae LMG 24235 0.73 QEN71_RS27145 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.34 QEN71_RS00280 AmpG family muropeptide MFS transporter low > 153
Paraburkholderia bryophila 376MFSha3.1 0.72 H281DRAFT_06288 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.33 H281DRAFT_02216 MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG 0.51 5
Paraburkholderia graminis OAS925 0.72 ABIE53_003563 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.33 ABIE53_000412 PAT family beta-lactamase induction signal transducer AmpG 0.43 70
Burkholderia phytofirmans PsJN 0.72 BPHYT_RS16990 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.32 BPHYT_RS01585 major facilitator superfamily protein low > 109
Methylophilus sp. DMC18 0.69 GFF2071 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase 0.32 GFF2063 Anhydromuropeptide permease — —
Dechlorosoma suillum PS 0.67 Dsui_0384 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.43 Dsui_0739 Major Facilitator Superfamily transporter low > 51
Variovorax sp. SCN45 0.61 GFF4445 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase (EC 6.3.2.-) 0.26 GFF5071 AmpG permease low > 127
Castellaniella sp019104865 MT123 0.60 ABCV34_RS10690 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.62 ABCV34_RS10915 muropeptide transporter low > 48
Variovorax sp. OAS795 0.59 ABID97_RS06355 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.26 ABID97_RS03830 AmpG family muropeptide MFS transporter low > 91
Alteromonas macleodii MIT1002 0.59 MIT1002_00168 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.28 MIT1002_00655 muropeptide transporter 0.69 13
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF583 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.25 GFF1869 AmpG permease — —
Shewanella loihica PV-4 0.58 Shew_3144 UDP-N-acetylmuramate (RefSeq) 0.28 Shew_2892 major facilitator transporter (RefSeq) low > 60
Shewanella oneidensis MR-1 0.58 SO3805 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (NCBI ptt file) 0.29 SO3814 ampG protein, putative (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.58 Shewana3_0791 UDP-N-acetylmuramate (RefSeq) 0.29 Shewana3_0783 major facilitator transporter (RefSeq) 0.51 67
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_12875 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.23 CSW01_11705 MFS transporter 0.63 4
Dickeya dadantii 3937 0.57 DDA3937_RS18580 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.65 DDA3937_RS05620 muropeptide MFS transporter AmpG 0.53 18
Shewanella amazonensis SB2B 0.57 Sama_0769 UDP-N-acetylmuramate (RefSeq) 0.29 Sama_2556 AmpG protein, putative (RefSeq) low > 62
Dickeya dianthicola 67-19 0.57 HGI48_RS18515 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.65 HGI48_RS05665 muropeptide MFS transporter AmpG low > 71
Dickeya dianthicola ME23 0.57 DZA65_RS19650 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.65 DZA65_RS05990 muropeptide MFS transporter AmpG low > 75
Escherichia coli BL21 0.56 ECD_04101 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.67 ECD_00384 muropeptide transporter low > 61
Klebsiella michiganensis M5al 0.56 BWI76_RS02820 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.67 BWI76_RS06500 muropeptide transporter AmpG 0.28 11
Escherichia coli Nissle 1917 0.56 ECOLIN_RS24560 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.67 ECOLIN_RS02600 muropeptide MFS transporter AmpG low > 55
Escherichia coli ECOR27 0.56 NOLOHH_04200 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.67 NOLOHH_01290 ampG muropeptide MFS transporter AmpG low > 76
Escherichia coli ECRC100 0.56 OKFHMN_11940 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.67 OKFHMN_08355 ampG muropeptide MFS transporter AmpG 0.79 42
Escherichia coli ECRC101 0.56 MCAODC_02445 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.67 MCAODC_27580 ampG muropeptide MFS transporter AmpG 0.51 64
Escherichia coli ECRC62 0.56 BNILDI_07315 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.67 BNILDI_22705 ampG muropeptide MFS transporter AmpG low > 75
Escherichia coli ECRC99 0.56 KEDOAH_16215 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.67 KEDOAH_19610 ampG muropeptide MFS transporter AmpG — —
Escherichia coli ECOR38 0.56 HEPCGN_10140 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.67 HEPCGN_06970 ampG muropeptide MFS transporter AmpG low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.56 OHPLBJKB_03802 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.67 OHPLBJKB_03240 Protein AmpG low > 74
Escherichia coli ECRC98 0.56 JDDGAC_15580 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.67 JDDGAC_12010 ampG muropeptide MFS transporter AmpG low > 87
Escherichia fergusonii Becca 0.56 EFB2_04300 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.67 EFB2_03624 Anhydromuropeptide permease low > 86
Escherichia coli ECRC102 0.56 NIAGMN_09790 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.67 NIAGMN_06410 ampG muropeptide MFS transporter AmpG 0.74 15
Escherichia coli BW25113 0.56 b4233 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) 0.67 b0433 ampG muropeptide transporter (NCBI) 0.41 1
Klebsiella pneumoniae MKP103 0.56 KDGMDA_11310 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.66 KDGMDA_14585 muropeptide MFS transporter AmpG 0.69 7
Pantoea agglomerans CFBP13505 P0401 0.56 PagCFBP13505_RS11350 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.67 PagCFBP13505_RS10520 muropeptide MFS transporter AmpG low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF881 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.65 GFF4348 AmpG permease low > 78
Enterobacter sp. TBS_079 0.55 MPMX20_00515 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.67 MPMX20_01024 Anhydromuropeptide permease low > 85
Pectobacterium carotovorum WPP14 0.55 HER17_RS02615 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.67 HER17_RS15870 muropeptide MFS transporter AmpG low > 75
Pantoea sp. MT58 0.55 IAI47_02755 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.66 IAI47_14675 muropeptide MFS transporter AmpG low > 76
Serratia liquefaciens MT49 0.55 IAI46_01800 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.71 IAI46_04990 muropeptide MFS transporter AmpG low > 86
Enterobacter asburiae PDN3 0.55 EX28DRAFT_3420 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.67 EX28DRAFT_2538 AmpG-like permease low > 76
Acidovorax sp. GW101-3H11 0.54 Ac3H11_4032 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.27 Ac3H11_3358 AmpG permease low > 79
Erwinia tracheiphila SCR3 0.54 LU632_RS02135 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.59 LU632_RS18370 ampG muropeptide MFS transporter AmpG low > 74
Erwinia tracheiphila HP pepo 2.2 0.54 IJEDHG_06780 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.59 IJEDHG_16420 ampG muropeptide MFS transporter AmpG — —
Erwinia amylovora T8 0.54 OLJFJH_02365 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.62 OLJFJH_18000 muropeptide MFS transporter AmpG 0.84 3
Rahnella sp. WP5 0.54 EX31_RS08665 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.69 EX31_RS22225 muropeptide MFS transporter AmpG low > 89
Marinobacter adhaerens HP15 0.52 HP15_616 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.28 HP15_2363 major facilitator superfamily MFS_1 — —
Kangiella aquimarina DSM 16071 0.52 B158DRAFT_2035 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.24 B158DRAFT_0920 Major Facilitator Superfamily. 0.83 6
Acinetobacter baumannii LAC-4 0.50 RR41_RS18930 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.16 RR41_RS03755 MFS transporter low > 55
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS17365 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.25 ABZR86_RS15655 MFS transporter low > 74
Rhodanobacter sp000427505 FW510-R12 0.49 LRK53_RS01800 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.26 LRK53_RS17875 MFS transporter low > 59
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_17020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase 0.26 OKGIIK_15695 MFS transporter low > 52
Rhodanobacter denitrificans MT42 0.48 LRK55_RS06355 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.26 LRK55_RS08730 MFS transporter low > 63
Rhodanobacter denitrificans FW104-10B01 0.48 LRK54_RS06610 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.26 LRK54_RS09200 MFS transporter low > 59
Xanthomonas campestris pv. campestris strain 8004 0.47 Xcc-8004.1107.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) 0.24 Xcc-8004.4880.1 AmpG permease low > 74
Lysobacter sp. OAE881 0.46 ABIE51_RS17450 Mur ligase family protein 0.25 ABIE51_RS00050 MFS transporter 0.57 60
Cellulophaga baltica 18 0.15 M666_RS01115 Mur ligase family protein 0.15 M666_RS12970 AmpG family muropeptide MFS transporter low > 67

Not shown: 22 genomes with orthologs for RR42_RS17675 only; 14 genomes with orthologs for RR42_RS01185 only