| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Paraburkholderia sabiae LMG 24235 | 1.0 | QEN71_RS28660 | | 5-oxoprolinase subunit PxpA | 1.0 | QEN71_RS04575 | | RNA polymerase sigma factor RpoE | 0.69 | 17 |
| Paraburkholderia graminis OAS925 | 0.93 | ABIE53_000049 | | UPF0271 protein | 0.99 | ABIE53_003043 | | RNA polymerase sigma-70 factor (ECF subfamily) | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.93 | H281DRAFT_05811 | | UPF0271 protein | 0.99 | H281DRAFT_04355 | | RNA polymerase, sigma-24 subunit, RpoE | — | — |
| Burkholderia phytofirmans PsJN | 0.92 | BPHYT_RS18635 | | LamB/YcsF family protein | 0.99 | BPHYT_RS14405 | | RNA polymerase sigma factor RpoE | — | — |
| Ralstonia solanacearum PSI07 | 0.69 | RPSI07_RS13790 | | LamB/YcsF family protein | 0.86 | RPSI07_RS19015 | | RNA polymerase sigma factor RpoE | low | > 81 |
| Variovorax sp. OAS795 | 0.69 | ABID97_RS23840 | | 5-oxoprolinase subunit PxpA | 0.57 | ABID97_RS08330 | | RNA polymerase sigma factor RpoE | low | > 91 |
| Ralstonia solanacearum UW163 | 0.68 | UW163_RS10245 | | LamB/YcsF family protein | 0.86 | UW163_RS11910 | | RNA polymerase sigma factor RpoE | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.68 | RALBFv3_RS03425 | | LamB/YcsF family protein | 0.86 | RALBFv3_RS14445 | | RNA polymerase sigma factor RpoE | — | — |
| Ralstonia solanacearum GMI1000 | 0.68 | RS_RS10885 | | LamB/YcsF family protein | 0.86 | RS_RS05225 | | RNA polymerase sigma factor RpoE | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.68 | ABZR87_RS15325 | | 5-oxoprolinase subunit PxpA | 0.85 | ABZR87_RS10165 | | RNA polymerase sigma factor RpoE | low | > 80 |
| Variovorax sp. SCN45 | 0.66 | GFF2324 | | Lactam utilization protein LamB | 0.57 | GFF3863 | | RNA polymerase sigma factor RpoE | low | > 127 |
| Cupriavidus basilensis FW507-4G11 | 0.63 | RR42_RS00650 | | hypothetical protein | 0.86 | RR42_RS14080 | | RNA polymerase sigma factor RpoE | low | > 128 |
| Herbaspirillum seropedicae SmR1 | 0.62 | HSERO_RS08780 | | LamB/YcsF family protein | 0.83 | HSERO_RS09625 | | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli ECRC98 | 0.61 | JDDGAC_10650 | pxpA | 5-oxoprolinase subunit PxpA | 0.58 | JDDGAC_25040 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli BL21 | 0.61 | ECD_00673 | | UPF0271 family protein | 0.58 | ECD_02467 | | RNA polymerase sigma E factor | — | — |
| Escherichia coli ECOR27 | 0.61 | NOLOHH_23380 | pxpA | 5-oxoprolinase subunit PxpA | 0.58 | NOLOHH_13050 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli ECRC99 | 0.61 | KEDOAH_20970 | pxpA | 5-oxoprolinase subunit PxpA | 0.58 | KEDOAH_06845 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli ECRC101 | 0.61 | MCAODC_26215 | pxpA | 5-oxoprolinase subunit PxpA | 0.58 | MCAODC_11905 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli ECRC62 | 0.61 | BNILDI_21375 | pxpA | 5-oxoprolinase subunit PxpA | 0.58 | BNILDI_11850 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli ECRC100 | 0.61 | OKFHMN_06995 | pxpA | 5-oxoprolinase subunit PxpA | 0.58 | OKFHMN_21375 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.61 | OHPLBJKB_03004 | | hypothetical protein | 0.58 | OHPLBJKB_01134 | | ECF RNA polymerase sigma-E factor | — | — |
| Escherichia coli ECRC102 | 0.61 | NIAGMN_05050 | pxpA | 5-oxoprolinase subunit PxpA | 0.58 | NIAGMN_19145 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli Nissle 1917 | 0.61 | ECOLIN_RS03815 | | 5-oxoprolinase subunit PxpA | 0.58 | ECOLIN_RS14560 | | RNA polymerase sigma factor RpoE | — | — |
| Escherichia fergusonii Becca | 0.61 | EFB2_03390 | | 5-oxoprolinase subunit A | 0.58 | EFB2_01323 | | ECF RNA polymerase sigma-E factor | — | — |
| Escherichia coli BW25113 | 0.61 | b0713 | ybgL | hypothetical protein (NCBI) | 0.58 | b2573 | rpoE | RNA polymerase, sigma 24 (sigma E) factor (NCBI) | — | — |
| Escherichia coli ECOR38 | 0.61 | HEPCGN_01215 | pxpA | 5-oxoprolinase subunit PxpA | 0.58 | HEPCGN_20520 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.60 | GFF4618 | | Lactam utilization protein LamB | 0.58 | GFF2107 | | RNA polymerase sigma factor RpoE | — | — |
| Klebsiella michiganensis M5al | 0.59 | BWI76_RS08360 | | LamB/YcsF family protein | 0.58 | BWI76_RS21355 | | RNA polymerase sigma factor RpoE | — | — |
| Rahnella sp. WP5 | 0.59 | EX31_RS23395 | | 5-oxoprolinase subunit PxpA | 0.58 | EX31_RS21800 | | RNA polymerase sigma factor RpoE | — | — |
| Serratia liquefaciens MT49 | 0.58 | IAI46_06225 | | 5-oxoprolinase subunit PxpA | 0.58 | IAI46_19585 | | RNA polymerase sigma factor RpoE | — | — |
| Pantoea sp. MT58 | 0.58 | IAI47_13795 | | 5-oxoprolinase subunit PxpA | 0.58 | IAI47_04850 | | RNA polymerase sigma factor RpoE | — | — |
| Enterobacter asburiae PDN3 | 0.57 | EX28DRAFT_2274 | | Uncharacterized proteins, homologs of lactam utilization protein B | 0.58 | EX28DRAFT_0072 | | RNA polymerase sigma factor RpoE | — | — |
| Pectobacterium carotovorum WPP14 | 0.57 | HER17_RS14975 | | 5-oxoprolinase subunit PxpA | 0.57 | HER17_RS05780 | | RNA polymerase sigma factor RpoE | — | — |
| Dickeya dadantii 3937 | 0.56 | DDA3937_RS06425 | | 5-oxoprolinase subunit PxpA | 0.59 | DDA3937_RS15765 | | RNA polymerase sigma factor RpoE | low | > 74 |
| Dickeya dianthicola 67-19 | 0.55 | HGI48_RS06470 | | 5-oxoprolinase subunit PxpA | 0.58 | HGI48_RS15850 | | RNA polymerase sigma factor RpoE | low | > 71 |
| Dickeya dianthicola ME23 | 0.55 | DZA65_RS06815 | | 5-oxoprolinase subunit PxpA | 0.58 | DZA65_RS16930 | | RNA polymerase sigma factor RpoE | low | > 75 |
| Enterobacter sp. TBS_079 | 0.54 | MPMX20_01347 | | 5-oxoprolinase subunit A | 0.58 | MPMX20_03444 | | ECF RNA polymerase sigma-E factor | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.49 | CA265_RS10100 | | lactam utilization protein LamB | 0.24 | CA265_RS15190 | | RNA polymerase sigma factor | low | > 88 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.49 | CA264_08790 | | LamB/YcsF family protein | 0.25 | CA264_00665 | | RNA polymerase subunit sigma-24 | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.49 | OKGIIK_04730 | | 5-oxoprolinase subunit A | 0.61 | OKGIIK_07900 | rpoE | RNA polymerase sigma factor RpoE | low | > 52 |
| Shewanella loihica PV-4 | 0.46 | Shew_0006 | | LamB/YcsF family protein (RefSeq) | 0.62 | Shew_1048 | | RNA polymerase sigma factor RpoE (RefSeq) | low | > 60 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.45 | Psyr_0497 | | LamB/YcsF | 0.58 | Psyr_3958 | | RNA polymerase, sigma-24 subunit, RpoE | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.45 | Psyr_0497 | | LamB/YcsF | 0.58 | Psyr_3958 | | RNA polymerase, sigma-24 subunit, RpoE | low | > 86 |
| Castellaniella sp019104865 MT123 | 0.41 | ABCV34_RS01510 | | 5-oxoprolinase subunit PxpA | 0.69 | ABCV34_RS08355 | | RNA polymerase sigma factor RpoE | low | > 48 |
| Shewanella amazonensis SB2B | 0.40 | Sama_0021 | | hypothetical protein (RefSeq) | 0.57 | Sama_0874 | | RNA polymerase sigma factor RpoE (RefSeq) | low | > 62 |
| Lysobacter sp. OAE881 | 0.40 | ABIE51_RS08130 | | 5-oxoprolinase subunit PxpA | 0.59 | ABIE51_RS13890 | | RNA polymerase sigma factor RpoE | low | > 62 |
| Bosea sp. OAE506 | 0.38 | ABIE41_RS24170 | | 5-oxoprolinase subunit PxpA | 0.21 | ABIE41_RS07610 | | sigma-70 family RNA polymerase sigma factor | low | > 77 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.38 | Echvi_3010 | | Uncharacterized proteins, homologs of lactam utilization protein B | 0.25 | Echvi_2047 | | RNA polymerase sigma factor, sigma-70 family | low | > 79 |
| Vibrio cholerae E7946 ATCC 55056 | 0.37 | CSW01_18055 | | hypothetical protein | 0.62 | CSW01_12485 | | RNA polymerase sigma factor RpoE | — | — |
| Pseudomonas simiae WCS417 | 0.37 | PS417_21910 | | LamB/YcsF family protein | 0.58 | PS417_07120 | | RNA polymerase sigma-H factor | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.36 | PFLU_RS09840 | | 5-oxoprolinase subunit PxpA | 0.58 | PFLU_RS07230 | | RNA polymerase sigma factor RpoE | 0.18 | 71 |
| Pseudomonas fluorescens SBW25 | 0.36 | PFLU_RS09840 | | 5-oxoprolinase subunit PxpA | 0.58 | PFLU_RS07230 | | RNA polymerase sigma factor RpoE | low | > 109 |
| Pseudomonas sp. S08-1 | 0.36 | OH686_08750 | | Lactam utilization protein LamB | 0.58 | OH686_20045 | | RNA polymerase sigma factor RpoE | low | > 80 |
| Pseudomonas fluorescens FW300-N2C3 | 0.35 | AO356_04335 | | hypothetical protein | 0.58 | AO356_04575 | | RNA polymerase subunit sigma | low | > 104 |
| Pseudomonas putida KT2440 | 0.35 | PP_2920 | | putative nitrogen-containing compound degradation enzyme | 0.58 | PP_1427 | | RNA polymerase sigma E factor | low | > 96 |
| Dinoroseobacter shibae DFL-12 | 0.35 | Dshi_2026 | | LamB/YcsF family protein (RefSeq) | 0.19 | Dshi_3423 | | RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) | low | > 64 |
| Pseudomonas sp. RS175 | 0.35 | PFR28_00728 | | 5-oxoprolinase subunit A 3 | 0.58 | PFR28_00690 | | RNA polymerase sigma-H factor | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.35 | PfGW456L13_4478 | | Lactam utilization protein LamB | 0.58 | PfGW456L13_4516 | | RNA polymerase sigma-H factor AlgT | low | > 87 |
| Pseudomonas stutzeri RCH2 | 0.35 | Psest_1542 | | Uncharacterized proteins, homologs of lactam utilization protein B | 0.59 | Psest_3100 | | RNA polymerase sigma factor RpoE | low | > 67 |
| Pseudomonas fluorescens FW300-N2E3 | 0.35 | AO353_28820 | | lactam utilization protein LamB | 0.58 | AO353_17625 | | RNA polymerase subunit sigma | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.35 | Pf1N1B4_3366 | | Lactam utilization protein LamB | 0.58 | Pf1N1B4_3323 | | RNA polymerase sigma-H factor AlgT | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.34 | Pf6N2E2_2708 | | Lactam utilization protein LamB | 0.58 | Pf6N2E2_2756 | | RNA polymerase sigma-H factor AlgT | low | > 103 |
Not shown: 9 genomes with orthologs for QEN71_RS28660 only; 21 genomes with orthologs for QEN71_RS04575 only