Conservation of cofitness between Psyr_1655 and Psyr_4843 in Pseudomonas syringae pv. syringae B728a

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_1655 TatD-related deoxyribonuclease 1.0 Psyr_4843 NUDIX hydrolase 0.40 18
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_1655 TatD-related deoxyribonuclease 1.00 Psyr_4843 NUDIX hydrolase low > 86
Pseudomonas fluorescens SBW25-INTG 0.89 PFLU_RS23020 TatD family hydrolase 0.98 PFLU_RS28650 RNA pyrophosphohydrolase low > 109
Pseudomonas fluorescens SBW25 0.89 PFLU_RS23020 TatD family hydrolase 0.98 PFLU_RS28650 RNA pyrophosphohydrolase low > 109
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_20205 hydrolase TatD 0.98 AO356_10345 RNA pyrophosphohydrolase low > 104
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_5960 Putative deoxyribonuclease YcfH 0.98 Pf6N2E2_3941 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) low > 103
Pseudomonas simiae WCS417 0.89 PS417_21405 hydrolase TatD 0.98 PS417_26990 RNA pyrophosphohydrolase low > 88
Pseudomonas sp. RS175 0.89 PFR28_03002 putative metal-dependent hydrolase YcfH 0.98 PFR28_04831 RNA pyrophosphohydrolase low > 88
Pseudomonas fluorescens FW300-N2E3 0.88 AO353_01325 hydrolase TatD 0.98 AO353_08470 RNA pyrophosphohydrolase low > 101
Pseudomonas fluorescens GW456-L13 0.88 PfGW456L13_2112 Putative deoxyribonuclease YcfH 0.98 PfGW456L13_952 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) low > 87
Pseudomonas sp. S08-1 0.86 OH686_22180 Uncharacterized metal-dependent hydrolase YcfH 0.92 OH686_11425 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase low > 80
Pseudomonas putida KT2440 0.85 PP_1967 tRNA D-aminoacylase 0.98 PP_5146 RNA pyrophosphohydrolase low > 96
Pseudomonas stutzeri RCH2 0.84 Psest_1696 hydrolase, TatD family 0.92 Psest_3863 NTP pyrophosphohydrolases including oxidative damage repair enzymes — —
Pseudomonas fluorescens FW300-N1B4 0.84 Pf1N1B4_420 Putative deoxyribonuclease YcfH 0.98 Pf1N1B4_2283 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) low > 87
Shewanella amazonensis SB2B 0.53 Sama_2040 TatD family hydrolase (RefSeq) 0.67 Sama_0863 dinucleoside polyphosphate hydrolase (RefSeq) — —
Shewanella loihica PV-4 0.51 Shew_1582 TatD family hydrolase (RefSeq) 0.67 Shew_1038 dinucleoside polyphosphate hydrolase (RefSeq) — —
Shewanella oneidensis MR-1 0.50 SO2610 hydrolase, TatD family (NCBI ptt file) 0.66 SO1331 MutT/nudix family protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.50 Shewana3_1769 TatD family hydrolase (RefSeq) 0.66 Shewana3_3043 dinucleoside polyphosphate hydrolase (RefSeq) — —
Alteromonas macleodii MIT1002 0.50 MIT1002_01740 putative deoxyribonuclease YcfH 0.66 MIT1002_00647 RNA pyrophosphohydrolase low > 70
Serratia liquefaciens MT49 0.49 IAI46_09825 metal-dependent hydrolase 0.69 IAI46_20455 RNA pyrophosphohydrolase low > 86
Dickeya dianthicola 67-19 0.49 HGI48_RS13150 metal-dependent hydrolase 0.70 HGI48_RS04955 RNA pyrophosphohydrolase — —
Dickeya dianthicola ME23 0.49 DZA65_RS13620 metal-dependent hydrolase 0.70 DZA65_RS05295 RNA pyrophosphohydrolase low > 75
Dickeya dadantii 3937 0.49 DDA3937_RS13085 metal-dependent hydrolase 0.69 DDA3937_RS04945 RNA pyrophosphohydrolase low > 74
Rahnella sp. WP5 0.49 EX31_RS24470 metal-dependent hydrolase 0.68 EX31_RS13205 RNA pyrophosphohydrolase — —
Erwinia tracheiphila SCR3 0.48 LU632_RS14785 metal-dependent hydrolase 0.69 LU632_RS06105 rppH RNA pyrophosphohydrolase — —
Pectobacterium carotovorum WPP14 0.47 HER17_RS08685 metal-dependent hydrolase 0.69 HER17_RS16585 RNA pyrophosphohydrolase — —
Dechlorosoma suillum PS 0.47 Dsui_2652 hydrolase, TatD family 0.50 Dsui_1325 ADP-ribose pyrophosphatase low > 51
Pantoea sp. MT58 0.47 IAI47_12035 metal-dependent hydrolase 0.69 IAI47_03915 RNA pyrophosphohydrolase low > 76
Klebsiella michiganensis M5al 0.47 BWI76_RS11125 metal-dependent hydrolase 0.69 BWI76_RS23275 RNA pyrophosphohydrolase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF3382 Putative deoxyribonuclease YcfH 0.69 GFF1312 'Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)' transl_table=11 low > 78
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS12995 DNAase 0.51 HSERO_RS01825 RNA pyrophosphohydrolase low > 78
Acinetobacter radioresistens SK82 0.45 MPMX26_01224 putative metal-dependent hydrolase YcfH 0.70 MPMX26_00342 RNA pyrophosphohydrolase low > 36
Escherichia coli BW25113 0.45 b1100 ycfH predicted metallodependent hydrolase (NCBI) 0.70 b2830 nudH dinucleoside polyphosphate hydrolase (NCBI) low > 76
Escherichia coli ECRC62 0.45 BNILDI_19230 ycfH metal-dependent hydrolase 0.70 BNILDI_10365 rppH RNA pyrophosphohydrolase low > 75
Escherichia coli BL21 0.45 ECD_01096 putative DNase 0.70 ECD_02678 RNA pyrophosphohydrolase — —
Escherichia coli ECOR38 0.45 HEPCGN_23940 ycfH metal-dependent hydrolase 0.70 HEPCGN_19255 rppH RNA pyrophosphohydrolase low > 87
Escherichia coli ECRC102 0.45 NIAGMN_24290 ycfH metal-dependent hydrolase 0.70 NIAGMN_17770 rppH RNA pyrophosphohydrolase — —
Escherichia coli Nissle 1917 0.45 ECOLIN_RS06350 metal-dependent hydrolase 0.70 ECOLIN_RS15880 RNA pyrophosphohydrolase — —
Escherichia coli ECRC98 0.45 JDDGAC_07200 ycfH metal-dependent hydrolase 0.70 JDDGAC_23665 rppH RNA pyrophosphohydrolase — —
Escherichia coli ECRC100 0.45 OKFHMN_03540 ycfH metal-dependent hydrolase 0.70 OKFHMN_20000 rppH RNA pyrophosphohydrolase — —
Escherichia coli ECRC101 0.45 MCAODC_22900 ycfH metal-dependent hydrolase 0.70 MCAODC_10525 rppH RNA pyrophosphohydrolase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.45 OHPLBJKB_02566 putative metal-dependent hydrolase YcfH 0.70 OHPLBJKB_00900 RNA pyrophosphohydrolase — —
Escherichia coli ECOR27 0.45 NOLOHH_21070 ycfH metal-dependent hydrolase 0.70 NOLOHH_11885 rppH RNA pyrophosphohydrolase — —
Escherichia coli ECRC99 0.45 KEDOAH_24215 ycfH metal-dependent hydrolase 0.70 KEDOAH_08130 rppH RNA pyrophosphohydrolase — —
Escherichia fergusonii Becca 0.45 EFB2_02875 putative metal-dependent hydrolase YcfH 0.70 EFB2_01054 RNA pyrophosphohydrolase — —
Enterobacter sp. TBS_079 0.45 MPMX20_01780 putative metal-dependent hydrolase YcfH 0.60 MPMX20_03693 RNA pyrophosphohydrolase — —
Enterobacter asburiae PDN3 0.44 EX28DRAFT_1829 hydrolase, TatD family 0.70 EX28DRAFT_2905 NTP pyrophosphohydrolases including oxidative damage repair enzymes — —
Castellaniella sp019104865 MT123 0.44 ABCV34_RS03960 TatD family hydrolase 0.53 ABCV34_RS09820 RNA pyrophosphohydrolase low > 48
Azospirillum brasilense Sp245 0.42 AZOBR_RS08795 LuxR family transcriptional regulator 0.31 AZOBR_RS04025 RNA pyrophosphohydrolase low > 97
Magnetospirillum magneticum AMB-1 0.42 AMB_RS12295 TatD family deoxyribonuclease 0.31 AMB_RS01525 RNA pyrophosphohydrolase low > 64
Azospirillum sp. SherDot2 0.42 MPMX19_01469 putative metal-dependent hydrolase YcfH 0.33 MPMX19_01945 RNA pyrophosphohydrolase low > 112
Rhodopseudomonas palustris CGA009 0.41 TX73_014390 TatD family hydrolase 0.27 TX73_000905 RNA pyrophosphohydrolase low > 86
Phaeobacter inhibens DSM 17395 0.40 PGA1_c07990 putative hydrolase, TatD family 0.35 PGA1_c29090 RNA pyrophosphohydrolase RppH — —
Bosea sp. OAE506 0.40 ABIE41_RS15945 TatD family hydrolase 0.30 ABIE41_RS07545 RNA pyrophosphohydrolase — —
Sphingomonas koreensis DSMZ 15582 0.40 Ga0059261_0126 hydrolase, TatD family 0.30 Ga0059261_4001 NTP pyrophosphohydrolases including oxidative damage repair enzymes 0.30 62
Rhodospirillum rubrum S1H 0.39 Rru_A1700 TatD-related deoxyribonuclease (NCBI) 0.34 Rru_A1230 NUDIX hydrolase (NCBI) — —
Sinorhizobium meliloti 1021 0.39 SMc01193 hypothetical protein 0.26 SMc03785 dinucleoside polyphosphate hydrolase low > 103
Agrobacterium fabrum C58 0.37 Atu1495 hypothetical protein 0.26 Atu2772 Invasion protein A low > 89
Rhizobium sp. OAE497 0.36 ABIE40_RS09480 TatD family hydrolase 0.28 ABIE40_RS18985 RNA pyrophosphohydrolase low > 107
Dinoroseobacter shibae DFL-12 0.35 Dshi_0920 hydrolase, TatD family (RefSeq) 0.29 Dshi_0092 NUDIX hydrolase (RefSeq) low > 64
Brevundimonas sp. GW460-12-10-14-LB2 0.34 A4249_RS04755 TatD family hydrolase 0.28 A4249_RS12500 RNA pyrophosphohydrolase — —
Caulobacter crescentus NA1000 Δfur 0.29 CCNA_01898 Mg-dependent Dnase TatD 0.27 CCNA_03553 diadenosine tetraphosphate (Ap4A) hydrolase low > 67
Caulobacter crescentus NA1000 0.29 CCNA_01898 Mg-dependent Dnase TatD 0.27 CCNA_03553 diadenosine tetraphosphate (Ap4A) hydrolase low > 66

Not shown: 26 genomes with orthologs for Psyr_1655 only; 4 genomes with orthologs for Psyr_4843 only