Conservation of cofitness between Psyr_0506 and Psyr_4150 in Pseudomonas syringae pv. syringae B728a

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0506 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase 1.0 Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 0.31 11
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0506 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase 1.00 Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 low > 86
Pseudomonas simiae WCS417 0.91 PS417_02175 transcriptional regulator 0.89 PS417_04330 glmZ(sRNA)-inactivating NTPase — —
Pseudomonas fluorescens FW300-N1B4 0.91 Pf1N1B4_1489 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) 0.89 Pf1N1B4_1083 Hypothetical ATP-binding protein UPF0042, contains P-loop — —
Pseudomonas fluorescens SBW25 0.91 PFLU_RS02230 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.90 PFLU_RS04385 RNase adapter RapZ low > 109
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_3685 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) 0.90 Pf6N2E2_3270 Hypothetical ATP-binding protein UPF0042, contains P-loop low > 103
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS02230 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.90 PFLU_RS04385 RNase adapter RapZ low > 109
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_223 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) 0.88 PfGW456L13_5017 Hypothetical ATP-binding protein UPF0042, contains P-loop low > 87
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_09015 transcriptional regulator 0.90 AO356_07050 glmZ(sRNA)-inactivating NTPase low > 104
Pseudomonas sp. RS175 0.91 PFR28_05053 Bifunctional protein PutA 0.88 PFR28_00170 RNase adapter protein RapZ low > 88
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_12810 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) 0.90 AO353_05195 glmZ(sRNA)-inactivating NTPase low > 101
Pseudomonas putida KT2440 0.88 PP_4947 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase 0.86 PP_0949 putative ATP-binding protein UPF0042 low > 96
Serratia liquefaciens MT49 0.76 IAI46_15745 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.46 IAI46_22485 RNase adapter RapZ low > 86
Pseudomonas sp. S08-1 0.76 OH686_06735 Transcriptional repressor of PutA and PutP / Proline dehydrogenase / Delta-1-pyrroline-5-carboxylate dehydrogenase 0.85 OH686_08560 RNase adapter protein RapZ low > 80
Rahnella sp. WP5 0.74 EX31_RS09420 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.46 EX31_RS12385 RNase adapter RapZ low > 89
Escherichia coli ECRC101 0.74 MCAODC_23990 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.46 MCAODC_08445 rapZ RNase adapter RapZ low > 87
Escherichia coli ECRC100 0.74 OKFHMN_04605 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.46 OKFHMN_17925 rapZ RNase adapter RapZ low > 80
Escherichia coli ECRC102 0.74 NIAGMN_23730 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.46 NIAGMN_15685 rapZ RNase adapter RapZ — —
Escherichia coli ECRC99 0.74 KEDOAH_23140 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.46 KEDOAH_10225 rapZ RNase adapter RapZ — —
Escherichia coli ECRC98 0.74 JDDGAC_08215 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.46 JDDGAC_21550 rapZ RNase adapter RapZ low > 86
Escherichia coli Nissle 1917 0.74 ECOLIN_RS05290 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.46 ECOLIN_RS18440 RNase adapter RapZ low > 55
Escherichia coli ECRC62 0.74 BNILDI_19670 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.46 BNILDI_01810 rapZ RNase adapter RapZ low > 75
Escherichia coli BW25113 0.74 b1014 putA fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (NCBI) 0.46 b3205 yhbJ hypothetical protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.74 OHPLBJKB_02652 Bifunctional protein PutA 0.46 OHPLBJKB_00495 RNase adapter protein RapZ low > 73
Escherichia coli ECOR38 0.74 HEPCGN_23535 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.46 HEPCGN_16800 rapZ RNase adapter RapZ low > 87
Escherichia coli ECOR27 0.74 NOLOHH_21505 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.46 NOLOHH_09725 rapZ RNase adapter RapZ low > 75
Escherichia fergusonii Becca 0.74 EFB2_03066 Bifunctional protein PutA 0.46 EFB2_00618 RNase adapter protein RapZ low > 86
Escherichia coli BL21 0.74 ECD_01017 fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 0.46 ECD_03070 adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase low > 61
Klebsiella michiganensis M5al 0.73 BWI76_RS10795 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) 0.46 BWI76_RS25280 RNase adaptor protein RapZ low > 92
Enterobacter asburiae PDN3 0.73 EX28DRAFT_1911 L-proline dehydrogenase (EC 1.5.99.8)/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) 0.46 EX28DRAFT_3259 Predicted P-loop-containing kinase low > 76
Enterobacter sp. TBS_079 0.73 MPMX20_01702 Bifunctional protein PutA 0.46 MPMX20_04111 RNase adapter protein RapZ low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF3301 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) 0.46 GFF2949 Hypothetical ATP-binding protein UPF0042, contains P-loop low > 78
Pantoea sp. MT58 0.71 IAI47_08195 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.46 IAI47_17200 RNase adapter RapZ low > 76
Dickeya dadantii 3937 0.71 DDA3937_RS20115 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.46 DDA3937_RS01515 RNase adapter RapZ low > 74
Cupriavidus basilensis FW507-4G11 0.70 RR42_RS20125 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) 0.41 RR42_RS02060 nucleotide-binding protein low > 128
Pectobacterium carotovorum WPP14 0.70 HER17_RS01110 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.46 HER17_RS20075 RNase adapter RapZ low > 75
Dickeya dianthicola 67-19 0.70 HGI48_RS20255 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.46 HGI48_RS01430 RNase adapter RapZ low > 71
Dickeya dianthicola ME23 0.70 DZA65_RS21300 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.46 DZA65_RS01495 RNase adapter RapZ low > 75
Ralstonia sp. UNC404CL21Col 0.69 ABZR87_RS03970 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.43 ABZR87_RS07035 RNase adapter RapZ 0.53 44
Erwinia tracheiphila SCR3 0.69 LU632_RS13740 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.46 LU632_RS21295 rapZ RNase adapter RapZ low > 74
Ralstonia solanacearum GMI1000 0.69 RS_RS16540 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.43 RS_RS01995 RNase adaptor protein RapZ low > 80
Ralstonia solanacearum UW163 0.68 UW163_RS04885 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.43 UW163_RS02435 RNase adapter RapZ — —
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS08725 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.43 RALBFv3_RS11145 RNase adapter RapZ low > 76
Ralstonia solanacearum PSI07 0.68 RPSI07_RS08540 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.43 RPSI07_RS22155 RNase adapter RapZ low > 81
Acidovorax sp. GW101-3H11 0.65 Ac3H11_2850 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) 0.39 Ac3H11_3459 Hypothetical ATP-binding protein UPF0042, contains P-loop low > 79
Variovorax sp. SCN45 0.64 GFF5175 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.5.2) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) 0.37 GFF2356 RNase adapter protein RapZ low > 127
Paraburkholderia bryophila 376MFSha3.1 0.64 H281DRAFT_02404 L-proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase 0.43 H281DRAFT_01931 UPF0042 nucleotide-binding protein low > 103
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS19355 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 0.44 BPHYT_RS02885 glmZ(sRNA)-inactivating NTPase low > 109
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS29240 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.43 QEN71_RS01735 RNase adapter RapZ low > 153
Paraburkholderia graminis OAS925 0.60 ABIE53_000244 RHH-type proline utilization regulon transcriptional repressor/proline dehydrogenase/delta 1-pyrroline-5-carboxylate dehydrogenase 0.42 ABIE53_000714 UPF0042 nucleotide-binding protein 0.19 83
Castellaniella sp019104865 MT123 0.57 ABCV34_RS05285 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.37 ABCV34_RS14330 RNase adapter RapZ low > 48
Azospirillum brasilense Sp245 0.56 AZOBR_RS23695 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) 0.32 AZOBR_RS30485 nucleotide-binding protein 0.21 38
Acinetobacter radioresistens SK82 0.55 MPMX26_01466 Bifunctional protein PutA 0.41 MPMX26_00547 RNase adapter protein RapZ low > 36
Azospirillum sp. SherDot2 0.55 MPMX19_05932 Bifunctional protein PutA 0.33 MPMX19_02622 Nucleotide-binding protein low > 112
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS00905 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) 0.39 HSERO_RS19535 nucleotide-binding protein low > 78
Sphingomonas koreensis DSMZ 15582 0.50 Ga0059261_3926 L-proline dehydrogenase (EC 1.5.99.8)/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) 0.28 Ga0059261_0917 Predicted P-loop-containing kinase low > 68
Alteromonas macleodii MIT1002 0.38 MIT1002_00637 Bifunctional protein PutA 0.46 MIT1002_00824 glmZ(sRNA)-inactivating NTPase low > 70
Dinoroseobacter shibae DFL-12 0.37 Dshi_2311 delta-1-pyrroline-5-carboxylate dehydrogenase (RefSeq) 0.31 Dshi_0209 hypothetical protein (RefSeq) low > 64
Marinobacter adhaerens HP15 0.37 HP15_2688 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) 0.54 HP15_2445 protein yhbJ low > 73
Phaeobacter inhibens DSM 17395 0.36 PGA1_c11750 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) 0.33 PGA1_c01180 Predicted P-loop-containing kinase low > 62
Rhodospirillum rubrum S1H 0.36 Rru_A0656 delta-1-pyrroline-5-carboxylate dehydrogenase 3 (NCBI) 0.34 Rru_A3448 Uncharacterized P-loop ATPase protein UPF0042 (NCBI) low > 58

Not shown: 3 genomes with orthologs for Psyr_0506 only; 22 genomes with orthologs for Psyr_4150 only