Conservation of cofitness between Psyr_3831 and Psyr_4114 in Pseudomonas syringae pv. syringae B728a

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_3831 ATP-dependent helicase HrpA 1.0 Psyr_4114 Protein of unknown function UPF0102 0.43 7
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_3831 ATP-dependent helicase HrpA 1.00 Psyr_4114 Protein of unknown function UPF0102 low > 86
Pseudomonas simiae WCS417 0.89 PS417_20575 ATP-dependent helicase HrpA 0.67 PS417_04580 hypothetical protein low > 88
Pseudomonas fluorescens SBW25-INTG 0.89 PFLU_RS22265 ATP-dependent RNA helicase HrpA 0.67 PFLU_RS04645 YraN family protein low > 109
Pseudomonas fluorescens SBW25 0.89 PFLU_RS22265 ATP-dependent RNA helicase HrpA 0.67 PFLU_RS04645 YraN family protein low > 109
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_3388 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.65 Pf1N1B4_955 Predicted endonuclease distantly related to archaeal Holliday junction resolvase — —
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_2694 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.67 Pf6N2E2_5344 Predicted endonuclease distantly related to archaeal Holliday junction resolvase low > 103
Pseudomonas fluorescens FW300-N2C3 0.88 AO356_04280 ATP-dependent RNA helicase HrpA 0.66 AO356_17100 hypothetical protein low > 104
Pseudomonas fluorescens GW456-L13 0.88 PfGW456L13_4467 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.62 PfGW456L13_1641 Predicted endonuclease distantly related to archaeal Holliday junction resolvase low > 87
Pseudomonas sp. RS175 0.88 PFR28_00739 hypothetical protein 0.66 PFR28_03599 hypothetical protein low > 88
Pseudomonas putida KT2440 0.83 PP_4546 ATP-dependent helicase HrpA 0.59 PP_1324 putative endonuclease distantly related to archaeal Holliday junction resolvase low > 96
Pseudomonas stutzeri RCH2 0.80 Psest_1339 ATP-dependent helicase HrpA 0.65 Psest_3272 TIGR00252 family protein low > 67
Marinobacter adhaerens HP15 0.49 HP15_1863 RNA helicase, ATP-dependent DEAH box, HrpA type 0.29 HP15_551 hypothetical protein low > 73
Shewanella loihica PV-4 0.48 Shew_1767 ATP-dependent helicase HrpA (RefSeq) 0.31 Shew_0226 hypothetical protein (RefSeq) low > 60
Serratia liquefaciens MT49 0.47 IAI46_13330 ATP-dependent RNA helicase HrpA 0.36 IAI46_22305 YraN family protein low > 86
Shewanella amazonensis SB2B 0.47 Sama_1619 ATP-dependent helicase HrpA (RefSeq) 0.30 Sama_3355 hypothetical protein (RefSeq) low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF2632 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.35 GFF1519 Predicted endonuclease distantly related to archaeal Holliday junction resolvase low > 78
Shewanella sp. ANA-3 0.47 Shewana3_1897 ATP-dependent helicase HrpA (RefSeq) 0.28 Shewana3_3881 hypothetical protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.47 SO2229 hrpA ATP-dependent helicase HrpA (NCBI ptt file) 0.28 SO0299 conserved hypothetical protein TIGR00252 (NCBI ptt file) low > 76
Pectobacterium carotovorum WPP14 0.47 HER17_RS09660 ATP-dependent RNA helicase HrpA 0.31 HER17_RS19870 YraN family protein low > 75
Dickeya dadantii 3937 0.47 DDA3937_RS12270 ATP-dependent RNA helicase HrpA 0.33 DDA3937_RS01705 YraN family protein low > 74
Rahnella sp. WP5 0.47 EX31_RS06495 ATP-dependent RNA helicase HrpA 0.37 EX31_RS12540 YraN family protein low > 89
Dickeya dianthicola ME23 0.46 DZA65_RS12800 ATP-dependent RNA helicase HrpA 0.33 DZA65_RS01675 YraN family protein low > 75
Vibrio cholerae E7946 ATCC 55056 0.46 CSW01_06950 ATP-dependent RNA helicase HrpA 0.32 CSW01_03080 YraN family protein low > 62
Dickeya dianthicola 67-19 0.46 HGI48_RS12360 ATP-dependent RNA helicase HrpA 0.32 HGI48_RS01600 YraN family protein low > 71
Escherichia fergusonii Becca 0.46 EFB2_02565 hypothetical protein 0.35 EFB2_00675 hypothetical protein low > 86
Escherichia coli Nissle 1917 0.46 ECOLIN_RS08180 ATP-dependent RNA helicase HrpA 0.35 ECOLIN_RS18095 YraN family protein — —
Escherichia coli BL21 0.46 ECD_01368 putative ATP-dependent helicase 0.35 ECD_03015 UPF0102 family protein low > 61
Enterobacter asburiae PDN3 0.46 EX28DRAFT_1357 RNA helicase HrpA 0.34 EX28DRAFT_3197 TIGR00252 family protein low > 76
Pantoea sp. MT58 0.46 IAI47_09520 ATP-dependent RNA helicase HrpA 0.30 IAI47_02840 YraN family protein low > 76
Escherichia coli ECRC101 0.46 MCAODC_16205 hrpA ATP-dependent RNA helicase HrpA 0.33 MCAODC_08745 yraN YraN family protein low > 87
Klebsiella michiganensis M5al 0.46 BWI76_RS13165 ATP-dependent RNA helicase HrpA 0.32 BWI76_RS24920 YraN family protein low > 92
Escherichia coli ECRC62 0.46 BNILDI_17845 hrpA ATP-dependent RNA helicase HrpA 0.35 BNILDI_01505 yraN YraN family protein low > 75
Escherichia coli ECRC99 0.46 KEDOAH_26710 hrpA ATP-dependent RNA helicase HrpA 0.33 KEDOAH_09925 yraN YraN family protein — —
Escherichia coli ECRC98 0.46 JDDGAC_04220 hrpA ATP-dependent RNA helicase HrpA 0.33 JDDGAC_21850 yraN YraN family protein low > 86
Escherichia coli ECRC102 0.46 NIAGMN_25865 hrpA ATP-dependent RNA helicase HrpA 0.33 NIAGMN_15985 yraN YraN family protein — —
Escherichia coli ECRC100 0.46 OKFHMN_01730 hrpA ATP-dependent RNA helicase HrpA 0.33 OKFHMN_18225 yraN YraN family protein low > 80
Enterobacter sp. TBS_079 0.46 MPMX20_02189 hypothetical protein 0.35 MPMX20_04052 hypothetical protein low > 85
Escherichia coli ECOR27 0.46 NOLOHH_19390 hrpA ATP-dependent RNA helicase HrpA 0.34 NOLOHH_10025 yraN YraN family protein low > 75
Escherichia coli ECOR38 0.46 HEPCGN_26110 hrpA ATP-dependent RNA helicase HrpA 0.35 HEPCGN_17100 yraN YraN family protein low > 87
Escherichia coli BW25113 0.46 b1413 hrpA ATP-dependent helicase (RefSeq) 0.35 b3148 yraN hypothetical protein (NCBI) low > 76
Alteromonas macleodii MIT1002 0.45 MIT1002_01685 ATP-dependent RNA helicase HrpB 0.29 MIT1002_03115 hypothetical protein low > 70
Erwinia tracheiphila SCR3 0.45 LU632_RS12630 hrpA ATP-dependent RNA helicase HrpA 0.35 LU632_RS02220 YraN family protein low > 74
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS13030 ATP-dependent helicase 0.34 RR42_RS19735 hypothetical protein low > 128
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS11020 ATP-dependent RNA helicase HrpA 0.31 ABZR87_RS03810 YraN family protein low > 80
Ralstonia solanacearum GMI1000 0.41 RS_RS06270 ATP-dependent RNA helicase HrpA 0.32 RS_RS16355 YraN family protein low > 80
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS15490 ATP-dependent RNA helicase HrpA 0.33 RALBFv3_RS08490 YraN family protein low > 76
Ralstonia solanacearum UW163 0.41 UW163_RS12950 ATP-dependent RNA helicase HrpA 0.33 UW163_RS05120 YraN family protein — —
Ralstonia solanacearum PSI07 0.41 RPSI07_RS17865 ATP-dependent RNA helicase HrpA 0.33 RPSI07_RS08735 YraN family protein low > 81
Dechlorosoma suillum PS 0.41 Dsui_1373 ATP-dependent helicase HrpA 0.39 Dsui_0252 TIGR00252 family protein low > 51
Variovorax sp. OAS795 0.39 ABID97_RS16615 ATP-dependent RNA helicase HrpA 0.27 ABID97_RS00280 YraN family protein low > 91
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS17315 ATP-dependent helicase 0.37 HSERO_RS23355 hypothetical protein — —
Kangiella aquimarina DSM 16071 0.39 B158DRAFT_1779 ATP-dependent helicase HrpA 0.42 B158DRAFT_2107 TIGR00252 family protein low > 40
Acidovorax sp. GW101-3H11 0.38 Ac3H11_896 macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. 0.28 Ac3H11_4467 Predicted endonuclease distantly related to archaeal Holliday junction resolvase low > 79
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS19720 ATP-dependent RNA helicase HrpA 0.36 ABZR86_RS11390 YraN family protein low > 74
Variovorax sp. SCN45 0.38 GFF247 ATP-dependent helicase HrpA 0.28 GFF3736 UPF0102 protein YraN low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF4301 macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. 0.26 GFF2716 Predicted endonuclease distantly related to archaeal Holliday junction resolvase — —
Lysobacter sp. OAE881 0.37 ABIE51_RS05155 ATP-dependent RNA helicase HrpA 0.43 ABIE51_RS04685 YraN family protein low > 62
Acinetobacter radioresistens SK82 0.37 MPMX26_02008 hypothetical protein 0.30 MPMX26_02280 hypothetical protein — —
Bifidobacterium breve UCC2003 0.32 BBR_RS17010 DUF3418 domain-containing protein 0.24 BBR_RS14575 YraN family protein low > 34

Not shown: 8 genomes with orthologs for Psyr_3831 only; 22 genomes with orthologs for Psyr_4114 only