Conservation of cofitness between Psyr_0625 and Psyr_3742 in Pseudomonas syringae pv. syringae B728a

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0625 Protein of unknown function DUF980 1.0 Psyr_3742 FAD dependent oxidoreductase:Protein of unknown function DUF752 0.34 4
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0625 Protein of unknown function DUF980 1.00 Psyr_3742 FAD dependent oxidoreductase:Protein of unknown function DUF752 low > 86
Pseudomonas fluorescens FW300-N2C3 0.80 AO356_15195 zinc-dependent peptidase 0.74 AO356_03570 FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 104
Pseudomonas sp. SVBP6 0.80 COO64_RS15725 zinc-dependent peptidase 0.71 COO64_RS06835 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 93
Pseudomonas fluorescens FW300-N1B4 0.78 Pf1N1B4_2667 Inner membrane protein 0.74 Pf1N1B4_373 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC low > 87
Pseudomonas fluorescens GW456-L13 0.78 PfGW456L13_1336 Inner membrane protein 0.74 PfGW456L13_2155 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 87
Pseudomonas fluorescens FW300-N2E2 0.78 Pf6N2E2_4973 Inner membrane protein 0.75 Pf6N2E2_2541 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC low > 103
Pseudomonas putida KT2440 0.77 PP_0539 glucose-regulated peptidase 0.68 PP_1751 methyltransferase/FAD-dependent oxidoreductase low > 96
Pseudomonas fluorescens SBW25 0.76 PFLU_RS26775 zinc-dependent peptidase 0.72 PFLU_RS21190 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 109
Pseudomonas fluorescens SBW25-INTG 0.76 PFLU_RS26775 zinc-dependent peptidase 0.72 PFLU_RS21190 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 109
Pseudomonas sp. BP01 0.76 JOY50_RS23035 zinc-dependent peptidase 0.70 JOY50_RS16225 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 84
Pseudomonas simiae WCS417 0.76 PS417_24840 hypothetical protein 0.73 PS417_19225 FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 88
Pseudomonas fluorescens FW300-N2E3 0.76 AO353_06590 zinc-dependent peptidase 0.75 AO353_02165 FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 101
Pseudomonas lactucae CFBP13502 0.76 GEMAOFIL_05123 Protein MtfA 0.73 GEMAOFIL_02096 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 96
Pseudomonas orientalis W4I3 0.76 QF045_RS27125 zinc-dependent peptidase 0.71 QF045_RS21225 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 93
Pseudomonas sp. DMC3 0.74 GFF3852 Protein MtfA 0.75 GFF4698 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 89
Pseudomonas sp. RS175 0.74 PFR28_03892 Protein MtfA 0.73 PFR28_00884 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 88
Pseudomonas sp. S08-1 0.72 OH686_09430 Putative inner membrane protein 0.68 OH686_20990 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 80
Pseudomonas stutzeri RCH2 0.67 Psest_0666 Uncharacterized protein conserved in bacteria 0.62 Psest_1634 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 0.26 49
Pseudomonas aeruginosa PA14 0.67 IKLFDK_20780 zinc-dependent peptidase 0.62 IKLFDK_17740 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 98
Pseudomonas aeruginosa MRSN321 0.67 DY961_RS27615 zinc-dependent peptidase 0.62 DY961_RS15640 mnmC;go_function=tRNA bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 100
Pseudomonas aeruginosa PUPa3 0.66 DQ20_RS48030 zinc-dependent peptidase 0.62 DQ20_RS41435 mnmC;go_function=tRNA bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 101
Pseudomonas segetis P6 0.64 MPMX49_01028 Protein MtfA 0.66 MPMX49_02868 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 75
Dechlorosoma suillum PS 0.37 Dsui_2818 hypothetical protein 0.27 Dsui_2868 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain protein low > 51
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_00825 hypothetical protein 0.28 H281DRAFT_02360 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein low > 103
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS22320 zinc-dependent peptidase 0.27 QEN71_RS29485 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 153
Paraburkholderia graminis OAS925 0.34 ABIE53_002041 Mlc titration factor MtfA (ptsG expression regulator) 0.28 ABIE53_000291 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein low > 113
Burkholderia phytofirmans PsJN 0.33 BPHYT_RS09030 membrane protein 0.28 BPHYT_RS19575 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 109
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS13320 membrane protein 0.20 RR42_RS09010 FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 128
Ralstonia solanacearum GMI1000 0.33 RS_RS05935 membrane protein 0.26 RS_RS08635 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 80
Ralstonia sp. UNC404CL21Col 0.32 ABZR87_RS10750 zinc-dependent peptidase 0.27 ABZR87_RS12805 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 80
Ralstonia solanacearum PSI07 0.32 RPSI07_RS18255 membrane protein 0.26 RPSI07_RS16115 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 81
Ralstonia solanacearum UW163 0.31 UW163_RS12585 membrane protein 0.26 UW163_RS14670 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC — —
Ralstonia solanacearum IBSBF1503 0.31 RALBFv3_RS15115 membrane protein 0.26 RALBFv3_RS01360 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 76
Pantoea sp. MT58 0.30 IAI47_07890 DgsA anti-repressor MtfA 0.32 IAI47_06175 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 76
Klebsiella pneumoniae MKP103 0.30 KDGMDA_25710 DgsA anti-repressor MtfA 0.30 KDGMDA_27245 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 95
Pantoea agglomerans CFBP13505 P0401 0.30 PagCFBP13505_RS01800 DgsA anti-repressor MtfA 0.33 PagCFBP13505_RS00130 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.30 GFF3986 FIG01220476: hypothetical protein 0.31 GFF1945 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 78
Enterobacter sp. TBS_079 0.30 MPMX20_02972 Protein MtfA 0.30 MPMX20_03259 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 85
Enterobacter asburiae PDN3 0.30 EX28DRAFT_0578 Uncharacterized protein conserved in bacteria 0.31 EX28DRAFT_0280 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain low > 76
Klebsiella michiganensis M5al 0.30 BWI76_RS18460 DgsA anti-repressor MtfA 0.30 BWI76_RS20410 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 92
Escherichia coli BL21 0.30 ECD_01890 anti-repressor for DgsA(Mlc) 0.32 ECD_02249 fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_01733 Protein MtfA 0.32 OHPLBJKB_01381 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 74
Serratia liquefaciens MT49 0.30 IAI46_16625 DgsA anti-repressor MtfA 0.29 IAI46_18000 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 87
Rahnella sp. WP5 0.29 EX31_RS11010 DgsA anti-repressor MtfA 0.30 EX31_RS19660 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 89
Escherichia coli ECRC99 0.29 KEDOAH_02885 mtfA DgsA anti-repressor MtfA 0.32 KEDOAH_05555 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC — —
Escherichia coli ECOR27 0.29 NOLOHH_16160 mtfA DgsA anti-repressor MtfA 0.32 NOLOHH_14275 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 76
Escherichia coli ECRC98 0.29 JDDGAC_29340 mtfA DgsA anti-repressor MtfA 0.32 JDDGAC_26600 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 87
Escherichia coli ECRC100 0.29 OKFHMN_25210 mtfA DgsA anti-repressor MtfA 0.32 OKFHMN_22640 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC — —
Escherichia coli ECOR38 0.29 HEPCGN_03610 mtfA DgsA anti-repressor MtfA 0.32 HEPCGN_21845 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 88
Escherichia coli ECRC62 0.29 BNILDI_14950 mtfA DgsA anti-repressor MtfA 0.32 BNILDI_13195 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 75
Escherichia coli Nissle 1917 0.29 ECOLIN_RS11350 DgsA anti-repressor MtfA 0.31 ECOLIN_RS13465 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC — —
Escherichia coli ECRC102 0.29 NIAGMN_22715 mtfA DgsA anti-repressor MtfA 0.32 NIAGMN_20415 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 80
Escherichia coli BW25113 0.29 b1976 b1976 orf, hypothetical protein (VIMSS) 0.32 b2324 b2324 putative peptidase (VIMSS) low > 76
Escherichia coli ECRC101 0.29 MCAODC_20180 mtfA DgsA anti-repressor MtfA 0.32 MCAODC_13680 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 87
Escherichia fergusonii Becca 0.29 EFB2_01949 Protein MtfA 0.31 EFB2_01534 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 86
Pectobacterium carotovorum WPP14 0.29 HER17_RS13575 DgsA anti-repressor MtfA 0.28 HER17_RS06960 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 75
Castellaniella sp019104865 MT123 0.29 ABCV34_RS00800 M90 family metallopeptidase 0.16 ABCV34_RS09580 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 48
Dickeya dianthicola 67-19 0.29 HGI48_RS08595 DgsA anti-repressor MtfA 0.29 HGI48_RS14485 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 71
Dickeya dadantii 3937 0.28 DDA3937_RS08430 DgsA anti-repressor MtfA 0.29 DDA3937_RS14515 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 74
Dickeya dianthicola ME23 0.28 DZA65_RS08885 DgsA anti-repressor MtfA 0.29 DZA65_RS15420 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 75
Erwinia amylovora T8 0.28 OLJFJH_12465 DgsA anti-repressor MtfA 0.30 OLJFJH_11180 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 58
Kangiella aquimarina DSM 16071 0.28 B158DRAFT_1205 Uncharacterized protein conserved in bacteria 0.17 B158DRAFT_1306 Uncharacterized conserved protein low > 40
Variovorax sp. OAS795 0.27 ABID97_RS17870 M90 family metallopeptidase 0.17 ABID97_RS15455 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 91
Shewanella sp. ANA-3 0.26 Shewana3_1211 hypothetical protein (RefSeq) 0.15 Shewana3_1474 FAD dependent oxidoreductase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.26 SO3335 conserved hypothetical protein (NCBI ptt file) 0.15 SO3073 conserved hypothetical protein (NCBI ptt file) low > 76
Variovorax sp. SCN45 0.25 GFF555 Putative inner membrane protein 0.15 GFF1245 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 127
Marinobacter adhaerens HP15 0.23 HP15_848 protein containing DUF980 0.31 HP15_1540 protein YfcK low > 73
Acidovorax sp. GW101-3H11 0.23 Ac3H11_39 Inner membrane protein 0.18 Ac3H11_579 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 79

Not shown: 11 genomes with orthologs for Psyr_0625 only; 11 genomes with orthologs for Psyr_3742 only