Conservation of cofitness between Psyr_0485 and Psyr_0468 in Pseudomonas syringae pv. syringae B728a

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0485 Protein of unknown function DUF179 1.0 Psyr_0468 Aminotransferase, class I and II 0.36 10
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0485 Protein of unknown function DUF179 1.00 Psyr_0468 Aminotransferase, class I and II low > 86
Pseudomonas fluorescens FW300-N1B4 0.75 Pf1N1B4_2350 UPF0301 protein YqgE 0.96 Pf1N1B4_555 Uncharacterized PLP-dependent aminotransferase YfdZ low > 87
Pseudomonas sp. RS175 0.75 PFR28_04234 hypothetical protein 0.96 PFR28_00596 Glutamate-pyruvate aminotransferase AlaC low > 88
Pseudomonas fluorescens SBW25 0.74 PFLU_RS28330 YqgE/AlgH family protein 0.95 PFLU_RS23580 alanine transaminase low > 109
Pseudomonas fluorescens SBW25-INTG 0.74 PFLU_RS28330 YqgE/AlgH family protein 0.95 PFLU_RS23580 alanine transaminase low > 109
Pseudomonas simiae WCS417 0.74 PS417_26685 hypothetical protein 0.95 PS417_21975 glutamate-pyruvate aminotransferase low > 88
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_4609 UPF0301 protein YqgE 0.96 Pf6N2E2_2862 Uncharacterized PLP-dependent aminotransferase YfdZ low > 103
Pseudomonas fluorescens FW300-N2C3 0.74 AO356_13465 hypothetical protein 0.97 AO356_05050 glutamate-pyruvate aminotransferase low > 104
Pseudomonas fluorescens FW300-N2E3 0.73 AO353_08120 hypothetical protein 0.96 AO353_03235 glutamate-pyruvate aminotransferase low > 101
Pseudomonas fluorescens GW456-L13 0.73 PfGW456L13_1019 UPF0301 protein YqgE 0.97 PfGW456L13_1928 Uncharacterized PLP-dependent aminotransferase YfdZ low > 87
Pseudomonas sp. S08-1 0.69 OH686_10925 UPF0301 protein YqgE 0.91 OH686_04000 Glutamate-pyruvate aminotransferase AlaC low > 80
Pseudomonas putida KT2440 0.69 PP_4995 putative protein possibly involved in the control of exopolysaccharide production 0.95 PP_0817 aminotransferase low > 96
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS04220 hypothetical protein 0.19 BPHYT_RS27000 aspartate aminotransferase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_04814 putative transcriptional regulator 0.20 H281DRAFT_02907 arginine:pyruvate transaminase low > 103
Paraburkholderia graminis OAS925 0.45 ABIE53_001128 putative transcriptional regulator 0.21 ABIE53_005883 arginine:pyruvate transaminase low > 113
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS15875 hypothetical protein 0.83 RR42_RS28540 glutamate--pyruvate aminotransferase low > 128
Magnetospirillum magneticum AMB-1 0.44 AMB_RS04505 YqgE/AlgH family protein 0.56 AMB_RS18860 pyridoxal phosphate-dependent aminotransferase low > 64
Acidovorax sp. GW101-3H11 0.42 Ac3H11_3981 UPF0301 protein YqgE 0.83 Ac3H11_3720 Uncharacterized PLP-dependent aminotransferase YfdZ low > 79
Rhizobium sp. OAE497 0.42 ABIE40_RS04185 YqgE/AlgH family protein 0.52 ABIE40_RS08645 LL-diaminopimelate aminotransferase low > 107
Dechlorosoma suillum PS 0.40 Dsui_0593 putative transcriptional regulator 0.79 Dsui_2909 aspartate/tyrosine/aromatic aminotransferase low > 51
Azospirillum brasilense Sp245 0.40 AZOBR_RS10525 hypothetical protein 0.57 AZOBR_RS07830 aminotransferase — —
Rhodopseudomonas palustris CGA009 0.40 TX73_004710 YqgE/AlgH family protein 0.48 TX73_012935 LL-diaminopimelate aminotransferase low > 86
Pectobacterium carotovorum WPP14 0.40 HER17_RS02630 YqgE/AlgH family protein 0.92 HER17_RS06655 alanine transaminase low > 75
Castellaniella sp019104865 MT123 0.40 ABCV34_RS10730 YqgE/AlgH family protein 0.80 ABCV34_RS02290 alanine transaminase low > 48
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS02315 transcriptional regulator 0.82 HSERO_RS12800 aspartate aminotransferase low > 78
Serratia liquefaciens MT49 0.39 IAI46_21395 YqgE/AlgH family protein 0.92 IAI46_18180 alanine transaminase low > 86
Azospirillum sp. SherDot2 0.39 MPMX19_01077 hypothetical protein 0.56 MPMX19_00804 Glutamate-pyruvate aminotransferase AlaC — —
Dickeya dadantii 3937 0.39 DDA3937_RS18565 YqgE/AlgH family protein 0.91 DDA3937_RS14825 alanine transaminase low > 74
Agrobacterium fabrum C58 0.39 Atu0781 hypothetical protein 0.50 Atu1589 aminotransferase, class I low > 89
Pantoea sp. MT58 0.39 IAI47_03610 YqgE/AlgH family protein 0.89 IAI47_05575 alanine transaminase low > 76
Rhodospirillum rubrum S1H 0.39 Rru_A3059 Protein of unknown function DUF179 (NCBI) 0.56 Rru_A2411 Aminotransferase, class I and II (NCBI) low > 58
Bosea sp. OAE506 0.38 ABIE41_RS23005 YqgE/AlgH family protein 0.50 ABIE41_RS19175 LL-diaminopimelate aminotransferase low > 77
Sinorhizobium meliloti 1021 0.38 SMc00019 hypothetical protein 0.52 SMc00294 aminotransferase low > 103
Dickeya dianthicola 67-19 0.38 HGI48_RS18500 YqgE/AlgH family protein 0.92 HGI48_RS14755 alanine transaminase low > 71
Dickeya dianthicola ME23 0.38 DZA65_RS19635 YqgE/AlgH family protein 0.92 DZA65_RS15705 alanine transaminase 0.28 58
Klebsiella michiganensis M5al 0.38 BWI76_RS24080 DUF179 domain-containing protein 0.89 BWI76_RS20495 alanine transaminase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.38 GFF3050 UPF0301 protein YqgE 0.89 GFF1970 Uncharacterized PLP-dependent aminotransferase YfdZ low > 78
Escherichia coli ECOR27 0.37 NOLOHH_11140 yqgE YqgE/AlgH family protein 0.88 NOLOHH_14055 alaC alanine transaminase low > 75
Escherichia coli ECRC102 0.37 NIAGMN_17035 yqgE YqgE/AlgH family protein 0.88 NIAGMN_20145 alaC alanine transaminase — —
Escherichia coli ECRC62 0.37 BNILDI_09720 yqgE YqgE/AlgH family protein 0.88 BNILDI_12910 alaC alanine transaminase low > 75
Escherichia coli ECRC98 0.37 JDDGAC_22900 yqgE YqgE/AlgH family protein 0.88 JDDGAC_26335 alaC alanine transaminase low > 86
Escherichia coli ECRC100 0.37 OKFHMN_19270 yqgE YqgE/AlgH family protein 0.88 OKFHMN_22370 alaC alanine transaminase low > 80
Escherichia coli ECRC99 0.37 KEDOAH_08870 algH YqgE/AlgH family protein 0.88 KEDOAH_05850 alaC alanine transaminase — —
Escherichia coli ECRC101 0.37 MCAODC_09790 yqgE YqgE/AlgH family protein 0.88 MCAODC_12900 alaC alanine transaminase low > 87
Escherichia coli Nissle 1917 0.37 ECOLIN_RS16400 YqgE/AlgH family protein 0.88 ECOLIN_RS13690 alanine transaminase low > 55
Escherichia coli ECOR38 0.37 HEPCGN_18575 yqgE YqgE/AlgH family protein 0.88 HEPCGN_21580 alaC alanine transaminase low > 87
Escherichia coli BW25113 0.37 b2948 yqgE orf, hypothetical protein (VIMSS) 0.88 b2379 yfdZ hypothetical protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_00770 hypothetical protein 0.88 OHPLBJKB_01342 Glutamate-pyruvate aminotransferase AlaC low > 73
Escherichia coli BL21 0.37 ECD_02778 uncharacterized protein 0.88 ECD_02289 glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase low > 61
Escherichia fergusonii Becca 0.37 EFB2_00954 hypothetical protein 0.88 EFB2_01495 Glutamate-pyruvate aminotransferase AlaC low > 86
Rahnella sp. WP5 0.35 EX31_RS02670 YqgE/AlgH family protein 0.91 EX31_RS20015 alanine transaminase low > 89
Enterobacter asburiae PDN3 0.35 EX28DRAFT_2986 Putative transcriptional regulator 0.88 EX28DRAFT_0240 Aspartate/tyrosine/aromatic aminotransferase low > 76
Enterobacter sp. TBS_079 0.35 MPMX20_03806 hypothetical protein 0.88 MPMX20_03277 Glutamate-pyruvate aminotransferase AlaC low > 85
Caulobacter crescentus NA1000 0.32 CCNA_03506 putative transcriptional regulator 0.51 CCNA_01446 LL-diaminopimelate aminotransferase low > 66
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_03506 putative transcriptional regulator 0.51 CCNA_01446 LL-diaminopimelate aminotransferase low > 67
Sphingomonas koreensis DSMZ 15582 0.30 Ga0059261_4015 Putative transcriptional regulator 0.53 Ga0059261_1288 Aspartate/tyrosine/aromatic aminotransferase low > 68
Brevundimonas sp. GW460-12-10-14-LB2 0.29 A4249_RS00260 YqgE/AlgH family protein 0.54 A4249_RS02425 LL-diaminopimelate aminotransferase low > 48
Bacteroides thetaiotaomicron VPI-5482 0.22 BT1078 putative transcriptional regulator (NCBI ptt file) 0.26 BT3935 aminotransferase (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.21 BACOVA_04061 putative ACR, COG1678 0.27 BACOVA_01161 aminotransferase, class I/II low > 94
Echinicola vietnamensis KMM 6221, DSM 17526 0.21 Echvi_3442 Putative transcriptional regulator 0.25 Echvi_0124 Aspartate/tyrosine/aromatic aminotransferase low > 79
Bacteroides stercoris CC31F 0.20 HMPREF1181_RS16440 YqgE/AlgH family protein 0.29 HMPREF1181_RS06565 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 56
Mycobacterium tuberculosis H37Rv 0.16 Rv0038 Conserved protein 0.17 Rv1178 Probable aminotransferase low > 58
Pontibacter actiniarum KMM 6156, DSM 19842 0.14 CA264_05580 hypothetical protein 0.23 CA264_01550 aminotransferase low > 74

Not shown: 30 genomes with orthologs for Psyr_0485 only; 10 genomes with orthologs for Psyr_0468 only