| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_2154 | | transcriptional regulator, LacI family | 1.0 | Psyr_0358 | | Diaminopimelate-binding protein / L-cystine-binding protein | 0.39 | 18 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_2154 | | transcriptional regulator, LacI family | 1.00 | Psyr_0358 | | Diaminopimelate-binding protein / L-cystine-binding protein | low | > 86 |
| Pseudomonas fluorescens SBW25 | 0.78 | PFLU_RS20365 | | LacI family DNA-binding transcriptional regulator | 0.74 | PFLU_RS01215 | | cystine ABC transporter substrate-binding protein | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.78 | PFLU_RS20365 | | LacI family DNA-binding transcriptional regulator | 0.74 | PFLU_RS01215 | | cystine ABC transporter substrate-binding protein | low | > 109 |
| Pseudomonas simiae WCS417 | 0.78 | PS417_18390 | | LacI family transcriptional regulator | 0.73 | PS417_01105 | | cystine transporter subunit | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.77 | AO353_20830 | | LacI family transcriptional regulator | 0.74 | AO353_11675 | | cystine transporter subunit | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.76 | Pf6N2E2_164 | | Ribose operon repressor | 0.74 | Pf6N2E2_3919 | | Cystine ABC transporter, periplasmic cystine-binding protein FliY | low | > 103 |
| Pseudomonas fluorescens FW300-N1B4 | 0.76 | Pf1N1B4_6032 | | Ribose operon repressor | 0.77 | Pf1N1B4_1693 | | Cystine ABC transporter, periplasmic cystine-binding protein FliY | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.75 | AO356_00955 | | LacI family transcriptional regulator | 0.74 | AO356_10235 | | cystine transporter subunit | low | > 104 |
| Pseudomonas sp. RS175 | 0.75 | PFR28_02734 | | Ribose operon repressor | 0.73 | PFR28_04855 | | L-cystine-binding protein FliY | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.74 | PfGW456L13_3909 | | Ribose operon repressor | 0.78 | PfGW456L13_444 | | Cystine ABC transporter, periplasmic cystine-binding protein FliY | low | > 87 |
| Pseudomonas putida KT2440 | 0.72 | PP_2457 | | DNA-binding transcriptional repressor | 0.70 | PP_0227 | | periplasmic cystine-binding protein | low | > 96 |
| Paraburkholderia sabiae LMG 24235 | 0.62 | QEN71_RS07355 | | LacI family DNA-binding transcriptional regulator | 0.34 | QEN71_RS05410 | | amino acid ABC transporter substrate-binding protein | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.61 | BPHYT_RS11205 | | LacI family transcription regulator | 0.38 | BPHYT_RS08560 | | cysteine ABC transporter substrate-binding protein | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.61 | H281DRAFT_05228 | | transcriptional regulator, LacI family | 0.37 | H281DRAFT_00742 | | amino acid ABC transporter substrate-binding protein, PAAT family | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.61 | ABIE53_002322 | | LacI family transcriptional regulator | 0.37 | ABIE53_001953 | | cystine transport system substrate-binding protein | low | > 113 |
| Ralstonia sp. UNC404CL21Col | 0.57 | ABZR87_RS09955 | | LacI family DNA-binding transcriptional regulator | 0.24 | ABZR87_RS00675 | | glutamine ABC transporter substrate-binding protein | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.57 | RPSI07_RS19225 | | LacI family transcriptional regulator | 0.23 | RPSI07_RS01835 | | amino acid ABC transporter substrate-binding protein | low | > 81 |
| Ralstonia solanacearum UW163 | 0.57 | UW163_RS11705 | | LacI family transcriptional regulator | 0.24 | UW163_RS22990 | | amino acid ABC transporter substrate-binding protein | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.57 | RALBFv3_RS14240 | | LacI family transcriptional regulator | 0.24 | RALBFv3_RS22445 | | amino acid ABC transporter substrate-binding protein | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.57 | RS_RS05020 | | LacI family transcriptional regulator | 0.21 | RS_RS19470 | | amino acid ABC transporter substrate-binding protein | low | > 80 |
| Herbaspirillum seropedicae SmR1 | 0.48 | HSERO_RS11495 | | LacI family transcription regulator | 0.39 | HSERO_RS10775 | | cysteine ABC transporter substrate-binding protein | low | > 78 |
| Acidovorax sp. GW101-3H11 | 0.42 | Ac3H11_1840 | | Ribose operon repressor | 0.25 | Ac3H11_2555 | | ABC transporter for L-Histidine, periplasmic substrate-binding component 1 (from data) | low | > 79 |
| Variovorax sp. SCN45 | 0.40 | GFF2137 | | Ribose operon repressor | 0.27 | GFF6405 | | ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) | low | > 127 |
| Vibrio cholerae E7946 ATCC 55056 | 0.39 | CSW01_08660 | | PurR family transcriptional regulator | 0.28 | CSW01_00050 | | amino acid ABC transporter substrate-binding protein | low | > 62 |
| Dickeya dadantii 3937 | 0.38 | DDA3937_RS12620 | | HTH-type transcriptional repressor PurR | 0.31 | DDA3937_RS01285 | | amino acid ABC transporter substrate-binding protein | low | > 74 |
| Dickeya dianthicola ME23 | 0.38 | DZA65_RS13140 | | HTH-type transcriptional repressor PurR | 0.32 | DZA65_RS01310 | | amino acid ABC transporter substrate-binding protein | low | > 75 |
| Dickeya dianthicola 67-19 | 0.38 | HGI48_RS12685 | | HTH-type transcriptional repressor PurR | 0.32 | HGI48_RS01265 | | amino acid ABC transporter substrate-binding protein | low | > 71 |
| Rahnella sp. WP5 | 0.38 | EX31_RS13830 | | HTH-type transcriptional repressor PurR | 0.64 | EX31_RS09435 | | cystine ABC transporter substrate-binding protein | low | > 89 |
| Pantoea sp. MT58 | 0.38 | IAI47_10795 | | HTH-type transcriptional repressor PurR | 0.64 | IAI47_08175 | | cystine ABC transporter substrate-binding protein | low | > 76 |
| Klebsiella michiganensis M5al | 0.38 | BWI76_RS16510 | | transcriptional repressor PurR | 0.66 | BWI76_RS18365 | | cystine ABC transporter substrate-binding protein | low | > 92 |
| Serratia liquefaciens MT49 | 0.38 | IAI46_25050 | | ribose operon transcriptional repressor RbsR | 0.66 | IAI46_15770 | | cystine ABC transporter substrate-binding protein | low | > 86 |
| Erwinia tracheiphila SCR3 | 0.38 | LU632_RS11190 | purR | HTH-type transcriptional repressor PurR | 0.64 | LU632_RS13770 | tcyJ | cystine ABC transporter substrate-binding protein | low | > 74 |
| Escherichia fergusonii Becca | 0.37 | EFB2_02334 | | HTH-type transcriptional repressor PurR | 0.66 | EFB2_02025 | | L-cystine-binding protein FliY | low | > 86 |
| Escherichia coli Nissle 1917 | 0.37 | ECOLIN_RS09245 | | HTH-type transcriptional repressor PurR | 0.65 | ECOLIN_RS10965 | | cystine ABC transporter substrate-binding protein | — | — |
| Escherichia coli ECRC98 | 0.37 | JDDGAC_01975 | purR | HTH-type transcriptional repressor PurR | 0.65 | JDDGAC_00380 | tcyJ | cystine ABC transporter substrate-binding protein | low | > 86 |
| Escherichia coli ECOR38 | 0.37 | HEPCGN_05770 | purR | HTH-type transcriptional repressor PurR | 0.65 | HEPCGN_04145 | tcyJ | cystine ABC transporter substrate-binding protein | low | > 87 |
| Escherichia coli ECRC62 | 0.37 | BNILDI_16695 | purR | HTH-type transcriptional repressor PurR | 0.65 | BNILDI_15200 | tcyJ | cystine ABC transporter substrate-binding protein | 0.51 | 63 |
| Pectobacterium carotovorum WPP14 | 0.37 | HER17_RS21525 | | ribose operon transcriptional repressor RbsR | 0.31 | HER17_RS20280 | | amino acid ABC transporter substrate-binding protein | low | > 75 |
| Escherichia coli BW25113 | 0.37 | b1658 | purR | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | 0.65 | b1920 | fliY | cystine transporter subunit (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 0.37 | MCAODC_18025 | purR | HTH-type transcriptional repressor PurR | 0.65 | MCAODC_19600 | tcyJ | cystine ABC transporter substrate-binding protein | low | > 87 |
| Escherichia coli ECRC100 | 0.37 | OKFHMN_27385 | purR | HTH-type transcriptional repressor PurR | 0.65 | OKFHMN_25790 | tcyJ | cystine ABC transporter substrate-binding protein | low | > 80 |
| Escherichia coli ECRC99 | 0.37 | KEDOAH_00725 | purR | HTH-type transcriptional repressor PurR | 0.65 | KEDOAH_02300 | tcyJ | cystine ABC transporter substrate-binding protein | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.37 | OHPLBJKB_02066 | | HTH-type transcriptional repressor PurR | 0.66 | OHPLBJKB_01809 | | L-cystine-binding protein FliY | low | > 73 |
| Escherichia coli ECRC102 | 0.37 | NIAGMN_00680 | purR | HTH-type transcriptional repressor PurR | 0.65 | NIAGMN_02260 | tcyJ | cystine ABC transporter substrate-binding protein | — | — |
| Escherichia coli ECOR27 | 0.37 | NOLOHH_17905 | purR | HTH-type transcriptional repressor PurR | 0.65 | NOLOHH_16410 | tcyJ | cystine ABC transporter substrate-binding protein | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.37 | GFF3618 | | Purine nucleotide synthesis repressor | 0.66 | GFF1692 | | Cystine ABC transporter, periplasmic cystine-binding protein FliY | low | > 78 |
| Enterobacter sp. TBS_079 | 0.36 | MPMX20_01978 | | HTH-type transcriptional repressor PurR | 0.66 | MPMX20_02845 | | L-cystine-binding protein FliY | low | > 85 |
| Enterobacter asburiae PDN3 | 0.36 | EX28DRAFT_1655 | | Transcriptional regulators | 0.65 | EX28DRAFT_0627 | | ABC-type amino acid transport/signal transduction systems, periplasmic component/domain | low | > 76 |
| Sinorhizobium meliloti 1021 | 0.31 | SM_b20674 | | LacI family transcriptional regulator | 0.36 | SMc03891 | | amino acid-binding periplasmic ABC transporter protein | low | > 103 |
| Azospirillum sp. SherDot2 | 0.28 | MPMX19_02768 | | Ribose operon repressor | 0.32 | MPMX19_05074 | | L-cystine-binding protein TcyA | low | > 112 |
| Caulobacter crescentus NA1000 Δfur | 0.25 | CCNA_03161 | | transcriptional regulator xylR | 0.51 | CCNA_01508 | | cystine-binding protein | low | > 67 |
| Caulobacter crescentus NA1000 | 0.25 | CCNA_03161 | | transcriptional regulator xylR | 0.51 | CCNA_01508 | | cystine-binding protein | low | > 66 |
| Rhizobium sp. OAE497 | 0.25 | ABIE40_RS16645 | | LacI family DNA-binding transcriptional regulator | 0.35 | ABIE40_RS18760 | | amino acid ABC transporter substrate-binding protein | low | > 107 |
| Shewanella sp. ANA-3 | 0.24 | Shewana3_3122 | | LacI family transcription regulator (RefSeq) | 0.20 | Shewana3_0882 | | extracellular solute-binding protein (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.23 | Shew_1111 | | LacI family transcription regulator (RefSeq) | 0.20 | Shew_3166 | | extracellular solute-binding protein (RefSeq) | low | > 60 |
| Shewanella oneidensis MR-1 | 0.23 | SO3516 | | transcriptional regulator, LacI family (NCBI ptt file) | 0.19 | SO1044 | | amino acid ABC transporter, periplasmic amino acid-binding protein (NCBI ptt file) | low | > 76 |
| Phaeobacter inhibens DSM 17395 | 0.22 | PGA1_c07290 | | transcriptional regulator, lacI family | 0.29 | PGA1_65p00110 | | putative amino-acid ABC transporter, periplasmic solute-binding protein | low | > 62 |
| Cupriavidus basilensis FW507-4G11 | 0.22 | RR42_RS34650 | | LacI family transcriptional regulator | 0.34 | RR42_RS04395 | | cysteine ABC transporter substrate-binding protein | low | > 128 |
Not shown: 26 genomes with orthologs for Psyr_2154 only; 8 genomes with orthologs for Psyr_0358 only