Conservation of cofitness between PP_0949 and PP_5146 in Pseudomonas putida KT2440

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0949 putative ATP-binding protein UPF0042 1.0 PP_5146 RNA pyrophosphohydrolase 0.41 6
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_5017 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.98 PfGW456L13_952 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) low > 87
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_07050 glmZ(sRNA)-inactivating NTPase 0.98 AO356_10345 RNA pyrophosphohydrolase 0.42 15
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_3270 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.98 Pf6N2E2_3941 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) low > 103
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_1083 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.98 Pf1N1B4_2283 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) — —
Pseudomonas fluorescens FW300-N2E3 0.90 AO353_05195 glmZ(sRNA)-inactivating NTPase 0.98 AO353_08470 RNA pyrophosphohydrolase 0.42 22
Pseudomonas sp. RS175 0.90 PFR28_00170 RNase adapter protein RapZ 0.98 PFR28_04831 RNA pyrophosphohydrolase low > 88
Pseudomonas simiae WCS417 0.89 PS417_04330 glmZ(sRNA)-inactivating NTPase 0.99 PS417_26990 RNA pyrophosphohydrolase — —
Pseudomonas fluorescens SBW25 0.89 PFLU_RS04385 RNase adapter RapZ 0.99 PFLU_RS28650 RNA pyrophosphohydrolase 0.72 44
Pseudomonas fluorescens SBW25-INTG 0.89 PFLU_RS04385 RNase adapter RapZ 0.99 PFLU_RS28650 RNA pyrophosphohydrolase 0.48 27
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 0.98 Psyr_4843 NUDIX hydrolase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 0.98 Psyr_4843 NUDIX hydrolase low > 86
Pseudomonas sp. S08-1 0.85 OH686_08560 RNase adapter protein RapZ 0.92 OH686_11425 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase low > 80
Pseudomonas stutzeri RCH2 0.84 Psest_3316 Predicted P-loop-containing kinase 0.92 Psest_3863 NTP pyrophosphohydrolases including oxidative damage repair enzymes — —
Alteromonas macleodii MIT1002 0.48 MIT1002_00824 glmZ(sRNA)-inactivating NTPase 0.66 MIT1002_00647 RNA pyrophosphohydrolase low > 70
Serratia liquefaciens MT49 0.48 IAI46_22485 RNase adapter RapZ 0.69 IAI46_20455 RNA pyrophosphohydrolase low > 86
Rahnella sp. WP5 0.47 EX31_RS12385 RNase adapter RapZ 0.68 EX31_RS13205 RNA pyrophosphohydrolase — —
Pectobacterium carotovorum WPP14 0.47 HER17_RS20075 RNase adapter RapZ 0.69 HER17_RS16585 RNA pyrophosphohydrolase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.47 OHPLBJKB_00495 RNase adapter protein RapZ 0.70 OHPLBJKB_00900 RNA pyrophosphohydrolase — —
Escherichia coli ECRC102 0.47 NIAGMN_15685 rapZ RNase adapter RapZ 0.69 NIAGMN_17770 rppH RNA pyrophosphohydrolase — —
Escherichia coli ECRC62 0.47 BNILDI_01810 rapZ RNase adapter RapZ 0.69 BNILDI_10365 rppH RNA pyrophosphohydrolase — —
Escherichia coli ECRC101 0.47 OKFHMN_17925 rapZ RNase adapter RapZ 0.69 OKFHMN_20000 rppH RNA pyrophosphohydrolase — —
Escherichia coli ECRC98 0.47 JDDGAC_21550 rapZ RNase adapter RapZ 0.69 JDDGAC_23665 rppH RNA pyrophosphohydrolase — —
Escherichia fergusonii Becca 0.47 EFB2_00618 RNase adapter protein RapZ 0.70 EFB2_01054 RNA pyrophosphohydrolase — —
Escherichia coli BW25113 0.47 b3205 yhbJ hypothetical protein (NCBI) 0.70 b2830 nudH dinucleoside polyphosphate hydrolase (NCBI) low > 76
Escherichia coli ECRC99 0.47 KEDOAH_10225 rapZ RNase adapter RapZ 0.69 KEDOAH_08130 rppH RNA pyrophosphohydrolase — —
Escherichia coli BL21 0.47 ECD_03070 adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase 0.70 ECD_02678 RNA pyrophosphohydrolase — —
Escherichia coli ECRC101 0.47 MCAODC_08445 rapZ RNase adapter RapZ 0.69 MCAODC_10525 rppH RNA pyrophosphohydrolase — —
Enterobacter asburiae PDN3 0.47 EX28DRAFT_3259 Predicted P-loop-containing kinase 0.70 EX28DRAFT_2905 NTP pyrophosphohydrolases including oxidative damage repair enzymes — —
Escherichia coli ECOR27 0.47 NOLOHH_09725 rapZ RNase adapter RapZ 0.69 NOLOHH_11885 rppH RNA pyrophosphohydrolase — —
Escherichia coli Nissle 1917 0.47 ECOLIN_RS18440 RNase adapter RapZ 0.70 ECOLIN_RS15880 RNA pyrophosphohydrolase — —
Escherichia coli ECOR38 0.47 HEPCGN_16800 rapZ RNase adapter RapZ 0.69 HEPCGN_19255 rppH RNA pyrophosphohydrolase — —
Enterobacter sp. TBS_079 0.47 MPMX20_04111 RNase adapter protein RapZ 0.60 MPMX20_03693 RNA pyrophosphohydrolase — —
Dickeya dianthicola ME23 0.47 DZA65_RS01495 RNase adapter RapZ 0.70 DZA65_RS05295 RNA pyrophosphohydrolase low > 75
Dickeya dadantii 3937 0.47 DDA3937_RS01515 RNase adapter RapZ 0.69 DDA3937_RS04945 RNA pyrophosphohydrolase low > 74
Pantoea sp. MT58 0.47 IAI47_17200 RNase adapter RapZ 0.69 IAI47_03915 RNA pyrophosphohydrolase low > 76
Dickeya dianthicola 67-19 0.47 HGI48_RS01430 RNase adapter RapZ 0.69 HGI48_RS04955 RNA pyrophosphohydrolase — —
Erwinia tracheiphila SCR3 0.47 LU632_RS21295 rapZ RNase adapter RapZ 0.69 LU632_RS06105 rppH RNA pyrophosphohydrolase — —
Klebsiella michiganensis M5al 0.47 BWI76_RS25280 RNase adaptor protein RapZ 0.69 BWI76_RS23275 RNA pyrophosphohydrolase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF2949 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.69 GFF1312 'Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)' transl_table=11 low > 78
Shewanella loihica PV-4 0.47 Shew_3314 hypothetical protein (RefSeq) 0.67 Shew_1038 dinucleoside polyphosphate hydrolase (RefSeq) — —
Shewanella amazonensis SB2B 0.46 Sama_3091 hypothetical protein (RefSeq) 0.67 Sama_0863 dinucleoside polyphosphate hydrolase (RefSeq) — —
Shewanella sp. ANA-3 0.46 Shewana3_0669 hypothetical protein (RefSeq) 0.66 Shewana3_3043 dinucleoside polyphosphate hydrolase (RefSeq) — —
Shewanella oneidensis MR-1 0.46 SO3964 conserved hypothetical protein (NCBI ptt file) 0.66 SO1331 MutT/nudix family protein (NCBI ptt file) low > 76
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_02250 rapZ RNase adapter RapZ 0.65 OKGIIK_15860 RNA pyrophosphohydrolase low > 52
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS19800 RNase adapter RapZ 0.65 ABZR86_RS13805 RNA pyrophosphohydrolase low > 74
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS12860 RNase adapter RapZ 0.65 LRK54_RS09330 RNA pyrophosphohydrolase low > 59
Rhodanobacter denitrificans MT42 0.44 LRK55_RS12560 RNase adapter RapZ 0.65 LRK55_RS08860 RNA pyrophosphohydrolase low > 63
Dechlorosoma suillum PS 0.44 Dsui_0990 putative P-loop-containing kinase 0.51 Dsui_1325 ADP-ribose pyrophosphatase low > 51
Acinetobacter radioresistens SK82 0.41 MPMX26_00547 RNase adapter protein RapZ 0.71 MPMX26_00342 RNA pyrophosphohydrolase 0.65 35
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS19535 nucleotide-binding protein 0.52 HSERO_RS01825 RNA pyrophosphohydrolase low > 78
Castellaniella sp019104865 MT123 0.39 ABCV34_RS14330 RNase adapter RapZ 0.53 ABCV34_RS09820 RNA pyrophosphohydrolase low > 48
Rhodospirillum rubrum S1H 0.37 Rru_A3448 Uncharacterized P-loop ATPase protein UPF0042 (NCBI) 0.34 Rru_A1230 NUDIX hydrolase (NCBI) — —
Phaeobacter inhibens DSM 17395 0.35 PGA1_c01180 Predicted P-loop-containing kinase 0.36 PGA1_c29090 RNA pyrophosphohydrolase RppH — —
Azospirillum sp. SherDot2 0.34 MPMX19_02622 Nucleotide-binding protein 0.34 MPMX19_01945 RNA pyrophosphohydrolase low > 112
Magnetospirillum magneticum AMB-1 0.33 AMB_RS22235 RNase adaptor protein RapZ 0.31 AMB_RS01525 RNA pyrophosphohydrolase low > 64
Azospirillum brasilense Sp245 0.33 AZOBR_RS30485 nucleotide-binding protein 0.32 AZOBR_RS04025 RNA pyrophosphohydrolase low > 97
Dinoroseobacter shibae DFL-12 0.32 Dshi_0209 hypothetical protein (RefSeq) 0.30 Dshi_0092 NUDIX hydrolase (RefSeq) low > 64
Sphingomonas koreensis DSMZ 15582 0.28 Ga0059261_0917 Predicted P-loop-containing kinase 0.31 Ga0059261_4001 NTP pyrophosphohydrolases including oxidative damage repair enzymes low > 68

Not shown: 24 genomes with orthologs for PP_0949 only; 8 genomes with orthologs for PP_5146 only