Conservation of cofitness between PP_3417 and PP_4984 in Pseudomonas putida KT2440

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_3417 D-gluconate transporter 1.0 PP_4984 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.53 8
Pseudomonas syringae pv. syringae B728a 0.83 Psyr_3338 gluconate permease GntT 0.91 Psyr_0454 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.83 Psyr_3338 gluconate permease GntT 0.91 Psyr_0454 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme low > 86
Pseudomonas fluorescens SBW25-INTG 0.77 PFLU_RS23585 GntP family permease 0.89 PFLU_RS28195 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.41 12
Pseudomonas fluorescens SBW25 0.77 PFLU_RS23585 GntP family permease 0.89 PFLU_RS28195 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.76 2
Pseudomonas simiae WCS417 0.77 PS417_21980 permease DsdX 0.89 PS417_26540 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.33 1
Pseudomonas fluorescens FW300-N2E2 0.75 Pf6N2E2_2863 Gluconate permease 0.89 Pf6N2E2_4631 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.30 71
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_03245 permease DsdX 0.90 AO353_08045 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.38 28
Pseudomonas fluorescens FW300-N2C3 0.75 AO356_05055 permease DsdX 0.89 AO356_13570 adenosylmethionine-8-amino-7-oxononanoate aminotransferase low > 104
Pseudomonas sp. RS175 0.75 PFR28_00595 High-affinity gluconate transporter 0.89 PFR28_04208 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.16 27
Pseudomonas fluorescens GW456-L13 0.74 PfGW456L13_1927 Gluconate permease 0.90 PfGW456L13_1044 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.34 74
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_556 Gluconate permease 0.89 Pf1N1B4_2377 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) low > 87
Herbaspirillum seropedicae SmR1 0.72 HSERO_RS05470 permease 0.45 HSERO_RS12250 adenosylmethionine--8-amino-7-oxononanoate aminotransferase low > 78
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS28835 gluconate:H+ symporter (gntT) (from data) 0.41 RR42_RS00925 adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA low > 128
Burkholderia phytofirmans PsJN 0.53 BPHYT_RS13375 permease 0.48 BPHYT_RS02165 adenosylmethionine-8-amino-7-oxononanoate aminotransferase — —
Paraburkholderia sabiae LMG 24235 0.53 QEN71_RS26910 GntP family permease 0.47 QEN71_RS01100 adenosylmethionine--8-amino-7-oxononanoate transaminase — —
Ralstonia solanacearum GMI1000 0.53 RS_RS22870 permease 0.45 RS_RS07430 adenosylmethionine--8-amino-7-oxononanoate transaminase low > 80
Sphingomonas koreensis DSMZ 15582 0.53 Ga0059261_1667 gluconate permease GntT (TC 2.A.8.1.4) 0.30 Ga0059261_3674 adenosylmethionine-8-amino-7-oxononanoate transaminase low > 68
Ralstonia sp. UNC404CL21Col 0.53 ABZR87_RS19095 gluconate:H+ symporter 0.46 ABZR87_RS12335 adenosylmethionine--8-amino-7-oxononanoate transaminase low > 80
Ralstonia solanacearum PSI07 0.53 RPSI07_RS05470 permease 0.46 RPSI07_RS16705 adenosylmethionine--8-amino-7-oxononanoate transaminase low > 81
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS18165 permease 0.45 RALBFv3_RS00815 adenosylmethionine--8-amino-7-oxononanoate transaminase low > 76
Ralstonia solanacearum UW163 0.52 UW163_RS20965 permease 0.45 UW163_RS14150 adenosylmethionine--8-amino-7-oxononanoate transaminase — —
Paraburkholderia graminis OAS925 0.52 ABIE53_003515 GntP family gluconate:H+ symporter 0.49 ABIE53_000580 adenosylmethionine-8-amino-7-oxononanoate aminotransferase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.52 H281DRAFT_04276 gluconate permease GntT 0.47 H281DRAFT_02094 adenosylmethionine-8-amino-7-oxononanoate aminotransferase low > 103
Dyella japonica UNC79MFTsu3.2 0.47 ABZR86_RS12640 gluconate:H+ symporter 0.57 ABZR86_RS10225 adenosylmethionine--8-amino-7-oxononanoate transaminase low > 74
Enterobacter sp. TBS_079 0.46 MPMX20_04302 High-affinity gluconate transporter 0.32 MPMX20_01402 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase low > 85
Pantoea sp. MT58 0.45 IAI47_14085 gluconate transporter 0.30 IAI47_13535 adenosylmethionine--8-amino-7-oxononanoate transaminase low > 76
Dickeya dianthicola 67-19 0.45 HGI48_RS19890 gluconate transporter 0.31 HGI48_RS08670 adenosylmethionine--8-amino-7-oxononanoate transaminase low > 71
Dickeya dianthicola ME23 0.45 DZA65_RS20960 gluconate transporter 0.31 DZA65_RS08960 adenosylmethionine--8-amino-7-oxononanoate transaminase low > 75
Enterobacter asburiae PDN3 0.45 EX28DRAFT_4127 gluconate transporter 0.32 EX28DRAFT_2217 adenosylmethionine-8-amino-7-oxononanoate transaminase low > 76
Serratia liquefaciens MT49 0.44 IAI46_23960 gluconate transporter 0.33 IAI46_06520 adenosylmethionine--8-amino-7-oxononanoate transaminase low > 86
Dickeya dadantii 3937 0.44 DDA3937_RS19775 gluconate transporter 0.32 DDA3937_RS08505 adenosylmethionine--8-amino-7-oxononanoate transaminase low > 74
Escherichia coli ECRC102 0.44 NIAGMN_14755 gntT gluconate transporter 0.31 NIAGMN_04450 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase — —
Escherichia fergusonii Becca 0.44 EFB2_00413 High-affinity gluconate transporter 0.31 EFB2_03331 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase low > 86
Escherichia coli Nissle 1917 0.44 ECOLIN_RS19505 gluconate transporter 0.31 ECOLIN_RS04125 adenosylmethionine--8-amino-7-oxononanoate transaminase low > 52
Escherichia coli BL21 0.44 ECD_03267 gluconate transporter, high-affinity GNT I system 0.31 ECD_00741 7,8-diaminopelargonic acid synthase, PLP-dependent low > 60
Escherichia coli ECRC101 0.44 MCAODC_07515 gntT gluconate transporter 0.31 MCAODC_25620 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase — —
Escherichia coli ECRC98 0.44 JDDGAC_20615 gntT gluconate transporter 0.31 JDDGAC_10040 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase — —
Escherichia coli ECOR27 0.44 NOLOHH_08770 gntT gluconate transporter 0.31 NOLOHH_22775 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase low > 57
Escherichia coli ECRC99 0.44 KEDOAH_11155 gntT gluconate transporter 0.31 KEDOAH_21505 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase — —
Escherichia coli ECOR38 0.44 HEPCGN_15795 gntT gluconate transporter 0.31 HEPCGN_01635 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase low > 85
Escherichia coli BW25113 0.44 b3415 gntT gluconate transporter, high-affinity GNT I system (NCBI) 0.31 b0774 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase (NCBI) low > 76
Escherichia coli ECRC62 0.44 BNILDI_02745 gntT gluconate transporter 0.31 BNILDI_21045 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase — —
Escherichia coli ECRC101 0.44 OKFHMN_16985 gntT gluconate transporter 0.31 OKFHMN_06405 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_00288 High-affinity gluconate transporter 0.31 OHPLBJKB_02939 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase low > 73
Variovorax sp. SCN45 0.44 GFF1885 Gluconate transporter family protein 0.45 GFF145 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) low > 127
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF602 High-affinity gluconate transporter GntT 0.32 GFF670 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) low > 78
Klebsiella michiganensis M5al 0.43 BWI76_RS26615 gluconate:H+ symporter (from data) 0.32 BWI76_RS08755 adenosylmethionine--8-amino-7-oxononanoate transaminase low > 92
Rahnella sp. WP5 0.42 EX31_RS05050 gluconate transporter 0.33 EX31_RS23690 adenosylmethionine--8-amino-7-oxononanoate transaminase low > 89
Echinicola vietnamensis KMM 6221, DSM 17526 0.39 Echvi_2089 gluconate transporter 0.30 Echvi_2790 adenosylmethionine-8-amino-7-oxononanoate transaminase low > 79
Pedobacter sp. GW460-11-11-14-LB5 0.38 CA265_RS01125 gluconate permease 0.38 CA265_RS07530 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.22 23
Alteromonas macleodii MIT1002 0.38 MIT1002_03473 5-keto-D-gluconate transporter 0.32 MIT1002_01378 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase low > 70
Erwinia tracheiphila SCR3 0.35 LU632_RS19170 gntU gluconate transporter 0.32 LU632_RS09125 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase — —
Pectobacterium carotovorum WPP14 0.28 HER17_RS00545 GntP family transporter 0.32 HER17_RS13465 adenosylmethionine--8-amino-7-oxononanoate transaminase low > 75
Acidovorax sp. GW101-3H11 0.28 Ac3H11_3740 Gluconate permease 0.46 Ac3H11_3828 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) low > 79
Fusobacterium nucleatum SB010 0.26 HUW76_01945 GntP family permease 0.44 HUW76_05105 adenosylmethionine--8-amino-7-oxononanoate transaminase low > 35
Vibrio cholerae E7946 ATCC 55056 0.25 CSW01_01470 permease 0.31 CSW01_05640 adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA low > 62
Shewanella loihica PV-4 0.23 Shew_2533 gluconate transporter (RefSeq) 0.29 Shew_1718 adenosylmethionine-8-amino-7-oxononanoate aminotransferase (RefSeq) — —
Shewanella oneidensis MR-1 0.22 SO1771 permease, GntP family (NCBI ptt file) 0.29 SO2741 bioA adenosylmethionine--8-amino-7-oxononanoate aminotransferase (NCBI ptt file) — —
Shewanella sp. ANA-3 0.21 Shewana3_2684 gluconate transporter (RefSeq) 0.28 Shewana3_2520 aminotransferase (RefSeq) — —

Not shown: 1 genomes with orthologs for PP_3417 only; 33 genomes with orthologs for PP_4984 only