| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_4099 | | two-componenent system BarA/UvrY - regulatory subunit | 1.0 | PP_4874 | | 50S ribosomal protein L9 | 0.46 | 14 |
| Pseudomonas sp. RS175 | 0.93 | PFR28_01410 | | Response regulator GacA | 0.81 | PFR28_05135 | | 50S ribosomal protein L9 | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.92 | Psyr_2897 | | regulatory protein, LuxR:Response regulator receiver | 0.81 | Psyr_0584 | | LSU ribosomal protein L9P | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.92 | Psyr_2897 | | regulatory protein, LuxR:Response regulator receiver | 0.81 | Psyr_0584 | | LSU ribosomal protein L9P | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.90 | PFLU_RS10765 | | UvrY/SirA/GacA family response regulator transcription factor | 0.73 | PFLU_RS02650 | | 50S ribosomal protein L9 | — | — |
| Pseudomonas fluorescens SBW25 | 0.90 | PFLU_RS10765 | | UvrY/SirA/GacA family response regulator transcription factor | 0.73 | PFLU_RS02650 | | 50S ribosomal protein L9 | low | > 109 |
| Pseudomonas simiae WCS417 | 0.89 | PS417_10720 | | chemotaxis protein CheY | 0.73 | PS417_02580 | | 50S ribosomal protein L9 | — | — |
| Pseudomonas stutzeri RCH2 | 0.88 | Psest_2260 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | 0.85 | Psest_0697 | | ribosomal protein L9 | low | > 67 |
| Pseudomonas sp. S08-1 | 0.88 | OH686_00335 | | BarA-associated response regulator UvrY ( GacA SirA) | 0.78 | OH686_15935 | | ribosomal protein L9 | low | > 80 |
| Pseudomonas fluorescens FW300-N2E3 | 0.84 | AO353_21830 | | chemotaxis protein CheY | 0.79 | AO353_13225 | | 50S ribosomal protein L9 | low | > 101 |
| Pseudomonas fluorescens FW300-N2C3 | 0.84 | AO356_00355 | | chemotaxis protein CheY | 0.81 | AO356_08585 | | 50S ribosomal protein L9 | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.84 | Pf1N1B4_5619 | | BarA-associated response regulator UvrY (= GacA = SirA) | 0.80 | Pf1N1B4_1398 | | LSU ribosomal protein L9p | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.84 | Pf6N2E2_2022 | | BarA-associated response regulator UvrY (= GacA = SirA) | 0.80 | Pf6N2E2_3602 | | LSU ribosomal protein L9p | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.84 | PfGW456L13_2885 | | BarA-associated response regulator UvrY (= GacA = SirA) | 0.85 | PfGW456L13_139 | | LSU ribosomal protein L9p | low | > 87 |
| Marinobacter adhaerens HP15 | 0.67 | HP15_1567 | | two component transcriptional regulator, LuxR family | 0.70 | HP15_628 | | 50S ribosomal protein L9 | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.66 | CSW01_06135 | | two-component system response regulator UvrY | 0.63 | CSW01_01940 | | 50S ribosomal protein L9 | — | — |
| Erwinia tracheiphila SCR3 | 0.62 | LU632_RS10190 | uvrY | UvrY/SirA/GacA family response regulator transcription factor | 0.58 | LU632_RS21710 | rplI | 50S ribosomal protein L9 | — | — |
| Pantoea sp. MT58 | 0.62 | IAI47_12470 | | UvrY/SirA/GacA family response regulator transcription factor | 0.61 | IAI47_02675 | | 50S ribosomal protein L9 | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.61 | OHPLBJKB_01815 | | Response regulator UvrY | 0.60 | OHPLBJKB_03839 | | 50S ribosomal protein L9 | — | — |
| Escherichia fergusonii Becca | 0.61 | EFB2_02032 | | Response regulator UvrY | 0.60 | EFB2_04332 | | 50S ribosomal protein L9 | low | > 86 |
| Shewanella sp. ANA-3 | 0.61 | Shewana3_1608 | | response regulator (RefSeq) | 0.56 | Shewana3_0704 | rplI | 50S ribosomal protein L9 (RefSeq) | — | — |
| Rahnella sp. WP5 | 0.61 | EX31_RS24145 | | UvrY/SirA/GacA family response regulator transcription factor | 0.62 | EX31_RS08745 | | 50S ribosomal protein L9 | low | > 89 |
| Escherichia coli BW25113 | 0.61 | b1914 | uvrY | response regulator (NCBI) | 0.60 | b4203 | rplI | 50S ribosomal protein L9 (NCBI) | 0.28 | 4 |
| Escherichia coli Nissle 1917 | 0.61 | ECOLIN_RS10900 | | UvrY/SirA/GacA family response regulator transcription factor | 0.60 | ECOLIN_RS24390 | | 50S ribosomal protein L9 | — | — |
| Kangiella aquimarina DSM 16071 | 0.61 | B158DRAFT_1272 | | two component transcriptional regulator, LuxR family | 0.65 | B158DRAFT_2004 | | LSU ribosomal protein L9P | low | > 40 |
| Escherichia coli ECRC62 | 0.60 | BNILDI_15230 | uvrY | UvrY/SirA/GacA family response regulator transcription factor | 0.60 | BNILDI_07125 | rplI | 50S ribosomal protein L9 | — | — |
| Escherichia coli ECRC100 | 0.60 | OKFHMN_25820 | uvrC | excinuclease ABC subunit UvrC | 0.60 | OKFHMN_12100 | rplI | 50S ribosomal protein L9 | — | — |
| Enterobacter sp. TBS_079 | 0.60 | MPMX20_02839 | | Response regulator UvrY | 0.58 | MPMX20_00480 | | 50S ribosomal protein L9 | low | > 85 |
| Enterobacter asburiae PDN3 | 0.60 | EX28DRAFT_0633 | | two component transcriptional regulator, LuxR family | 0.55 | EX28DRAFT_3388 | | ribosomal protein L9 | — | — |
| Escherichia coli ECRC101 | 0.60 | MCAODC_19570 | uvrC | excinuclease ABC subunit UvrC | 0.60 | MCAODC_02615 | rplI | 50S ribosomal protein L9 | — | — |
| Escherichia coli ECOR38 | 0.60 | HEPCGN_04175 | uvrC | excinuclease ABC subunit UvrC | 0.60 | HEPCGN_10330 | rplI | 50S ribosomal protein L9 | — | — |
| Escherichia coli ECRC102 | 0.60 | NIAGMN_02230 | uvrC | excinuclease ABC subunit UvrC | 0.60 | NIAGMN_09950 | rplI | 50S ribosomal protein L9 | — | — |
| Escherichia coli ECRC99 | 0.60 | KEDOAH_02270 | uvrC | excinuclease ABC subunit UvrC | 0.60 | KEDOAH_16055 | rplI | 50S ribosomal protein L9 | — | — |
| Escherichia coli ECOR27 | 0.60 | NOLOHH_16440 | uvrY | UvrY/SirA/GacA family response regulator transcription factor | 0.60 | NOLOHH_04360 | rplI | 50S ribosomal protein L9 | — | — |
| Escherichia coli ECRC98 | 0.60 | JDDGAC_00410 | uvrC | excinuclease ABC subunit UvrC | 0.60 | JDDGAC_15740 | rplI | 50S ribosomal protein L9 | — | — |
| Serratia liquefaciens MT49 | 0.60 | IAI46_09205 | | UvrY/SirA/GacA family response regulator transcription factor | 0.63 | IAI46_01715 | | 50S ribosomal protein L9 | — | — |
| Shewanella oneidensis MR-1 | 0.60 | SO1860 | | DNA-binding response regulator, LuxR family (NCBI ptt file) | 0.58 | SO3927 | rplI | ribosomal protein L9 (NCBI ptt file) | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.60 | GFF1699 | | BarA-associated response regulator UvrY (= GacA = SirA) | 0.60 | GFF857 | | LSU ribosomal protein L9p | — | — |
| Shewanella loihica PV-4 | 0.59 | Shew_1824 | | response regulator (RefSeq) | 0.63 | Shew_3281 | rplI | 50S ribosomal protein L9 (RefSeq) | — | — |
| Dickeya dianthicola 67-19 | 0.59 | HGI48_RS13800 | | UvrY/SirA/GacA family response regulator transcription factor | 0.62 | HGI48_RS17270 | | 50S ribosomal protein L9 | — | — |
| Dickeya dianthicola ME23 | 0.59 | DZA65_RS14290 | | UvrY/SirA/GacA family response regulator transcription factor | 0.62 | DZA65_RS18360 | | 50S ribosomal protein L9 | — | — |
| Dickeya dadantii 3937 | 0.59 | DDA3937_RS13705 | | UvrY/SirA/GacA family response regulator transcription factor | 0.62 | DDA3937_RS17215 | | 50S ribosomal protein L9 | — | — |
| Klebsiella michiganensis M5al | 0.59 | BWI76_RS18335 | | DNA-binding response regulator | 0.50 | BWI76_RS02675 | | 50S ribosomal protein L9 | — | — |
| Pectobacterium carotovorum WPP14 | 0.59 | HER17_RS07710 | | UvrY/SirA/GacA family response regulator transcription factor | 0.59 | HER17_RS03905 | | 50S ribosomal protein L9 | — | — |
| Shewanella amazonensis SB2B | 0.58 | Sama_1607 | | response regulator (RefSeq) | 0.57 | Sama_3061 | rplI | 50S ribosomal protein L9 (RefSeq) | — | — |
| Acinetobacter radioresistens SK82 | 0.58 | MPMX26_00164 | | Response regulator GacA | 0.67 | MPMX26_01155 | | 50S ribosomal protein L9 | low | > 36 |
| Alteromonas macleodii MIT1002 | 0.50 | MIT1002_02154 | | Response regulator UvrY | 0.64 | MIT1002_03816 | | 50S ribosomal protein L9 | low | > 70 |
| Rhodanobacter denitrificans MT42 | 0.46 | LRK55_RS17740 | | response regulator | 0.57 | LRK55_RS02290 | | 50S ribosomal protein L9 | low | > 63 |
| Lysobacter sp. OAE881 | 0.46 | ABIE51_RS11810 | | response regulator | 0.52 | ABIE51_RS09230 | | 50S ribosomal protein L9 | low | > 62 |
| Rhodanobacter sp. FW510-T8 | 0.46 | OKGIIK_07415 | | DNA-binding response regulator | 0.56 | OKGIIK_09590 | rplI | 50S ribosomal protein L9 | low | > 52 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.44 | Xcc-8004.2612.1 | | BarA-associated response regulator UvrY (= GacA = SirA) | 0.58 | Xcc-8004.3313.1 | | LSU ribosomal protein L9p | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.44 | ABZR86_RS02715 | | response regulator | 0.57 | ABZR86_RS08860 | | 50S ribosomal protein L9 | low | > 74 |
| Rhodanobacter denitrificans FW104-10B01 | 0.41 | LRK54_RS17520 | | response regulator | 0.57 | LRK54_RS02535 | | 50S ribosomal protein L9 | low | > 59 |
| Herbaspirillum seropedicae SmR1 | 0.35 | HSERO_RS06015 | | hisitidine kinase | 0.41 | HSERO_RS10385 | | 50S ribosomal protein L9 | — | — |
| Variovorax sp. OAS795 | 0.35 | ABID97_RS12700 | | response regulator transcription factor | 0.42 | ABID97_RS10840 | | 50S ribosomal protein L9 | low | > 91 |
| Desulfovibrio vulgaris Miyazaki F | 0.32 | DvMF_1021 | | two component transcriptional regulator, LuxR family (RefSeq) | 0.39 | DvMF_1352 | rplI | 50S ribosomal protein L9 (RefSeq) | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.32 | Echvi_2030 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | 0.32 | Echvi_2386 | | ribosomal protein L9 | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.31 | DVU2577 | | DNA-binding response regulator, LuxR family (TIGR) | 0.38 | DVU0958 | rplI | ribosomal protein L9 (TIGR) | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.25 | ABZR88_RS16950 | | response regulator transcription factor | 0.32 | ABZR88_RS05035 | | 50S ribosomal protein L9 | — | — |
| Bifidobacterium breve UCC2003 | 0.24 | BBR_RS15990 | | DNA-binding response regulator | 0.25 | BBR_RS11595 | | 50S ribosomal protein L9 | low | > 34 |