Conservation of cofitness between PP_1906 and PP_4261 in Pseudomonas putida KT2440

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1906 ribosomal large subunit pseudouridine synthase C 1.0 PP_4261 cation-transporting P-type ATPase 0.32 18
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.69 Psyr_3421 Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase — —
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.69 Psyr_3421 Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase — —
Pseudomonas sp. RS175 0.90 PFR28_03018 Ribosomal large subunit pseudouridine synthase C 0.76 PFR28_01083 putative copper-importing P-type ATPase A low > 88
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.76 Pf6N2E2_2318 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) low > 103
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_20125 23S rRNA pseudouridylate synthase 0.77 AO356_02465 carbonate dehydratase low > 104
Pseudomonas simiae WCS417 0.88 PS417_21480 23S rRNA pseudouridylate synthase 0.76 PS417_20760 carbonate dehydratase — —
Pseudomonas fluorescens FW300-N1B4 0.88 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.78 Pf1N1B4_3871 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) — —
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.76 PFLU_RS22370 cadmium-translocating P-type ATPase low > 109
Pseudomonas fluorescens SBW25 0.88 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.76 PFLU_RS22370 cadmium-translocating P-type ATPase low > 109
Pseudomonas fluorescens FW300-N2E3 0.87 AO353_01405 23S rRNA pseudouridylate synthase 0.76 AO353_00640 carbonate dehydratase — —
Pseudomonas stutzeri RCH2 0.87 Psest_1680 pseudouridine synthase, RluA family 0.70 Psest_2533 copper-(or silver)-translocating P-type ATPase/heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase — —
Pseudomonas fluorescens GW456-L13 0.86 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.77 PfGW456L13_4067 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) low > 87
Pseudomonas sp. S08-1 0.86 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase 0.67 OH686_02220 cadmium-translocating P-type ATPase — —
Alteromonas macleodii MIT1002 0.56 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C 0.35 MIT1002_02134 putative copper-importing P-type ATPase A low > 70
Shewanella loihica PV-4 0.55 Shew_1594 RluA family pseudouridine synthase (RefSeq) 0.39 Shew_1990 heavy metal translocating P-type ATPase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.55 Sama_1988 pseudouridylate synthase (RefSeq) 0.39 Sama_1796 cation transporter E1-E2 family ATPase (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_1770 ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) 0.37 B158DRAFT_1972 copper-(or silver)-translocating P-type ATPase/heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase low > 40
Shewanella sp. ANA-3 0.53 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) 0.37 Shewana3_2112 heavy metal translocating P-type ATPase (RefSeq) low > 73
Marinobacter adhaerens HP15 0.51 HP15_2221 pseudouridine synthase, RluA family 0.39 HP15_2113 heavy-metal transporting P-type ATPase — —
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.39 CSW01_07205 copper-translocating P-type ATPase low > 62
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C 0.31 HSERO_RS16065 cation transporter low > 78
Rhodanobacter denitrificans MT42 0.46 LRK55_RS17750 RluA family pseudouridine synthase 0.24 LRK55_RS17430 heavy metal translocating P-type ATPase low > 63
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS17895 RluA family pseudouridine synthase 0.25 LRK54_RS17205 heavy metal translocating P-type ATPase low > 59
Lysobacter sp. OAE881 0.45 ABIE51_RS11800 RluA family pseudouridine synthase 0.28 ABIE51_RS03820 heavy metal translocating P-type ATPase low > 62
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_07405 rluA 23S rRNA pseudouridine(955/2504/2580) synthase 0.22 OKGIIK_07680 ATPase P — —
Dechlorosoma suillum PS 0.44 Dsui_2437 pseudouridine synthase, RluA family 0.42 Dsui_1625 copper/silver-translocating P-type ATPase — —
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS14155 pseudouridine synthase 0.33 RR42_RS12920 carbonate dehydratase low > 128
Ralstonia solanacearum PSI07 0.44 RPSI07_RS19085 RluA family pseudouridine synthase 0.33 RPSI07_RS17750 copper-translocating P-type ATPase low > 81
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS10090 RluA family pseudouridine synthase 0.35 ABZR87_RS11135 heavy metal translocating P-type ATPase low > 80
Ralstonia solanacearum GMI1000 0.44 RS_RS05155 RluA family pseudouridine synthase 0.33 RS_RS06385 copper-translocating P-type ATPase low > 80
Ralstonia solanacearum IBSBF1503 0.43 RALBFv3_RS14375 RluA family pseudouridine synthase 0.34 RALBFv3_RS15605 copper-translocating P-type ATPase low > 76
Ralstonia solanacearum UW163 0.43 UW163_RS11840 RluA family pseudouridine synthase 0.34 UW163_RS13065 copper-translocating P-type ATPase — —
Variovorax sp. SCN45 0.43 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) 0.28 GFF6966 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) low > 127
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS02725 RluA family pseudouridine synthase 0.32 ABZR86_RS04425 heavy metal translocating P-type ATPase low > 74
Variovorax sp. OAS795 0.43 ABID97_RS08250 RluA family pseudouridine synthase 0.28 ABID97_RS16235 cation-translocating P-type ATPase low > 91
Acidovorax sp. GW101-3H11 0.42 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.28 Ac3H11_966 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.31 GFF4133 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) low > 90
Rhizobium sp. OAE497 0.30 ABIE40_RS09915 RluA family pseudouridine synthase 0.23 ABIE40_RS26135 cation-translocating P-type ATPase low > 107
Rhodospirillum rubrum S1H 0.28 Rru_A2659 Pseudouridine synthase, RluD (NCBI) 0.25 Rru_A3324 copper-translocating P-type ATPase (NCBI) — —
Magnetospirillum magneticum AMB-1 0.26 AMB_RS15620 RluA family pseudouridine synthase 0.26 AMB_RS22095 cadmium-translocating P-type ATPase — —
Azospirillum sp. SherDot2 0.25 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C 0.24 MPMX19_00211 putative copper-importing P-type ATPase A low > 112
Dinoroseobacter shibae DFL-12 0.23 Dshi_0315 pseudouridine synthase, RluA family (RefSeq) 0.22 Dshi_0667 heavy metal translocating P-type ATPase (RefSeq) low > 64
Caulobacter crescentus NA1000 Δfur 0.22 CCNA_02059 ribosomal large subunit pseudouridine synthase C 0.22 CCNA_01473 E1-E2 cation pump ATPase fixI low > 67
Caulobacter crescentus NA1000 0.22 CCNA_02059 ribosomal large subunit pseudouridine synthase C 0.22 CCNA_01473 E1-E2 cation pump ATPase fixI low > 66
Azospirillum brasilense Sp245 0.22 AZOBR_RS06905 pseudouridine synthase 0.25 AZOBR_RS01150 ATPase P — —

Not shown: 39 genomes with orthologs for PP_1906 only; 4 genomes with orthologs for PP_4261 only