| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_0850 | | Dual-specificity RNA methyltransferase RlmN | 1.0 | PP_3415 | | Transcriptional regulator, LacI family | 0.34 | 6 |
| Pseudomonas fluorescens FW300-N2C3 | 0.88 | AO356_06605 | | 23S rRNA (adenine(2503)-C2)-methyltransferase | 0.67 | AO356_05065 | | LacI family transcriptional regulator | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.88 | Pf6N2E2_3181 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | 0.67 | Pf6N2E2_2865 | | Gluconate utilization system Gnt-I transcriptional repressor | — | — |
| Pseudomonas sp. RS175 | 0.88 | PFR28_00294 | | Dual-specificity RNA methyltransferase RlmN | 0.66 | PFR28_00593 | | HTH-type transcriptional regulator GntR | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.87 | AO353_15875 | | 23S rRNA (adenine(2503)-C2)-methyltransferase | 0.66 | AO353_03255 | | LacI family transcriptional regulator | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.87 | PfGW456L13_4865 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | 0.67 | PfGW456L13_1925 | | Gluconate utilization system Gnt-I transcriptional repressor | low | > 87 |
| Pseudomonas fluorescens SBW25 | 0.87 | PFLU_RS24815 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.66 | PFLU_RS23595 | | LacI family DNA-binding transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.87 | PFLU_RS24815 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.66 | PFLU_RS23595 | | LacI family DNA-binding transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.87 | Pf1N1B4_857 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | 0.67 | Pf1N1B4_558 | | Gluconate utilization system Gnt-I transcriptional repressor | — | — |
| Pseudomonas simiae WCS417 | 0.87 | PS417_23160 | | 50S rRNA methyltransferase | 0.66 | PS417_21990 | | LacI family transcriptional regulator | low | > 88 |
| Pseudomonas syringae pv. syringae B728a | 0.86 | Psyr_1245 | | 23S rRNA m(2)A-2503 methyltransferase | 0.68 | Psyr_3336 | | transcriptional regulator, LacI family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.86 | Psyr_1245 | | 23S rRNA m(2)A-2503 methyltransferase | 0.68 | Psyr_3336 | | transcriptional regulator, LacI family | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.84 | Psest_1259 | | 23S rRNA m2A2503 methyltransferase | 0.48 | Psest_2126 | | Transcriptional regulators | low | > 67 |
| Escherichia coli ECRC62 | 0.56 | BNILDI_12160 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.29 | BNILDI_02870 | gntR | gluconate operon transcriptional repressor GntR | — | — |
| Escherichia coli ECOR38 | 0.56 | HEPCGN_20830 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.29 | HEPCGN_15660 | gntR | gluconate operon transcriptional repressor GntR | low | > 85 |
| Escherichia coli BW25113 | 0.56 | b2517 | yfgB | predicted enzyme (NCBI) | 0.29 | b3438 | gntR | DNA-binding transcriptional repressor (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 0.56 | OKFHMN_21710 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.29 | OKFHMN_16835 | gntR | gluconate operon transcriptional repressor GntR | — | — |
| Escherichia coli Nissle 1917 | 0.56 | ECOLIN_RS14300 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.29 | ECOLIN_RS19675 | | gluconate operon transcriptional repressor GntR | low | > 52 |
| Escherichia coli BL21 | 0.56 | ECD_02409 | | dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent | 0.28 | ECD_03289 | | d-gluconate inducible gluconate regulon transcriptional repressor | low | > 60 |
| Escherichia coli ECRC102 | 0.56 | NIAGMN_19480 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.29 | NIAGMN_14605 | gntR | gluconate operon transcriptional repressor GntR | — | — |
| Escherichia coli ECRC98 | 0.56 | JDDGAC_25385 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.29 | JDDGAC_20465 | gntR | gluconate operon transcriptional repressor GntR | — | — |
| Escherichia coli ECRC99 | 0.56 | KEDOAH_06510 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.29 | KEDOAH_11305 | gntR | gluconate operon transcriptional repressor GntR | — | — |
| Escherichia coli ECRC101 | 0.56 | MCAODC_12240 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.29 | MCAODC_07365 | gntR | gluconate operon transcriptional repressor GntR | — | — |
| Escherichia coli ECOR27 | 0.56 | NOLOHH_13360 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.28 | NOLOHH_08635 | gntR | gluconate operon transcriptional repressor GntR | low | > 57 |
| Escherichia fergusonii Becca | 0.56 | EFB2_01373 | | Dual-specificity RNA methyltransferase RlmN | 0.29 | EFB2_00382 | | HTH-type transcriptional regulator GntR | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.55 | OHPLBJKB_01192 | | Dual-specificity RNA methyltransferase RlmN | 0.29 | OHPLBJKB_00264 | | HTH-type transcriptional regulator GntR | 0.57 | 68 |
| Enterobacter asburiae PDN3 | 0.55 | EX28DRAFT_0126 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase | 0.29 | EX28DRAFT_4274 | | transcriptional regulator, LacI family | low | > 76 |
| Enterobacter sp. TBS_079 | 0.55 | MPMX20_03395 | | Dual-specificity RNA methyltransferase RlmN | 0.29 | MPMX20_04319 | | HTH-type transcriptional regulator GntR | low | > 85 |
| Klebsiella michiganensis M5al | 0.55 | BWI76_RS21095 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.30 | BWI76_RS06150 | | transcriptional regulator | low | > 92 |
| Dickeya dadantii 3937 | 0.55 | DDA3937_RS15480 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.32 | DDA3937_RS19785 | | gluconate operon transcriptional repressor GntR | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.55 | HER17_RS06085 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.29 | HER17_RS16515 | | LacI family DNA-binding transcriptional regulator | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.54 | LU632_RS17815 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.30 | LU632_RS19160 | gntR | gluconate operon transcriptional repressor GntR | low | > 74 |
| Dickeya dianthicola ME23 | 0.54 | DZA65_RS16665 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.32 | DZA65_RS20970 | | gluconate operon transcriptional repressor GntR | low | > 75 |
| Cupriavidus basilensis FW507-4G11 | 0.54 | RR42_RS13155 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.30 | RR42_RS03860 | | transcriptional regulator | — | — |
| Serratia liquefaciens MT49 | 0.54 | IAI46_19290 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.28 | IAI46_23965 | | gluconate operon transcriptional repressor GntR | low | > 86 |
| Dickeya dianthicola 67-19 | 0.54 | HGI48_RS15590 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.32 | HGI48_RS19900 | | gluconate operon transcriptional repressor GntR | low | > 71 |
| Rahnella sp. WP5 | 0.54 | EX31_RS20525 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.30 | EX31_RS05060 | | gluconate operon transcriptional repressor GntR | low | > 89 |
| Ralstonia sp. UNC404CL21Col | 0.54 | ABZR87_RS10900 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.28 | ABZR87_RS18255 | | LacI family DNA-binding transcriptional regulator | low | > 80 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.54 | GFF2414 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | 0.28 | GFF406 | | Transcriptional regulator, LacI family | low | > 78 |
| Ralstonia solanacearum PSI07 | 0.54 | RPSI07_RS18115 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.28 | RPSI07_RS07575 | | LacI family DNA-binding transcriptional regulator | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.54 | RS_RS06070 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.27 | RS_RS24865 | | LacI family DNA-binding transcriptional regulator | low | > 80 |
| Ralstonia solanacearum UW163 | 0.54 | UW163_RS12725 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.26 | UW163_RS16860 | | GntR family transcriptional regulator | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.54 | RALBFv3_RS15260 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.26 | RALBFv3_RS16125 | | GntR family transcriptional regulator | — | — |
| Pantoea sp. MT58 | 0.53 | IAI47_05040 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.29 | IAI47_01650 | | gluconate operon transcriptional repressor GntR | low | > 76 |
| Vibrio cholerae E7946 ATCC 55056 | 0.53 | CSW01_03930 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.33 | CSW01_01485 | | transcriptional regulator | low | > 62 |
| Paraburkholderia sabiae LMG 24235 | 0.53 | QEN71_RS05965 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.32 | QEN71_RS10090 | | LacI family DNA-binding transcriptional regulator | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.52 | H281DRAFT_00514 | | 23S rRNA m(2)A-2503 methyltransferase | 0.31 | H281DRAFT_03425 | | transcriptional regulator, LacI family | — | — |
| Burkholderia phytofirmans PsJN | 0.52 | BPHYT_RS12590 | | dual-specificity RNA methyltransferase RlmN | 0.46 | BPHYT_RS00410 | | LacI family transcription regulator | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.52 | ABIE53_002744 | | 23S rRNA (adenine2503-C2)-methyltransferase | 0.31 | ABIE53_005334 | | LacI family gluconate utilization system Gnt-I transcriptional repressor | low | > 113 |
| Herbaspirillum seropedicae SmR1 | 0.51 | HSERO_RS14810 | | 50S rRNA methyltransferase | 0.46 | HSERO_RS05460 | | LacI family transcription regulator | — | — |
| Acidovorax sp. GW101-3H11 | 0.51 | Ac3H11_1791 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | 0.55 | Ac3H11_3230 | | Gluconate utilization system Gnt-I transcriptional repressor | low | > 79 |
| Alteromonas macleodii MIT1002 | 0.50 | MIT1002_02791 | | Dual-specificity RNA methyltransferase RlmN | 0.31 | MIT1002_03475 | | Gluconate utilization system GNT-I transcriptional repressor | 0.72 | 28 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.50 | GFF4866 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | 0.56 | GFF5509 | | Gluconate utilization system Gnt-I transcriptional repressor | low | > 90 |
| Variovorax sp. SCN45 | 0.49 | GFF992 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) | 0.31 | GFF7257 | | KEGG: LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor | low | > 127 |
| Variovorax sp. OAS795 | 0.49 | ABID97_RS14210 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.29 | ABID97_RS01205 | | LacI family DNA-binding transcriptional regulator | low | > 91 |
| Castellaniella sp019104865 MT123 | 0.49 | ABCV34_RS02610 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.53 | ABCV34_RS12285 | | LacI family DNA-binding transcriptional regulator | low | > 48 |
| Azospirillum brasilense Sp245 | 0.46 | AZOBR_RS00800 | | 50S rRNA methyltransferase | 0.39 | AZOBR_RS15720 | | LacI family transcription regulator | — | — |
| Azospirillum sp. SherDot2 | 0.46 | MPMX19_02413 | | Dual-specificity RNA methyltransferase RlmN | 0.45 | MPMX19_05332 | | HTH-type transcriptional regulator GntR | low | > 112 |
| Phaeobacter inhibens DSM 17395 | 0.44 | PGA1_c36240 | | ribosomal RNA large subunit methyltransferase N | 0.29 | PGA1_c33870 | | putative HTH-type transcriptional regulator GntR | low | > 62 |
| Agrobacterium fabrum C58 | 0.43 | Atu2673 | | hypothetical protein | 0.27 | Atu4685 | | LacI family transcriptional regulator | low | > 89 |
| Dinoroseobacter shibae DFL-12 | 0.43 | Dshi_3311 | | radical SAM enzyme, Cfr family (RefSeq) | 0.28 | Dshi_3322 | | transcriptional regulator, LacI family (RefSeq) | low | > 64 |
| Sinorhizobium meliloti 1021 | 0.41 | SMc03831 | | hypothetical protein | 0.29 | SM_b20667 | | LacI family transcriptional regulator | low | > 103 |
| Rhizobium sp. OAE497 | 0.41 | ABIE40_RS18200 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.29 | ABIE40_RS04445 | | LacI family DNA-binding transcriptional regulator | low | > 107 |
Not shown: 37 genomes with orthologs for PP_0850 only; 0 genomes with orthologs for PP_3415 only