Conservation of cofitness between PP_5217 and PP_2375 in Pseudomonas putida KT2440

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5217 Polyphosphate kinase 1.0 PP_2375 cobalamin-dependent methionine synthase 0.38 9
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_4453 Polyphosphate kinase (EC 2.7.4.1) 0.88 Pf6N2E2_2068 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) low > 103
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_0293 Polyphosphate kinase 0.87 Psyr_2464 methionine synthase (B12-dependent) 0.46 41
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_0293 Polyphosphate kinase 0.87 Psyr_2464 methionine synthase (B12-dependent) low > 86
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_2208 Polyphosphate kinase (EC 2.7.4.1) 0.88 Pf1N1B4_5661 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) low > 87
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_874 Polyphosphate kinase (EC 2.7.4.1) 0.88 PfGW456L13_2847 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) low > 87
Pseudomonas fluorescens FW300-N2E3 0.90 AO353_08885 polyphosphate kinase 0.88 AO353_21615 methionine synthase low > 101
Pseudomonas fluorescens FW300-N2C3 0.90 AO356_12895 polyphosphate kinase 0.88 AO356_00545 methionine synthase low > 104
Pseudomonas sp. RS175 0.90 PFR28_04345 Polyphosphate kinase 0.88 PFR28_01369 Methionine synthase low > 88
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS29095 polyphosphate kinase 1 0.88 PFLU_RS13000 methionine synthase low > 109
Pseudomonas fluorescens SBW25 0.90 PFLU_RS29095 polyphosphate kinase 1 0.88 PFLU_RS13000 methionine synthase 0.63 104
Pseudomonas simiae WCS417 0.89 PS417_27435 polyphosphate kinase 0.88 PS417_12310 methionine synthase 0.39 48
Pseudomonas stutzeri RCH2 0.85 Psest_3732 polyphosphate kinase 1 0.89 Psest_2102 5-methyltetrahydrofolate--homocysteine methyltransferase low > 67
Pseudomonas sp. S08-1 0.84 OH686_13995 polyphosphate kinase 1 0.90 OH686_03335 methionine synthase low > 80
Marinobacter adhaerens HP15 0.59 HP15_3334 polyphosphate kinase 0.69 HP15_1792 B12-dependent methionine synthase low > 73
Acinetobacter radioresistens SK82 0.57 MPMX26_02335 Polyphosphate kinase 0.68 MPMX26_02351 Methionine synthase low > 36
Dechlorosoma suillum PS 0.51 Dsui_2814 polyphosphate kinase 1 0.64 Dsui_0779 5-methyltetrahydrofolate--homocysteine methyltransferase — —
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_2312 polyphosphate kinase 1 0.65 B158DRAFT_2466 methionine synthase (B12-dependent) (EC 2.1.1.13) low > 40
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS06305 polyphosphate kinase 0.62 HSERO_RS21740 methionine synthase 0.26 40
Castellaniella sp019104865 MT123 0.45 ABCV34_RS15580 polyphosphate kinase 1 0.58 ABCV34_RS14560 methionine synthase low > 48
Synechococcus elongatus PCC 7942 0.36 Synpcc7942_1566 ppk polyphosphate kinase 0.22 Synpcc7942_1372 metH methionine synthase (B12-dependent) — —
Rhodospirillum rubrum S1H 0.35 Rru_A2161 Polyphosphate kinase (NCBI) 0.20 Rru_A1531 5-methyltetrahydrofolate--homocysteine methyltransferase (NCBI) — —
Magnetospirillum magneticum AMB-1 0.34 AMB_RS14295 RNA degradosome polyphosphate kinase 0.22 AMB_RS02225 methionine synthase — —
Sinorhizobium meliloti 1021 0.34 SMc00618 polyphosphate kinase 0.60 SMc03112 B12-dependent methionine synthase low > 103
Rhodopseudomonas palustris CGA009 0.33 TX73_015770 RNA degradosome polyphosphate kinase 0.61 TX73_019180 methionine synthase low > 86
Rhizobium sp. OAE497 0.33 ABIE40_RS06575 RNA degradosome polyphosphate kinase 0.61 ABIE40_RS12135 methionine synthase low > 107
Azospirillum sp. SherDot2 0.33 MPMX19_01149 Polyphosphate kinase 0.22 MPMX19_00637 Methionine synthase — —
Mycobacterium tuberculosis H37Rv 0.32 Rv2984 Polyphosphate kinase PPK (polyphosphoric acid kinase) (ATP-polyphosphate phosphotransferase) 0.20 Rv2124c 5-methyltetrahydrofolate--homocystein methyltransferase MetH (methionine synthase, vitamin-B12 dependent isozyme) (ms) — —
Agrobacterium fabrum C58 0.32 Atu1144 polyphosphate kinase 0.61 Atu2155 methionine synthase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.29 CA264_11200 RNA degradosome polyphosphate kinase 0.61 CA264_16785 methionine synthase low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.28 ABZR88_RS04845 polyphosphate kinase 1 0.61 ABZR88_RS20930 methionine synthase 0.62 8
Escherichia coli ECOR38 0.27 HEPCGN_20965 ppk1 polyphosphate kinase 1 0.65 HEPCGN_11885 metH methionine synthase low > 85
Escherichia coli ECRC102 0.27 NIAGMN_19570 ppk1 polyphosphate kinase 1 0.65 NIAGMN_10990 metH methionine synthase — —
Escherichia coli ECRC101 0.27 OKFHMN_21800 ppk1 polyphosphate kinase 1 0.65 OKFHMN_13240 metH methionine synthase — —
Escherichia coli ECOR27 0.27 NOLOHH_13450 ppk1 polyphosphate kinase 1 0.65 NOLOHH_05380 metH methionine synthase — —
Escherichia coli BL21 0.27 ECD_02393 polyphosphate kinase, component of RNA degradosome 0.65 ECD_03891 homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_01225 Polyphosphate kinase 0.65 OHPLBJKB_04030 Methionine synthase low > 73
Escherichia coli ECRC62 0.27 BNILDI_12260 ppk1 polyphosphate kinase 1 0.65 BNILDI_06140 metH methionine synthase — —
Escherichia coli BW25113 0.27 b2501 ppk polyphosphate kinase (NCBI) 0.65 b4019 metH B12-dependent methionine synthase (NCBI) low > 76
Escherichia coli Nissle 1917 0.27 ECOLIN_RS14200 polyphosphate kinase 1 0.65 ECOLIN_RS23160 methionine synthase low > 52
Escherichia coli ECRC101 0.27 MCAODC_12330 ppk1 polyphosphate kinase 1 0.65 MCAODC_03740 metH methionine synthase — —
Escherichia coli ECRC99 0.27 KEDOAH_06420 ppk1 polyphosphate kinase 1 0.65 KEDOAH_14920 metH methionine synthase — —
Escherichia coli ECRC98 0.27 JDDGAC_25745 ppk1 polyphosphate kinase 1 0.65 JDDGAC_16865 metH methionine synthase — —
Escherichia fergusonii Becca 0.27 EFB2_01397 Polyphosphate kinase 0.65 EFB2_04592 Methionine synthase low > 86
Pectobacterium carotovorum WPP14 0.27 HER17_RS06425 polyphosphate kinase 1 0.65 HER17_RS02310 methionine synthase low > 75
Dickeya dadantii 3937 0.27 DDA3937_RS15150 polyphosphate kinase 1 0.65 DDA3937_RS19040 methionine synthase low > 74
Klebsiella michiganensis M5al 0.27 BWI76_RS20995 RNA degradosome polyphosphate kinase 0.65 BWI76_RS01685 methionine synthase low > 92
Dickeya dianthicola ME23 0.27 DZA65_RS16045 polyphosphate kinase 1 0.65 DZA65_RS20250 methionine synthase low > 75
Pedobacter sp. GW460-11-11-14-LB5 0.27 CA265_RS09830 polyphosphate kinase 1 0.61 CA265_RS23440 methionine synthase low > 88
Dickeya dianthicola 67-19 0.27 HGI48_RS15225 polyphosphate kinase 1 0.64 HGI48_RS19130 methionine synthase low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.27 GFF2167 Polyphosphate kinase (EC 2.7.4.1) 0.65 GFF1358 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) low > 78
Enterobacter sp. TBS_079 0.26 MPMX20_03356 Polyphosphate kinase 0.65 MPMX20_00235 Methionine synthase low > 85
Serratia liquefaciens MT49 0.26 IAI46_18915 polyphosphate kinase 1 0.66 IAI46_23155 methionine synthase low > 86
Rahnella sp. WP5 0.26 EX31_RS22680 polyphosphate kinase 1 0.66 EX31_RS11760 methionine synthase low > 89
Enterobacter asburiae PDN3 0.26 EX28DRAFT_0166 polyphosphate kinase 1 0.65 EX28DRAFT_4326 methionine synthase (B12-dependent) (EC 2.1.1.13) low > 76
Pantoea sp. MT58 0.26 IAI47_05155 polyphosphate kinase 1 0.66 IAI47_17990 methionine synthase low > 76
Vibrio cholerae E7946 ATCC 55056 0.26 CSW01_03780 polyphosphate kinase 1 0.65 CSW01_02060 methionine synthase 0.56 3
Parabacteroides merdae CL09T00C40 0.26 HMPREF1078_RS16770 RNA degradosome polyphosphate kinase 0.49 HMPREF1078_RS14955 methionine synthase low > 61
Shewanella amazonensis SB2B 0.25 Sama_2011 polyphosphate kinase (RefSeq) 0.63 Sama_0758 metH B12-dependent methionine synthase (RefSeq) low > 62
Shewanella sp. ANA-3 0.25 Shewana3_2417 polyphosphate kinase (RefSeq) 0.62 Shewana3_3282 metH B12-dependent methionine synthase (RefSeq) low > 73
Shewanella loihica PV-4 0.25 Shew_3079 polyphosphate kinase (RefSeq) 0.62 Shew_0710 metH B12-dependent methionine synthase (RefSeq) low > 60

Not shown: 36 genomes with orthologs for PP_5217 only; 2 genomes with orthologs for PP_2375 only