| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_1906 | | ribosomal large subunit pseudouridine synthase C | 1.0 | PP_1319 | | Ubiquinol--cytochrome c reductase, cytochrome c1 | 0.34 | 8 |
| Pseudomonas sp. RS175 | 0.90 | PFR28_03018 | | Ribosomal large subunit pseudouridine synthase C | 0.90 | PFR28_03604 | | Ammonia monooxygenase gamma subunit | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.89 | Pf6N2E2_5944 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.89 | Pf6N2E2_5339 | | ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.89 | AO356_20125 | | 23S rRNA pseudouridylate synthase | 0.90 | AO356_17075 | | cytochrome C | low | > 104 |
| Pseudomonas simiae WCS417 | 0.88 | PS417_21480 | | 23S rRNA pseudouridylate synthase | 0.85 | PS417_04165 | | cytochrome C | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.88 | Pf1N1B4_459 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.88 | Pf1N1B4_960 | | ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.88 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.85 | PFLU_RS04205 | | cytochrome c1 | 0.28 | 34 |
| Pseudomonas fluorescens SBW25 | 0.88 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.85 | PFLU_RS04205 | | cytochrome c1 | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.87 | AO353_01405 | | 23S rRNA pseudouridylate synthase | 0.87 | AO353_15255 | | cytochrome C | — | — |
| Pseudomonas stutzeri RCH2 | 0.87 | Psest_1680 | | pseudouridine synthase, RluA family | 0.79 | Psest_3277 | | Cytochrome c1 | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.86 | PfGW456L13_2097 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.90 | PfGW456L13_1636 | | ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit | low | > 87 |
| Pseudomonas sp. S08-1 | 0.86 | OH686_22095 | | LSU rRNA pseudouridine(955/2504/2580) synthase | 0.89 | OH686_08380 | | Ubiquinol-cytochrome C reductase, cytochrome C1 subunit | — | — |
| Alteromonas macleodii MIT1002 | 0.56 | MIT1002_01725 | | Ribosomal large subunit pseudouridine synthase C | 0.48 | MIT1002_00816 | | Cytochrome c1 precursor | low | > 70 |
| Shewanella loihica PV-4 | 0.55 | Shew_1594 | | RluA family pseudouridine synthase (RefSeq) | 0.45 | Shew_0572 | | cytochrome c1 (RefSeq) | — | — |
| Shewanella amazonensis SB2B | 0.55 | Sama_1988 | | pseudouridylate synthase (RefSeq) | 0.48 | Sama_3019 | | ubiquinol-cytochrome c reductase cytochrome c1 subunit (RefSeq) | low | > 62 |
| Kangiella aquimarina DSM 16071 | 0.55 | B158DRAFT_1770 | | ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) | 0.42 | B158DRAFT_2102 | | Cytochrome c1 | — | — |
| Shewanella sp. ANA-3 | 0.53 | Shewana3_2566 | | ribosomal large subunit pseudouridine synthase C (RefSeq) | 0.48 | Shewana3_0603 | | cytochrome c1 (RefSeq) | low | > 73 |
| Marinobacter adhaerens HP15 | 0.51 | HP15_2221 | | pseudouridine synthase, RluA family | 0.51 | HP15_547 | | ubiquinol-cytochrome c reductase, cytochrome c1 | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.51 | CSW01_10130 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.47 | CSW01_03055 | | cytochrome c1 | low | > 62 |
| Herbaspirillum seropedicae SmR1 | 0.46 | HSERO_RS09415 | | ribosomal large subunit pseudouridine synthase C | 0.37 | HSERO_RS20235 | | cytochrome C | low | > 78 |
| Rhodanobacter denitrificans MT42 | 0.46 | LRK55_RS17750 | | RluA family pseudouridine synthase | 0.35 | LRK55_RS13490 | | cytochrome c1 | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.45 | LRK54_RS17895 | | RluA family pseudouridine synthase | 0.35 | LRK54_RS13775 | | cytochrome c1 | — | — |
| Lysobacter sp. OAE881 | 0.45 | ABIE51_RS11800 | | RluA family pseudouridine synthase | 0.41 | ABIE51_RS15430 | | cytochrome c1 | low | > 62 |
| Paraburkholderia graminis OAS925 | 0.45 | ABIE53_003058 | | 23S rRNA pseudouridine955/2504/2580 synthase | 0.37 | ABIE53_003683 | | ubiquinol-cytochrome c reductase cytochrome c1 subunit | low | > 113 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_07405 | rluA | 23S rRNA pseudouridine(955/2504/2580) synthase | 0.35 | OKGIIK_03015 | | cytochrome c1 | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.44 | QEN71_RS04500 | | RluA family pseudouridine synthase | 0.35 | QEN71_RS27775 | | cytochrome c1 | — | — |
| Dechlorosoma suillum PS | 0.44 | Dsui_2437 | | pseudouridine synthase, RluA family | 0.40 | Dsui_1814 | | cytochrome c1 | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.44 | Xcc-8004.2616.1 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.40 | Xcc-8004.2230.1 | | ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit | low | > 74 |
| Cupriavidus basilensis FW507-4G11 | 0.44 | RR42_RS14155 | | pseudouridine synthase | 0.37 | RR42_RS18815 | | cytochrome C | 0.35 | 66 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.44 | H281DRAFT_04340 | | 23S rRNA pseudouridine955/2504/2580 synthase | 0.37 | H281DRAFT_05671 | | ubiquinol-cytochrome c reductase cytochrome c1 subunit | — | — |
| Ralstonia sp. UNC404CL21Col | 0.44 | ABZR87_RS10090 | | RluA family pseudouridine synthase | 0.39 | ABZR87_RS02375 | | cytochrome c1 | 0.47 | 65 |
| Ralstonia solanacearum PSI07 | 0.44 | RPSI07_RS19085 | | RluA family pseudouridine synthase | 0.39 | RPSI07_RS10515 | | cytochrome c | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.44 | RS_RS05155 | | RluA family pseudouridine synthase | 0.40 | RS_RS14665 | | cytochrome c | low | > 80 |
| Ralstonia solanacearum UW163 | 0.43 | UW163_RS11840 | | RluA family pseudouridine synthase | 0.40 | UW163_RS06895 | | cytochrome c | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.43 | RALBFv3_RS14375 | | RluA family pseudouridine synthase | 0.40 | RALBFv3_RS06720 | | cytochrome c | low | > 76 |
| Burkholderia phytofirmans PsJN | 0.43 | BPHYT_RS14480 | | ribosomal large subunit pseudouridine synthase C | 0.36 | BPHYT_RS17620 | | cytochrome C | low | > 109 |
| Dyella japonica UNC79MFTsu3.2 | 0.43 | ABZR86_RS02725 | | RluA family pseudouridine synthase | 0.37 | ABZR86_RS09870 | | cytochrome c1 | low | > 74 |
| Variovorax sp. SCN45 | 0.43 | GFF3847 | | LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) | 0.31 | GFF6696 | | Ubiquinol-cytochrome C reductase, cytochrome C1 subunit | low | > 127 |
| Variovorax sp. OAS795 | 0.43 | ABID97_RS08250 | | RluA family pseudouridine synthase | 0.29 | ABID97_RS22975 | | cytochrome c1 | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.42 | Ac3H11_1590 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.32 | Ac3H11_4752 | | ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.41 | GFF121 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.35 | GFF1293 | | ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit | low | > 90 |
| Castellaniella sp019104865 MT123 | 0.40 | ABCV34_RS08415 | | RluA family pseudouridine synthase | 0.33 | ABCV34_RS12625 | | cytochrome c1 | — | — |
| Azospirillum sp. SherDot2 | 0.25 | MPMX19_01718 | | Ribosomal large subunit pseudouridine synthase C | 0.13 | MPMX19_05014 | | Cytochrome c1 | low | > 112 |
Not shown: 42 genomes with orthologs for PP_1906 only; 1 genomes with orthologs for PP_1319 only