| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_3426 | | Multidrug efflux RND transporter MexF | 1.0 | PP_1232 | | conserved exported protein of unknown function | 0.20 | 17 |
| Pseudomonas fluorescens SBW25 | 0.88 | PFLU_RS14260 | | efflux RND transporter permease subunit | 0.74 | PFLU_RS07250 | | M48 family metallopeptidase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.88 | PFLU_RS14260 | | efflux RND transporter permease subunit | 0.74 | PFLU_RS07250 | | M48 family metallopeptidase | low | > 109 |
| Pseudomonas simiae WCS417 | 0.88 | PS417_13190 | | transporter | 0.74 | PS417_07140 | | peptidase M48 | low | > 88 |
| Pseudomonas syringae pv. syringae B728a | 0.87 | Psyr_2968 | | Hydrophobe/amphiphile efflux-1 HAE1 | 0.81 | Psyr_1543 | | Peptidase M48, Ste24p | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.87 | Psyr_2968 | | Hydrophobe/amphiphile efflux-1 HAE1 | 0.81 | Psyr_1543 | | Peptidase M48, Ste24p | 0.40 | 32 |
| Pseudomonas fluorescens FW300-N2C3 | 0.87 | AO356_27605 | | transporter | 0.78 | AO356_04555 | | peptidase M48 | low | > 104 |
| Pseudomonas fluorescens GW456-L13 | 0.87 | PfGW456L13_3060 | | Multidrug efflux transporter MexF | 0.79 | PfGW456L13_4512 | | Exported zinc metalloprotease YfgC precursor | low | > 87 |
| Pseudomonas sp. RS175 | 0.87 | PFR28_01728 | | multidrug efflux RND transporter permease subunit OqxB27 | 0.77 | PFR28_00694 | | Beta-barrel assembly-enhancing protease | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.87 | AO353_23960 | | transporter | 0.73 | AO353_17645 | | peptidase M48 | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.87 | Pf1N1B4_4864 | | Multidrug efflux transporter MexF | 0.77 | Pf1N1B4_3327 | | Exported zinc metalloprotease YfgC precursor | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.86 | Pf6N2E2_824 | | Multidrug efflux transporter MexF | 0.79 | Pf6N2E2_2752 | | Exported zinc metalloprotease YfgC precursor | low | > 103 |
| Pseudomonas sp. S08-1 | 0.83 | OH686_01005 | | Multidrug efflux system, inner membrane proton/drug antiporter (RND type) | 0.72 | OH686_19195 | | Exported zinc metalloprotease YfgC precursor | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.83 | Psest_2144 | | The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family | 0.70 | Psest_1510 | | Putative Zn-dependent protease, contains TPR repeats | low | > 67 |
| Dyella japonica UNC79MFTsu3.2 | 0.71 | ABZR86_RS15400 | | efflux RND transporter permease subunit | 0.19 | ABZR86_RS00725 | | M48 family metalloprotease | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.69 | OKGIIK_14955 | oqxB | multidrug efflux RND transporter permease subunit | 0.18 | OKGIIK_03795 | | Putative beta-barrel assembly-enhancing protease | low | > 52 |
| Shewanella oneidensis MR-1 | 0.68 | SO3492 | mexF | RND multidrug efflux transporter MexF (NCBI ptt file) | 0.24 | SO2869 | | conserved hypothetical protein (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.68 | Shewana3_1078 | | hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) | 0.24 | Shewana3_1649 | | peptidase M48, Ste24p (RefSeq) | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.66 | MIT1002_02998 | | Efflux pump membrane transporter BepE | 0.24 | MIT1002_02211 | | TPR repeat-containing protein YfgC precursor | low | > 70 |
| Ralstonia sp. UNC404CL21Col | 0.65 | ABZR87_RS19400 | | efflux RND transporter permease subunit | 0.21 | ABZR87_RS08020 | | M48 family metalloprotease | low | > 80 |
| Variovorax sp. SCN45 | 0.64 | GFF429 | | RND efflux system, inner membrane transporter | 0.12 | GFF5421 | | Peptidase M48, Ste24p precursor | low | > 127 |
| Variovorax sp. OAS795 | 0.64 | ABID97_RS17350 | | efflux RND transporter permease subunit | 0.15 | ABID97_RS02095 | | M48 family metalloprotease | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.64 | Ac3H11_258 | | RND multidrug efflux transporter; Acriflavin resistance protein | 0.13 | Ac3H11_1239 | | Peptidase M48, Ste24p precursor | low | > 79 |
| Ralstonia solanacearum PSI07 | 0.63 | RPSI07_RS05175 | | multidrug efflux RND transporter permease subunit | 0.21 | RPSI07_RS21205 | | peptidase M48 | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.63 | RS_RS22490 | | multidrug efflux RND transporter permease subunit | 0.21 | RS_RS02810 | | peptidase M48 | low | > 80 |
| Ralstonia solanacearum UW163 | 0.63 | UW163_RS20755 | | multidrug efflux RND transporter permease subunit | 0.20 | UW163_RS01485 | | peptidase M48 | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.63 | RALBFv3_RS18375 | | multidrug efflux RND transporter permease subunit | 0.20 | RALBFv3_RS12125 | | peptidase M48 | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.62 | GFF4246 | | RND efflux system, inner membrane transporter CmeB | 0.26 | GFF2175 | | Exported zinc metalloprotease YfgC precursor | low | > 78 |
| Paraburkholderia sabiae LMG 24235 | 0.62 | QEN71_RS20105 | | efflux RND transporter permease subunit | 0.21 | QEN71_RS02380 | | M48 family metalloprotease | low | > 153 |
| Dechlorosoma suillum PS | 0.61 | Dsui_2026 | | hydrophobe/amphiphile efflux-1 (HAE1) family transporter | 0.22 | Dsui_0003 | | putative Zn-dependent protease | low | > 51 |
| Serratia liquefaciens MT49 | 0.61 | IAI46_13385 | | efflux RND transporter permease subunit | 0.25 | IAI46_18840 | | M48 family metallopeptidase | low | > 86 |
| Burkholderia phytofirmans PsJN | 0.60 | BPHYT_RS22515 | | multidrug efflux RND transporter permease subunit | 0.20 | BPHYT_RS16315 | | peptidase M48 Ste24p | low | > 109 |
| Herbaspirillum seropedicae SmR1 | 0.58 | HSERO_RS01560 | | transporter | 0.22 | HSERO_RS03305 | | peptidase M48 | low | > 78 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.58 | Xcc-8004.3477.1 | | RND efflux system, inner membrane transporter CmeB | 0.18 | Xcc-8004.4060.1 | | Exported zinc metalloprotease YfgC precursor | low | > 74 |
| Pantoea sp. MT58 | 0.57 | IAI47_10310 | | multidrug efflux RND transporter permease subunit OqxB | 0.24 | IAI47_05205 | | M48 family metallopeptidase | low | > 76 |
| Rahnella sp. WP5 | 0.56 | EX31_RS01495 | | multidrug efflux RND transporter permease subunit | 0.25 | EX31_RS22720 | | M48 family metallopeptidase | low | > 89 |
| Enterobacter asburiae PDN3 | 0.55 | EX28DRAFT_1472 | | The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family | 0.26 | EX28DRAFT_0178 | | Putative Zn-dependent protease, contains TPR repeats | 0.56 | 57 |
| Enterobacter sp. TBS_079 | 0.55 | MPMX20_01155 | | multidrug efflux RND transporter permease subunit OqxB3 | 0.25 | MPMX20_03344 | | Beta-barrel assembly-enhancing protease | low | > 85 |
| Klebsiella michiganensis M5al | 0.55 | BWI76_RS12955 | | multidrug efflux RND transporter permease subunit OqxB | 0.24 | BWI76_RS20925 | | peptidase M48 | 0.30 | 35 |
| Lysobacter sp. OAE881 | 0.53 | ABIE51_RS01060 | | multidrug efflux RND transporter permease subunit | 0.20 | ABIE51_RS14215 | | M48 family metalloprotease | low | > 62 |
| Desulfovibrio vulgaris Miyazaki F | 0.46 | DvMF_2163 | | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (RefSeq) | 0.14 | DvMF_0483 | | peptidase M48 Ste24p (RefSeq) | low | > 51 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.46 | DVU0061 | | multidrug resistance protein, putative (TIGR) | 0.15 | DVU1578 | | TPR domain protein (TIGR) | low | > 55 |
| Shewanella loihica PV-4 | 0.44 | Shew_1164 | | hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) | 0.26 | Shew_1841 | | peptidase M48, Ste24p (RefSeq) | low | > 60 |
| Marinobacter adhaerens HP15 | 0.41 | HP15_933 | | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family | 0.28 | HP15_2031 | | putative Zn-dependent protease, contains TPR repeats | low | > 73 |
Not shown: 25 genomes with orthologs for PP_3426 only; 25 genomes with orthologs for PP_1232 only