Conservation of cofitness between PP_2214 and PP_0951 in Pseudomonas putida KT2440

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2214 3-hydroxyacyl-CoA dehydrogenase type-2 1.0 PP_0951 Ribosome hibernation promoting factor 0.31 10
Pseudomonas fluorescens SBW25-INTG 0.80 PFLU_RS14760 SDR family NAD(P)-dependent oxidoreductase 0.70 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Pseudomonas fluorescens SBW25 0.80 PFLU_RS14760 SDR family NAD(P)-dependent oxidoreductase 0.70 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Pseudomonas sp. RS175 0.76 PFR28_01881 putative oxidoreductase 0.80 PFR28_00172 Ribosome hibernation promoting factor low > 88
Pseudomonas simiae WCS417 0.75 PS417_13860 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.83 PS417_04340 ribosome hibernation promoting factor HPF — —
Pseudomonas fluorescens GW456-L13 0.74 PfGW456L13_2981 Probable acyl-CoA dehydrogenase (EC 1.3.99.3) 0.81 PfGW456L13_5015 Ribosome hibernation protein YhbH low > 87
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_1144 Probable acyl-CoA dehydrogenase (EC 1.3.99.3) 0.81 Pf6N2E2_3268 Ribosome hibernation protein YhbH — —
Pseudomonas fluorescens FW300-N2E3 0.74 AO353_25690 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.80 AO353_05185 hypothetical protein — —
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_26345 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.81 AO356_07040 hypothetical protein 0.24 35
Pseudomonas fluorescens FW300-N1B4 0.72 Pf1N1B4_4785 Probable acyl-CoA dehydrogenase (EC 1.3.99.3) 0.81 Pf1N1B4_1081 Ribosome hibernation protein YhbH — —
Pseudomonas stutzeri RCH2 0.68 Psest_2447 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 0.66 Psest_3314 ribosomal subunit interface protein low > 67
Pseudomonas sp. S08-1 0.67 OH686_00865 3-hydroxyacyl-CoA dehydrogenase or 17hydroxysteroid dehydrogenase type 10 (HSD10)-like 0.78 OH686_08550 Ribosome hibernation promoting factor Hpf low > 80
Dechlorosoma suillum PS 0.66 Dsui_1624 dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein 0.52 Dsui_0703 ribosomal subunit interface protein low > 51
Paraburkholderia bryophila 376MFSha3.1 0.65 H281DRAFT_06131 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family 0.40 H281DRAFT_01928 sigma 54 modulation protein /SSU ribosomal protein S30P low > 103
Paraburkholderia graminis OAS925 0.64 ABIE53_005415 NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) 0.41 ABIE53_000717 putative sigma-54 modulation protein low > 113
Ralstonia sp. UNC404CL21Col 0.62 ABZR87_RS00745 3-hydroxyacyl-CoA dehydrogenase 0.41 ABZR87_RS07055 ribosome-associated translation inhibitor RaiA low > 80
Burkholderia phytofirmans PsJN 0.61 BPHYT_RS15890 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.41 BPHYT_RS02900 ribosome hibernation promoting factor low > 109
Ralstonia solanacearum GMI1000 0.61 RS_RS12705 3-hydroxyacyl-CoA dehydrogenase 0.43 RS_RS02015 ribosomal subunit interface protein low > 80
Ralstonia solanacearum IBSBF1503 0.61 RALBFv3_RS05095 3-hydroxyacyl-CoA dehydrogenase 0.43 RALBFv3_RS11165 ribosomal subunit interface protein low > 76
Ralstonia solanacearum UW163 0.61 UW163_RS08530 3-hydroxyacyl-CoA dehydrogenase 0.43 UW163_RS02415 ribosomal subunit interface protein — —
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS02810 3-hydroxyacyl-CoA dehydrogenase 0.39 QEN71_RS01750 ribosome-associated translation inhibitor RaiA low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF3825 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) @ 17hydroxysteroid dehydrogenase type 10 (HSD10)-like 0.46 GFF2612 Ribosome hibernation protein YhbH 0.53 31
Acidovorax sp. GW101-3H11 0.59 Ac3H11_2606 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) @ 17hydroxysteroid dehydrogenase type 10 (HSD10)-like 0.46 Ac3H11_681 Ribosome hibernation protein YhbH low > 79
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS03440 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.46 RR42_RS02080 ribosome hibernation promoting factor low > 128
Ralstonia solanacearum PSI07 0.58 RPSI07_RS12200 3-hydroxyacyl-CoA dehydrogenase 0.44 RPSI07_RS22135 ribosomal subunit interface protein low > 81
Variovorax sp. OAS795 0.58 ABID97_RS10560 3-hydroxyacyl-CoA dehydrogenase 0.45 ABID97_RS04490 ribosome-associated translation inhibitor RaiA low > 91
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS08630 SDR family NAD(P)-dependent oxidoreductase 0.39 ABZR86_RS19810 ribosome-associated translation inhibitor RaiA low > 74
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_09370 fabG 3-hydroxyacyl-CoA dehydrogenase 0.39 OKGIIK_02260 raiA ribosomal subunit interface protein low > 52
Acinetobacter radioresistens SK82 0.54 MPMX26_01177 putative oxidoreductase 0.29 MPMX26_02591 Ribosome hibernation promoting factor — —
Rhodanobacter denitrificans MT42 0.54 LRK55_RS02080 SDR family oxidoreductase 0.39 LRK55_RS12570 ribosome-associated translation inhibitor RaiA low > 63
Rhodanobacter denitrificans FW104-10B01 0.54 LRK54_RS02325 SDR family oxidoreductase 0.39 LRK54_RS12870 ribosome-associated translation inhibitor RaiA low > 59
Castellaniella sp019104865 MT123 0.54 ABCV34_RS05365 3-hydroxyacyl-CoA dehydrogenase 0.43 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA low > 48
Marinobacter adhaerens HP15 0.53 HP15_1007 3-hydroxyacyl-CoA dehydrogenase type II 0.62 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA low > 73
Lysobacter sp. OAE881 0.53 ABIE51_RS13215 SDR family NAD(P)-dependent oxidoreductase 0.41 ABIE51_RS15960 ribosome-associated translation inhibitor RaiA — —
Alteromonas macleodii MIT1002 0.51 MIT1002_01862 Levodione reductase 0.60 MIT1002_00826 Ribosome hibernation promoting factor low > 70
Variovorax sp. SCN45 0.49 GFF2281 Short-chain dehydrogenase/reductase SDR 0.45 GFF7293 Ribosome hibernation promoting factor Hpf 0.53 78
Xanthomonas campestris pv. campestris strain 8004 0.49 Xcc-8004.2924.1 Short-chain dehydrogenase/reductase SDR 0.38 Xcc-8004.1661.1 Ribosome hibernation protein YhbH low > 74
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_1000 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 0.59 B158DRAFT_2079 ribosomal subunit interface protein low > 40
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_4075 Short-chain dehydrogenase/reductase SDR 0.78 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_4075 Short-chain dehydrogenase/reductase SDR 0.78 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P low > 86
Shewanella loihica PV-4 0.29 Shew_1673 fabG 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) 0.63 Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) low > 60
Shewanella amazonensis SB2B 0.29 Sama_1381 fabG 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) 0.60 Sama_3089 ribosomal subunit interface protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.28 Shewana3_2765 fabG 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) 0.59 Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) — —
Shewanella oneidensis MR-1 0.27 SO1683 3-hydroxy-2-methylbutyryl-CoA dehydrogenase IvdG (EC:1.1.1.178) (from data) 0.58 SO3962 yfiA-3 ribosomal subunit interface protein (NCBI ptt file) low > 76

Not shown: 16 genomes with orthologs for PP_2214 only; 31 genomes with orthologs for PP_0951 only