| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_4726 | | Chaperone protein DnaJ | 1.0 | PP_0789 | | N-acetyl-anhydromuramyl-L-alanine-amidase | 0.59 | 1 |
| Pseudomonas fluorescens SBW25 | 0.85 | PFLU_RS25895 | | molecular chaperone DnaJ | 0.67 | PFLU_RS03980 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.85 | PFLU_RS25895 | | molecular chaperone DnaJ | 0.67 | PFLU_RS03980 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.85 | Psyr_4194 | | DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal | 0.67 | Psyr_0817 | | N-acetylmuramoyl-L-alanine amidase, family 2 | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.85 | Psyr_4194 | | DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal | 0.67 | Psyr_0817 | | N-acetylmuramoyl-L-alanine amidase, family 2 | low | > 86 |
| Pseudomonas simiae WCS417 | 0.84 | PS417_24055 | | molecular chaperone DnaJ | 0.66 | PS417_03935 | | N-acetyl-anhydromuranmyl-L-alanine amidase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.84 | AO353_05645 | | molecular chaperone DnaJ | 0.70 | AO353_05510 | | N-acetyl-anhydromuranmyl-L-alanine amidase | — | — |
| Pseudomonas sp. S08-1 | 0.84 | OH686_17065 | | chaperone protein DnaJ | 0.67 | OH686_16530 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase | 0.72 | 9 |
| Pseudomonas fluorescens FW300-N2E2 | 0.83 | Pf6N2E2_3367 | | Chaperone protein DnaJ | 0.70 | Pf6N2E2_3344 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | — | — |
| Pseudomonas sp. RS175 | 0.83 | PFR28_00074 | | Chaperone protein DnaJ | 0.71 | PFR28_00100 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.83 | Pf1N1B4_1175 | | Chaperone protein DnaJ | 0.68 | Pf1N1B4_1151 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.83 | AO356_07495 | | molecular chaperone DnaJ | 0.70 | AO356_07360 | | N-acetyl-anhydromuranmyl-L-alanine amidase | low | > 104 |
| Pseudomonas fluorescens GW456-L13 | 0.83 | PfGW456L13_5102 | | Chaperone protein DnaJ | 0.68 | PfGW456L13_5081 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | — | — |
| Pseudomonas stutzeri RCH2 | 0.81 | Psest_0965 | | chaperone protein DnaJ | 0.65 | Psest_0725 | | Negative regulator of beta-lactamase expression | — | — |
| Alteromonas macleodii MIT1002 | 0.69 | MIT1002_01458 | | Heat shock protein J | 0.53 | MIT1002_03006 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Shewanella oneidensis MR-1 | 0.67 | SO1127 | dnaJ | chaperone protein DnaJ (NCBI ptt file) | 0.49 | SO0421 | ampD | AmpD protein (NCBI ptt file) | — | — |
| Dickeya dianthicola ME23 | 0.67 | DZA65_RS19440 | | molecular chaperone DnaJ | 0.49 | DZA65_RS19020 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia coli ECRC101 | 0.67 | OKFHMN_11045 | dnaJ | molecular chaperone DnaJ | 0.50 | OKFHMN_10525 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia coli ECRC99 | 0.67 | KEDOAH_17110 | dnaJ | molecular chaperone DnaJ | 0.50 | KEDOAH_17630 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia coli ECOR38 | 0.67 | HEPCGN_09045 | dnaJ | molecular chaperone DnaJ | 0.50 | HEPCGN_08505 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia coli ECRC98 | 0.67 | JDDGAC_14640 | dnaJ | molecular chaperone DnaJ | 0.50 | JDDGAC_14120 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia fergusonii Becca | 0.67 | EFB2_04029 | | Chaperone protein DnaJ | 0.50 | EFB2_03939 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 86 |
| Escherichia coli ECRC101 | 0.67 | MCAODC_01560 | dnaJ | molecular chaperone DnaJ | 0.50 | MCAODC_01040 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia coli BW25113 | 0.67 | b0015 | dnaJ | chaperone Hsp40, co-chaperone with DnaK (NCBI) | 0.50 | b0110 | ampD | N-acetyl-anhydromuranmyl-L-alanine amidase (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.67 | OHPLBJKB_03646 | | Chaperone protein DnaJ | 0.50 | OHPLBJKB_03551 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia coli ECOR27 | 0.67 | NOLOHH_03375 | dnaJ | molecular chaperone DnaJ | 0.50 | NOLOHH_02870 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia coli ECRC102 | 0.67 | NIAGMN_08895 | dnaJ | molecular chaperone DnaJ | 0.50 | NIAGMN_08375 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia coli BL21 | 0.67 | ECD_00015 | | chaperone Hsp40, DnaK co-chaperone | 0.50 | ECD_00109 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; murein amidase | low | > 60 |
| Escherichia coli ECRC62 | 0.67 | BNILDI_08230 | dnaJ | molecular chaperone DnaJ | 0.50 | BNILDI_08740 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia coli Nissle 1917 | 0.67 | ECOLIN_RS00080 | | molecular chaperone DnaJ | 0.50 | ECOLIN_RS00590 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 52 |
| Shewanella sp. ANA-3 | 0.66 | Shewana3_0960 | | chaperone protein DnaJ (RefSeq) | 0.50 | Shewana3_0423 | | N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) | — | — |
| Klebsiella michiganensis M5al | 0.66 | BWI76_RS04305 | | molecular chaperone DnaJ | 0.51 | BWI76_RS04850 | | N-acetylmuramoyl-L-alanine amidase | low | > 92 |
| Dickeya dianthicola 67-19 | 0.66 | HGI48_RS18300 | | molecular chaperone DnaJ | 0.49 | HGI48_RS17875 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.66 | GFF1090 | | Chaperone protein DnaJ | 0.50 | GFF129 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | low | > 78 |
| Dickeya dadantii 3937 | 0.66 | DDA3937_RS18365 | | molecular chaperone DnaJ | 0.51 | DDA3937_RS17945 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Enterobacter asburiae PDN3 | 0.66 | EX28DRAFT_3627 | | chaperone protein DnaJ | 0.51 | EX28DRAFT_3703 | | N-acetylmuramoyl-L-alanine amidase | — | — |
| Enterobacter sp. TBS_079 | 0.66 | MPMX20_00721 | | Chaperone protein DnaJ | 0.51 | MPMX20_00801 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 85 |
| Shewanella loihica PV-4 | 0.66 | Shew_2843 | | chaperone protein DnaJ (RefSeq) | 0.49 | Shew_3434 | | N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) | — | — |
| Serratia liquefaciens MT49 | 0.66 | IAI46_03080 | | molecular chaperone DnaJ | 0.46 | IAI46_03535 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 86 |
| Pantoea sp. MT58 | 0.66 | IAI47_16170 | | molecular chaperone DnaJ | 0.50 | IAI47_15840 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Shewanella amazonensis SB2B | 0.66 | Sama_2510 | | chaperone protein DnaJ (RefSeq) | 0.53 | Sama_0372 | | N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) | — | — |
| Pectobacterium carotovorum WPP14 | 0.65 | HER17_RS02845 | | molecular chaperone DnaJ | 0.53 | HER17_RS03260 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Rahnella sp. WP5 | 0.63 | EX31_RS03895 | | molecular chaperone DnaJ | 0.48 | EX31_RS03510 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Kangiella aquimarina DSM 16071 | 0.63 | B158DRAFT_0609 | | chaperone protein DnaJ | 0.51 | B158DRAFT_2134 | | Negative regulator of beta-lactamase expression | low | > 40 |
| Dechlorosoma suillum PS | 0.63 | Dsui_3082 | | chaperone protein DnaJ | 0.46 | Dsui_0134 | | negative regulator of beta-lactamase expression | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.62 | CSW01_04415 | | molecular chaperone DnaJ | 0.49 | CSW01_12260 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.59 | QEN71_RS26490 | | molecular chaperone DnaJ | 0.44 | QEN71_RS27225 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Ralstonia solanacearum GMI1000 | 0.59 | RS_RS13200 | | molecular chaperone DnaJ | 0.49 | RS_RS14030 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.59 | H281DRAFT_04701 | | molecular chaperone DnaJ | 0.45 | H281DRAFT_06273 | | AmpD protein | — | — |
| Ralstonia solanacearum PSI07 | 0.59 | RPSI07_RS11965 | | molecular chaperone DnaJ | 0.49 | RPSI07_RS11160 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Burkholderia phytofirmans PsJN | 0.59 | BPHYT_RS03595 | | chaperone protein DnaJ | 0.45 | BPHYT_RS17065 | | N-acetyl-anhydromuranmyl-L-alanine amidase | — | — |
| Paraburkholderia graminis OAS925 | 0.58 | ABIE53_000865 | | molecular chaperone DnaJ | 0.45 | ABIE53_003579 | | AmpD protein | — | — |
| Variovorax sp. SCN45 | 0.58 | GFF2930 | | Chaperone protein DnaJ | 0.42 | GFF4433 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.58 | RALBFv3_RS05335 | | molecular chaperone DnaJ | 0.49 | RALBFv3_RS06080 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Ralstonia solanacearum UW163 | 0.58 | UW163_RS08290 | | molecular chaperone DnaJ | 0.49 | UW163_RS07545 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Acidovorax sp. GW101-3H11 | 0.57 | Ac3H11_1520 | | Chaperone protein DnaJ | 0.37 | Ac3H11_4020 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | — | — |
| Ralstonia sp. UNC404CL21Col | 0.57 | ABZR87_RS00970 | | molecular chaperone DnaJ | 0.46 | ABZR87_RS01745 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 80 |
| Herbaspirillum seropedicae SmR1 | 0.56 | HSERO_RS03080 | | molecular chaperone DnaJ | 0.48 | HSERO_RS01880 | | N-acetyl-anhydromuranmyl-L-alanine amidase | — | — |
| Castellaniella sp019104865 MT123 | 0.56 | ABCV34_RS07440 | | molecular chaperone DnaJ | 0.48 | ABCV34_RS09025 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.56 | GFF3769 | | Chaperone protein DnaJ | 0.43 | GFF594 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | — | — |
| Acinetobacter radioresistens SK82 | 0.55 | MPMX26_03008 | | Chaperone protein DnaJ | 0.49 | MPMX26_00043 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 36 |
Not shown: 41 genomes with orthologs for PP_4726 only; 0 genomes with orthologs for PP_0789 only