Conservation of cofitness between PP_1860 and PP_0547 in Pseudomonas putida KT2440

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1860 Organic hydroperoxide resistance transcriptional regulator 1.0 PP_0547 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.34 14
Pseudomonas fluorescens FW300-N2E3 0.80 AO353_19090 MarR family transcriptional regulator 0.89 AO353_06550 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 101
Pseudomonas fluorescens FW300-N1B4 0.76 Pf1N1B4_275 Organic hydroperoxide resistance transcriptional regulator 0.90 Pf1N1B4_2676 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) — —
Pseudomonas fluorescens FW300-N2C3 0.76 AO356_03145 MarR family transcriptional regulator 0.90 AO356_15235 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Pseudomonas fluorescens SBW25-INTG 0.76 PFLU_RS08445 MarR family transcriptional regulator 0.91 PFLU_RS26735 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 109
Pseudomonas fluorescens SBW25 0.76 PFLU_RS08445 MarR family transcriptional regulator 0.91 PFLU_RS26735 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 109
Pseudomonas fluorescens FW300-N2E2 0.76 Pf6N2E2_2458 Organic hydroperoxide resistance transcriptional regulator 0.90 Pf6N2E2_4982 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) — —
Pseudomonas sp. RS175 0.75 PFR28_00973 Organic hydroperoxide resistance transcriptional regulator 0.90 PFR28_03883 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase — —
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_2237 Organic hydroperoxide resistance transcriptional regulator 0.90 PfGW456L13_1344 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) low > 87
Pseudomonas simiae WCS417 0.73 PS417_08495 MarR family transcriptional regulator 0.91 PS417_24800 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_3626 transcriptional regulator, MarR family 0.87 Psyr_0630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 86
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_3626 transcriptional regulator, MarR family 0.87 Psyr_0630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 86
Pseudomonas sp. S08-1 0.68 OH686_17660 Organic hydroperoxide resistance transcriptional regulator 0.86 OH686_09400 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Acidovorax sp. GW101-3H11 0.53 Ac3H11_4655 Organic hydroperoxide resistance transcriptional regulator 0.47 Ac3H11_4032 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) low > 79
Marinobacter adhaerens HP15 0.52 HP15_2792 transcriptional regulator MarR family protein 0.61 HP15_616 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 73
Pectobacterium carotovorum WPP14 0.52 HER17_RS06400 MarR family transcriptional regulator 0.61 HER17_RS02615 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 75
Dickeya dianthicola ME23 0.51 DZA65_RS19880 MarR family transcriptional regulator 0.60 DZA65_RS19650 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 75
Dickeya dianthicola 67-19 0.51 HGI48_RS18745 MarR family transcriptional regulator 0.61 HGI48_RS18515 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 71
Dickeya dadantii 3937 0.50 DDA3937_RS18760 MarR family transcriptional regulator 0.61 DDA3937_RS18580 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 74
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS33655 MarR family transcriptional regulator 0.59 BPHYT_RS16990 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 109
Dechlorosoma suillum PS 0.50 Dsui_2172 transcriptional regulator 0.62 Dsui_0384 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 51
Enterobacter sp. TBS_079 0.50 MPMX20_00654 Organic hydroperoxide resistance transcriptional regulator 0.61 MPMX20_00515 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 85
Hydrogenophaga sp. GW460-11-11-14-LB1 0.49 GFF354 Organic hydroperoxide resistance transcriptional regulator 0.50 GFF583 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) — —
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_06031 transcriptional regulator, MarR family 0.59 H281DRAFT_06288 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 103
Ralstonia solanacearum PSI07 0.49 RPSI07_RS05140 MarR family transcriptional regulator 0.62 RPSI07_RS11275 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 81
Xanthomonas campestris pv. campestris strain 8004 0.49 Xcc-8004.339.1 Organic hydroperoxide resistance transcriptional regulator 0.52 Xcc-8004.1107.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) low > 74
Lysobacter sp. OAE881 0.49 ABIE51_RS14315 MarR family transcriptional regulator 0.50 ABIE51_RS17450 Mur ligase family protein low > 62
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS22585 MarR family transcriptional regulator 0.61 RR42_RS17675 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 128
Ralstonia solanacearum GMI1000 0.48 RS_RS22455 MarR family transcriptional regulator 0.62 RS_RS13915 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 80
Ralstonia solanacearum UW163 0.48 UW163_RS20715 MarR family transcriptional regulator 0.62 UW163_RS07655 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS18415 MarR family transcriptional regulator 0.62 RALBFv3_RS05970 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 76
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS17840 MarR family transcriptional regulator 0.60 QEN71_RS27145 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 153
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS15365 MarR family transcriptional regulator 0.61 HSERO_RS01965 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 78
Variovorax sp. OAS795 0.47 ABID97_RS00925 MarR family transcriptional regulator 0.54 ABID97_RS06355 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 91
Castellaniella sp019104865 MT123 0.47 ABCV34_RS12000 MarR family transcriptional regulator 0.56 ABCV34_RS10690 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 48
Erwinia tracheiphila SCR3 0.47 LU632_RS00235 MarR family transcriptional regulator 0.61 LU632_RS02135 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 74
Serratia liquefaciens MT49 0.47 IAI46_00420 MarR family transcriptional regulator 0.62 IAI46_01800 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 86
Rahnella sp. WP5 0.47 EX31_RS05595 MarR family transcriptional regulator 0.59 EX31_RS08665 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 89
Pantoea sp. MT58 0.46 IAI47_18675 MarR family transcriptional regulator 0.60 IAI47_02755 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 76
Variovorax sp. SCN45 0.46 GFF3570 Organic hydroperoxide resistance transcriptional regulator 0.55 GFF4445 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase (EC 6.3.2.-) low > 127
Enterobacter asburiae PDN3 0.46 EX28DRAFT_3564 Transcriptional regulators 0.61 EX28DRAFT_3420 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 76
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS03665 MarR family transcriptional regulator 0.62 ABZR87_RS01630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 80
Shewanella amazonensis SB2B 0.45 Sama_0628 MarR family transcriptional regulator (RefSeq) 0.65 Sama_0769 UDP-N-acetylmuramate (RefSeq) low > 62
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS15735 MarR family transcriptional regulator 0.55 LRK54_RS06610 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 59
Rhodanobacter denitrificans MT42 0.44 LRK55_RS15485 MarR family transcriptional regulator 0.55 LRK55_RS06355 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 63
Shewanella sp. ANA-3 0.43 Shewana3_3311 MarR family transcriptional regulator (RefSeq) 0.64 Shewana3_0791 UDP-N-acetylmuramate (RefSeq) low > 73
Pontibacter actiniarum KMM 6156, DSM 19842 0.42 CA264_06970 MarR family transcriptional regulator 0.18 CA264_11915 peptidoglycan synthetase low > 74
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_19135 MarR family transcriptional regulator 0.66 CSW01_12875 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 62
Alteromonas macleodii MIT1002 0.33 MIT1002_00888 Organic hydroperoxide resistance transcriptional regulator 0.66 MIT1002_00168 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 70

Not shown: 13 genomes with orthologs for PP_1860 only; 24 genomes with orthologs for PP_0547 only