| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_1906 | | ribosomal large subunit pseudouridine synthase C | 1.0 | PP_0397 | | protein kinase | 0.34 | 12 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.90 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | 0.98 | Psyr_4631 | | PrkA serine kinase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.90 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | 0.98 | Psyr_4631 | | PrkA serine kinase | low | > 86 |
| Pseudomonas sp. RS175 | 0.90 | PFR28_03018 | | Ribosomal large subunit pseudouridine synthase C | 0.96 | PFR28_04068 | | hypothetical protein | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.89 | Pf6N2E2_5944 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.96 | Pf6N2E2_4801 | | yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.89 | AO356_20125 | | 23S rRNA pseudouridylate synthase | 0.96 | AO356_14315 | | yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | 0.28 | 74 |
| Pseudomonas simiae WCS417 | 0.88 | PS417_21480 | | 23S rRNA pseudouridylate synthase | 0.95 | PS417_25830 | | serine/threonine protein kinase | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.88 | Pf1N1B4_459 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.96 | Pf1N1B4_2523 | | Serine protein kinase (prkA protein), P-loop containing | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.88 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.95 | PFLU_RS27485 | | PrkA family serine protein kinase | 0.30 | 21 |
| Pseudomonas fluorescens SBW25 | 0.88 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.95 | PFLU_RS27485 | | PrkA family serine protein kinase | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.87 | AO353_01405 | | 23S rRNA pseudouridylate synthase | 0.96 | AO353_07335 | | yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | low | > 101 |
| Pseudomonas stutzeri RCH2 | 0.87 | Psest_1680 | | pseudouridine synthase, RluA family | 0.96 | Psest_3672 | | Putative Ser protein kinase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.86 | PfGW456L13_2097 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.96 | PfGW456L13_1196 | | Serine protein kinase (prkA protein), P-loop containing | low | > 87 |
| Pseudomonas sp. S08-1 | 0.86 | OH686_22095 | | LSU rRNA pseudouridine(955/2504/2580) synthase | 0.95 | OH686_15020 | | Uncharacterized protein YeaG | low | > 80 |
| Pantoea sp. MT58 | 0.58 | IAI47_12105 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.80 | IAI47_08925 | | protein kinase YeaG | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.56 | HER17_RS08615 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.80 | HER17_RS11150 | | protein kinase YeaG | low | > 75 |
| Rahnella sp. WP5 | 0.56 | EX31_RS24400 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.79 | EX31_RS06260 | | protein kinase YeaG | low | > 89 |
| Erwinia tracheiphila SCR3 | 0.56 | LU632_RS14855 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.80 | LU632_RS13010 | yeaG | PrkA family serine protein kinase | low | > 74 |
| Enterobacter sp. TBS_079 | 0.56 | MPMX20_01766 | | Ribosomal large subunit pseudouridine synthase C | 0.80 | MPMX20_01840 | | hypothetical protein | low | > 85 |
| Escherichia coli BW25113 | 0.56 | b1086 | rluC | 23S rRNA pseudouridylate synthase (NCBI) | 0.80 | b1783 | yeaG | yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | low | > 76 |
| Escherichia fergusonii Becca | 0.56 | EFB2_02889 | | Ribosomal large subunit pseudouridine synthase C | 0.80 | EFB2_02211 | | hypothetical protein | low | > 86 |
| Escherichia coli ECRC62 | 0.56 | BNILDI_19305 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.80 | BNILDI_16025 | yeaG | protein kinase YeaG | — | — |
| Escherichia coli ECOR38 | 0.56 | HEPCGN_23865 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.80 | HEPCGN_05100 | yeaG | protein kinase YeaG | low | > 85 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.56 | OHPLBJKB_02580 | | Ribosomal large subunit pseudouridine synthase C | 0.80 | OHPLBJKB_01949 | | hypothetical protein | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.56 | MIT1002_01725 | | Ribosomal large subunit pseudouridine synthase C | 0.80 | MIT1002_01233 | | PrkA family serine protein kinase | low | > 70 |
| Escherichia coli ECOR27 | 0.56 | NOLOHH_21145 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.80 | NOLOHH_17240 | yeaG | protein kinase YeaG | low | > 57 |
| Escherichia coli BL21 | 0.56 | ECD_01082 | | 23S rRNA pseudouridine(955,2504,2580) synthase | 0.76 | ECD_01752 | | protein kinase, endogenous substrate unidentified; autokinase | low | > 60 |
| Escherichia coli Nissle 1917 | 0.55 | ECOLIN_RS06280 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.80 | ECOLIN_RS09940 | | protein kinase YeaG | — | — |
| Escherichia coli ECRC102 | 0.55 | NIAGMN_24215 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.80 | NIAGMN_01355 | yeaG | protein kinase YeaG | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.55 | GFF3366 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.80 | GFF3473 | | Serine protein kinase (prkA protein), P-loop containing | low | > 78 |
| Escherichia coli ECRC98 | 0.55 | JDDGAC_07275 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.80 | JDDGAC_01285 | yeaG | protein kinase YeaG | — | — |
| Escherichia coli ECRC99 | 0.55 | KEDOAH_24140 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.80 | KEDOAH_01400 | yeaG | protein kinase YeaG | — | — |
| Escherichia coli ECRC101 | 0.55 | OKFHMN_03615 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.80 | OKFHMN_26710 | yeaG | protein kinase YeaG | — | — |
| Escherichia coli ECRC101 | 0.55 | MCAODC_22975 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.80 | MCAODC_18700 | yeaG | protein kinase YeaG | — | — |
| Enterobacter asburiae PDN3 | 0.55 | EX28DRAFT_1844 | | pseudouridine synthase, RluA family | 0.80 | EX28DRAFT_1776 | | putative serine protein kinase, PrkA | low | > 76 |
| Shewanella loihica PV-4 | 0.55 | Shew_1594 | | RluA family pseudouridine synthase (RefSeq) | 0.80 | Shew_1833 | | putative serine protein kinase, PrkA (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.55 | Sama_1988 | | pseudouridylate synthase (RefSeq) | 0.82 | Sama_1921 | | yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | low | > 62 |
| Klebsiella michiganensis M5al | 0.55 | BWI76_RS11050 | | 23S rRNA pseudouridine(955/2504/2580) synthase | 0.80 | BWI76_RS11485 | | serine protein kinase PrkA | low | > 92 |
| Dickeya dadantii 3937 | 0.54 | DDA3937_RS13155 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.80 | DDA3937_RS10245 | | PrkA family serine protein kinase | low | > 74 |
| Serratia liquefaciens MT49 | 0.54 | IAI46_09755 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.80 | IAI46_14375 | | protein kinase YeaG | low | > 86 |
| Dickeya dianthicola ME23 | 0.53 | DZA65_RS13690 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.80 | DZA65_RS10730 | | PrkA family serine protein kinase | low | > 75 |
| Dickeya dianthicola 67-19 | 0.53 | HGI48_RS13220 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.80 | HGI48_RS10255 | | PrkA family serine protein kinase | low | > 71 |
| Shewanella sp. ANA-3 | 0.53 | Shewana3_2566 | | ribosomal large subunit pseudouridine synthase C (RefSeq) | 0.81 | Shewana3_1638 | | putative serine protein kinase, PrkA (RefSeq) | low | > 73 |
| Marinobacter adhaerens HP15 | 0.51 | HP15_2221 | | pseudouridine synthase, RluA family | 0.82 | HP15_2933 | | serine protein kinase, PrkA | low | > 73 |
| Vibrio cholerae E7946 ATCC 55056 | 0.51 | CSW01_10130 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.81 | CSW01_09380 | | PrkA family serine protein kinase | low | > 62 |
| Herbaspirillum seropedicae SmR1 | 0.46 | HSERO_RS09415 | | ribosomal large subunit pseudouridine synthase C | 0.79 | HSERO_RS21690 | | PrkA family serine protein kinase | low | > 78 |
| Paraburkholderia graminis OAS925 | 0.45 | ABIE53_003058 | | 23S rRNA pseudouridine955/2504/2580 synthase | 0.79 | ABIE53_002318 | | serine protein kinase | low | > 113 |
| Paraburkholderia sabiae LMG 24235 | 0.44 | QEN71_RS04500 | | RluA family pseudouridine synthase | 0.78 | QEN71_RS07375 | | PrkA family serine protein kinase | low | > 153 |
| Cupriavidus basilensis FW507-4G11 | 0.44 | RR42_RS14155 | | pseudouridine synthase | 0.80 | RR42_RS36485 | | serine/threonine protein kinase | low | > 128 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.44 | H281DRAFT_04340 | | 23S rRNA pseudouridine955/2504/2580 synthase | 0.80 | H281DRAFT_05232 | | putative serine protein kinase, PrkA | low | > 103 |
| Ralstonia sp. UNC404CL21Col | 0.44 | ABZR87_RS10090 | | RluA family pseudouridine synthase | 0.80 | ABZR87_RS14220 | | PrkA family serine protein kinase | low | > 80 |
| Burkholderia phytofirmans PsJN | 0.43 | BPHYT_RS14480 | | ribosomal large subunit pseudouridine synthase C | 0.80 | BPHYT_RS11190 | | PrkA family serine protein kinase | low | > 109 |
| Variovorax sp. SCN45 | 0.43 | GFF3847 | | LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) | 0.80 | GFF2932 | | Uncharacterized protein YeaG | 0.67 | 31 |
| Variovorax sp. OAS795 | 0.43 | ABID97_RS08250 | | RluA family pseudouridine synthase | 0.81 | ABID97_RS10270 | | PrkA family serine protein kinase | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.42 | Ac3H11_1590 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.80 | Ac3H11_1145 | | Serine protein kinase (prkA protein), P-loop containing | low | > 79 |
| Castellaniella sp019104865 MT123 | 0.40 | ABCV34_RS08415 | | RluA family pseudouridine synthase | 0.15 | ABCV34_RS05540 | | serine protein kinase | low | > 48 |
| Rhizobium sp. OAE497 | 0.30 | ABIE40_RS09915 | | RluA family pseudouridine synthase | 0.70 | ABIE40_RS12550 | | PrkA family serine protein kinase | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.28 | SMc01275 | | ribosomal large subunit pseudouridine synthase C protein | 0.68 | SMc01267 | | hypothetical protein | low | > 103 |
| Magnetospirillum magneticum AMB-1 | 0.26 | AMB_RS15620 | | RluA family pseudouridine synthase | 0.70 | AMB_RS10885 | | PrkA family serine protein kinase | low | > 64 |
| Phaeobacter inhibens DSM 17395 | 0.25 | PGA1_c01950 | | ribosomal large subunit pseudouridine synthase C | 0.68 | PGA1_c02470 | | putative serine-protein kinase, PrkA type | — | — |
| Azospirillum sp. SherDot2 | 0.25 | MPMX19_01718 | | Ribosomal large subunit pseudouridine synthase C | 0.71 | MPMX19_02157 | | hypothetical protein | low | > 112 |
Not shown: 24 genomes with orthologs for PP_1906 only; 2 genomes with orthologs for PP_0397 only