Conservation of cofitness between PP_1906 and PP_0396 in Pseudomonas putida KT2440

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1906 ribosomal large subunit pseudouridine synthase C 1.0 PP_0396 conserved protein of unknown function 0.33 14
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.89 Psyr_4632 Protein of unknown function DUF444 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.89 Psyr_4632 Protein of unknown function DUF444 low > 86
Pseudomonas sp. RS175 0.90 PFR28_03018 Ribosomal large subunit pseudouridine synthase C 0.89 PFR28_04069 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_20125 23S rRNA pseudouridylate synthase 0.89 AO356_14310 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) 0.26 95
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.89 Pf6N2E2_4800 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) low > 103
Pseudomonas simiae WCS417 0.88 PS417_21480 23S rRNA pseudouridylate synthase 0.89 PS417_25835 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N1B4 0.88 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.89 Pf1N1B4_2522 FIG002076: hypothetical protein — —
Pseudomonas fluorescens SBW25 0.88 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.89 PFLU_RS27490 YeaH/YhbH family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.89 PFLU_RS27490 YeaH/YhbH family protein 0.28 37
Pseudomonas fluorescens FW300-N2E3 0.87 AO353_01405 23S rRNA pseudouridylate synthase 0.89 AO353_07340 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 101
Pseudomonas stutzeri RCH2 0.87 Psest_1680 pseudouridine synthase, RluA family 0.86 Psest_3673 Uncharacterized conserved protein — —
Pseudomonas fluorescens GW456-L13 0.86 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.89 PfGW456L13_1195 FIG002076: hypothetical protein low > 87
Pseudomonas sp. S08-1 0.86 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase 0.87 OH686_15015 UPF0229 protein YeaH low > 80
Pantoea sp. MT58 0.58 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.56 IAI47_08920 YeaH/YhbH family protein low > 76
Pectobacterium carotovorum WPP14 0.56 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.57 HER17_RS11155 YeaH/YhbH family protein low > 75
Rahnella sp. WP5 0.56 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.56 EX31_RS06255 YeaH/YhbH family protein low > 89
Erwinia tracheiphila SCR3 0.56 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.55 LU632_RS13015 YeaH/YhbH family protein low > 74
Enterobacter sp. TBS_079 0.56 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C 0.57 MPMX20_01839 hypothetical protein low > 85
Escherichia fergusonii Becca 0.56 EFB2_02889 Ribosomal large subunit pseudouridine synthase C 0.56 EFB2_02210 hypothetical protein low > 86
Escherichia coli BL21 0.56 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase 0.56 ECD_01753 UPF0229 family protein — —
Escherichia coli ECOR38 0.56 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.56 HEPCGN_05095 yeaH UPF0229 protein YeaH low > 85
Alteromonas macleodii MIT1002 0.56 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C 0.59 MIT1002_01232 hypothetical protein low > 70
Escherichia coli ECOR27 0.56 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.56 NOLOHH_17235 yeaH UPF0229 protein YeaH — —
Escherichia coli ECRC62 0.56 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.56 BNILDI_16020 yeaH UPF0229 protein YeaH — —
Escherichia coli BW25113 0.56 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) 0.56 b1784 yeaH yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.56 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C 0.56 OHPLBJKB_01948 hypothetical protein low > 73
Escherichia coli Nissle 1917 0.55 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.56 ECOLIN_RS09945 YeaH/YhbH family protein low > 52
Escherichia coli ECRC101 0.55 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.56 OKFHMN_26705 yeaH UPF0229 protein YeaH — —
Escherichia coli ECRC102 0.55 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.56 NIAGMN_01360 yeaH UPF0229 protein YeaH — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.56 GFF3472 UPF0229 protein YeaH low > 78
Escherichia coli ECRC101 0.55 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.56 MCAODC_18705 yeaH UPF0229 protein YeaH — —
Escherichia coli ECRC98 0.55 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.56 JDDGAC_01280 yeaH UPF0229 protein YeaH — —
Escherichia coli ECRC99 0.55 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.56 KEDOAH_01405 yeaH UPF0229 protein YeaH — —
Shewanella loihica PV-4 0.55 Shew_1594 RluA family pseudouridine synthase (RefSeq) 0.55 Shew_1832 hypothetical protein (RefSeq) low > 60
Enterobacter asburiae PDN3 0.55 EX28DRAFT_1844 pseudouridine synthase, RluA family 0.57 EX28DRAFT_1777 Uncharacterized conserved protein low > 76
Shewanella amazonensis SB2B 0.55 Sama_1988 pseudouridylate synthase (RefSeq) 0.54 Sama_1922 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) low > 62
Klebsiella michiganensis M5al 0.55 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase 0.56 BWI76_RS11480 hypothetical protein low > 92
Dickeya dadantii 3937 0.54 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.54 DDA3937_RS10240 YeaH/YhbH family protein low > 74
Serratia liquefaciens MT49 0.54 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.56 IAI46_14380 YeaH/YhbH family protein low > 86
Dickeya dianthicola ME23 0.53 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.54 DZA65_RS10725 YeaH/YhbH family protein low > 75
Dickeya dianthicola 67-19 0.53 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.54 HGI48_RS10250 YeaH/YhbH family protein low > 71
Shewanella sp. ANA-3 0.53 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) 0.52 Shewana3_1637 hypothetical protein (RefSeq) low > 73
Marinobacter adhaerens HP15 0.51 HP15_2221 pseudouridine synthase, RluA family 0.65 HP15_2934 protein YeaH low > 73
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.57 CSW01_09385 hypothetical protein low > 62
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C 0.53 HSERO_RS21695 hypothetical protein low > 78
Paraburkholderia graminis OAS925 0.45 ABIE53_003058 23S rRNA pseudouridine955/2504/2580 synthase 0.56 ABIE53_002317 uncharacterized sporulation protein YeaH/YhbH (DUF444 family) low > 113
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS04500 RluA family pseudouridine synthase 0.54 QEN71_RS07380 YeaH/YhbH family protein low > 153
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS14155 pseudouridine synthase 0.52 RR42_RS36480 hypothetical protein low > 128
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_04340 23S rRNA pseudouridine955/2504/2580 synthase 0.56 H281DRAFT_05233 hypothetical protein low > 103
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS10090 RluA family pseudouridine synthase 0.50 ABZR87_RS14215 YeaH/YhbH family protein low > 80
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C 0.54 BPHYT_RS11185 hypothetical protein low > 109
Variovorax sp. SCN45 0.43 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) 0.46 GFF2934 FIG002076: hypothetical protein 0.65 41
Variovorax sp. OAS795 0.43 ABID97_RS08250 RluA family pseudouridine synthase 0.45 ABID97_RS10265 YeaH/YhbH family protein low > 91
Acidovorax sp. GW101-3H11 0.42 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.49 Ac3H11_1146 FIG002076: hypothetical protein low > 79
Rhizobium sp. OAE497 0.30 ABIE40_RS09915 RluA family pseudouridine synthase 0.38 ABIE40_RS12545 YeaH/YhbH family protein low > 107
Sinorhizobium meliloti 1021 0.28 SMc01275 ribosomal large subunit pseudouridine synthase C protein 0.40 SMc01266 hypothetical protein low > 103
Magnetospirillum magneticum AMB-1 0.26 AMB_RS15620 RluA family pseudouridine synthase 0.43 AMB_RS10890 hypothetical protein low > 64
Phaeobacter inhibens DSM 17395 0.25 PGA1_c01950 ribosomal large subunit pseudouridine synthase C 0.41 PGA1_c02480 Uncharacterized conserved protein — —
Azospirillum sp. SherDot2 0.25 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C 0.42 MPMX19_02156 hypothetical protein low > 112
Azospirillum brasilense Sp245 0.22 AZOBR_RS06905 pseudouridine synthase 0.39 AZOBR_RS12650 hypothetical protein low > 97

Not shown: 24 genomes with orthologs for PP_1906 only; 2 genomes with orthologs for PP_0396 only