Conservation of cofitness between PP_0949 and PP_0396 in Pseudomonas putida KT2440

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0949 putative ATP-binding protein UPF0042 1.0 PP_0396 conserved protein of unknown function 0.45 3
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_5017 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.89 PfGW456L13_1195 FIG002076: hypothetical protein low > 87
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_07050 glmZ(sRNA)-inactivating NTPase 0.89 AO356_14310 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) low > 104
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_3270 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.89 Pf6N2E2_4800 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) low > 103
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_1083 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.89 Pf1N1B4_2522 FIG002076: hypothetical protein — —
Pseudomonas fluorescens FW300-N2E3 0.90 AO353_05195 glmZ(sRNA)-inactivating NTPase 0.89 AO353_07340 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) 0.38 38
Pseudomonas sp. RS175 0.90 PFR28_00170 RNase adapter protein RapZ 0.89 PFR28_04069 hypothetical protein 0.57 2
Pseudomonas simiae WCS417 0.89 PS417_04330 glmZ(sRNA)-inactivating NTPase 0.89 PS417_25835 hypothetical protein — —
Pseudomonas fluorescens SBW25 0.89 PFLU_RS04385 RNase adapter RapZ 0.89 PFLU_RS27490 YeaH/YhbH family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.89 PFLU_RS04385 RNase adapter RapZ 0.89 PFLU_RS27490 YeaH/YhbH family protein low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 0.89 Psyr_4632 Protein of unknown function DUF444 low > 86
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 0.89 Psyr_4632 Protein of unknown function DUF444 low > 86
Pseudomonas sp. S08-1 0.85 OH686_08560 RNase adapter protein RapZ 0.87 OH686_15015 UPF0229 protein YeaH low > 80
Pseudomonas stutzeri RCH2 0.84 Psest_3316 Predicted P-loop-containing kinase 0.86 Psest_3673 Uncharacterized conserved protein low > 67
Marinobacter adhaerens HP15 0.55 HP15_2445 protein yhbJ 0.65 HP15_2934 protein YeaH low > 73
Alteromonas macleodii MIT1002 0.48 MIT1002_00824 glmZ(sRNA)-inactivating NTPase 0.59 MIT1002_01232 hypothetical protein low > 70
Serratia liquefaciens MT49 0.48 IAI46_22485 RNase adapter RapZ 0.56 IAI46_14380 YeaH/YhbH family protein low > 86
Rahnella sp. WP5 0.47 EX31_RS12385 RNase adapter RapZ 0.56 EX31_RS06255 YeaH/YhbH family protein low > 89
Escherichia coli ECOR27 0.47 NOLOHH_09725 rapZ RNase adapter RapZ 0.56 NOLOHH_17235 yeaH UPF0229 protein YeaH — —
Escherichia coli BW25113 0.47 b3205 yhbJ hypothetical protein (NCBI) 0.56 b1784 yeaH yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 76
Escherichia coli ECRC101 0.47 MCAODC_08445 rapZ RNase adapter RapZ 0.56 MCAODC_18705 yeaH UPF0229 protein YeaH — —
Escherichia coli ECOR38 0.47 HEPCGN_16800 rapZ RNase adapter RapZ 0.56 HEPCGN_05095 yeaH UPF0229 protein YeaH low > 85
Escherichia coli ECRC98 0.47 JDDGAC_21550 rapZ RNase adapter RapZ 0.56 JDDGAC_01280 yeaH UPF0229 protein YeaH — —
Escherichia coli Nissle 1917 0.47 ECOLIN_RS18440 RNase adapter RapZ 0.56 ECOLIN_RS09945 YeaH/YhbH family protein low > 52
Escherichia coli HS(pFamp)R (ATCC 700891) 0.47 OHPLBJKB_00495 RNase adapter protein RapZ 0.56 OHPLBJKB_01948 hypothetical protein low > 73
Enterobacter asburiae PDN3 0.47 EX28DRAFT_3259 Predicted P-loop-containing kinase 0.57 EX28DRAFT_1777 Uncharacterized conserved protein low > 76
Escherichia coli ECRC101 0.47 OKFHMN_17925 rapZ RNase adapter RapZ 0.56 OKFHMN_26705 yeaH UPF0229 protein YeaH — —
Escherichia coli BL21 0.47 ECD_03070 adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase 0.56 ECD_01753 UPF0229 family protein — —
Escherichia coli ECRC62 0.47 BNILDI_01810 rapZ RNase adapter RapZ 0.56 BNILDI_16020 yeaH UPF0229 protein YeaH — —
Escherichia coli ECRC102 0.47 NIAGMN_15685 rapZ RNase adapter RapZ 0.56 NIAGMN_01360 yeaH UPF0229 protein YeaH — —
Escherichia fergusonii Becca 0.47 EFB2_00618 RNase adapter protein RapZ 0.56 EFB2_02210 hypothetical protein low > 86
Escherichia coli ECRC99 0.47 KEDOAH_10225 rapZ RNase adapter RapZ 0.56 KEDOAH_01405 yeaH UPF0229 protein YeaH — —
Pectobacterium carotovorum WPP14 0.47 HER17_RS20075 RNase adapter RapZ 0.57 HER17_RS11155 YeaH/YhbH family protein low > 75
Klebsiella michiganensis M5al 0.47 BWI76_RS25280 RNase adaptor protein RapZ 0.56 BWI76_RS11480 hypothetical protein low > 92
Enterobacter sp. TBS_079 0.47 MPMX20_04111 RNase adapter protein RapZ 0.57 MPMX20_01839 hypothetical protein low > 85
Erwinia tracheiphila SCR3 0.47 LU632_RS21295 rapZ RNase adapter RapZ 0.55 LU632_RS13015 YeaH/YhbH family protein low > 74
Dickeya dianthicola ME23 0.47 DZA65_RS01495 RNase adapter RapZ 0.54 DZA65_RS10725 YeaH/YhbH family protein low > 75
Dickeya dianthicola 67-19 0.47 HGI48_RS01430 RNase adapter RapZ 0.54 HGI48_RS10250 YeaH/YhbH family protein low > 71
Dickeya dadantii 3937 0.47 DDA3937_RS01515 RNase adapter RapZ 0.54 DDA3937_RS10240 YeaH/YhbH family protein low > 74
Pantoea sp. MT58 0.47 IAI47_17200 RNase adapter RapZ 0.56 IAI47_08920 YeaH/YhbH family protein low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF2949 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.56 GFF3472 UPF0229 protein YeaH low > 78
Shewanella loihica PV-4 0.47 Shew_3314 hypothetical protein (RefSeq) 0.55 Shew_1832 hypothetical protein (RefSeq) — —
Shewanella amazonensis SB2B 0.46 Sama_3091 hypothetical protein (RefSeq) 0.54 Sama_1922 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) low > 62
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS02885 glmZ(sRNA)-inactivating NTPase 0.54 BPHYT_RS11185 hypothetical protein low > 109
Vibrio cholerae E7946 ATCC 55056 0.46 CSW01_12830 RNase adaptor protein RapZ 0.57 CSW01_09385 hypothetical protein low > 62
Shewanella sp. ANA-3 0.46 Shewana3_0669 hypothetical protein (RefSeq) 0.52 Shewana3_1637 hypothetical protein (RefSeq) 0.37 40
Shewanella oneidensis MR-1 0.46 SO3964 conserved hypothetical protein (NCBI ptt file) 0.55 SO2883 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 76
Paraburkholderia sabiae LMG 24235 0.46 QEN71_RS01735 RNase adapter RapZ 0.54 QEN71_RS07380 YeaH/YhbH family protein low > 153
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_01931 UPF0042 nucleotide-binding protein 0.56 H281DRAFT_05233 hypothetical protein low > 103
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS07035 RNase adapter RapZ 0.50 ABZR87_RS14215 YeaH/YhbH family protein low > 80
Paraburkholderia graminis OAS925 0.44 ABIE53_000714 UPF0042 nucleotide-binding protein 0.56 ABIE53_002317 uncharacterized sporulation protein YeaH/YhbH (DUF444 family) 0.48 86
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS02060 nucleotide-binding protein 0.52 RR42_RS36480 hypothetical protein low > 128
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS19535 nucleotide-binding protein 0.53 HSERO_RS21695 hypothetical protein low > 78
Acidovorax sp. GW101-3H11 0.40 Ac3H11_3459 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.49 Ac3H11_1146 FIG002076: hypothetical protein low > 79
Variovorax sp. SCN45 0.39 GFF2356 RNase adapter protein RapZ 0.46 GFF2934 FIG002076: hypothetical protein low > 127
Variovorax sp. OAS795 0.39 ABID97_RS23710 RNase adapter RapZ 0.45 ABID97_RS10265 YeaH/YhbH family protein low > 91
Phaeobacter inhibens DSM 17395 0.35 PGA1_c01180 Predicted P-loop-containing kinase 0.41 PGA1_c02480 Uncharacterized conserved protein low > 62
Azospirillum sp. SherDot2 0.34 MPMX19_02622 Nucleotide-binding protein 0.42 MPMX19_02156 hypothetical protein low > 112
Magnetospirillum magneticum AMB-1 0.33 AMB_RS22235 RNase adaptor protein RapZ 0.43 AMB_RS10890 hypothetical protein low > 64
Azospirillum brasilense Sp245 0.33 AZOBR_RS30485 nucleotide-binding protein 0.39 AZOBR_RS12650 hypothetical protein low > 97

Not shown: 23 genomes with orthologs for PP_0949 only; 3 genomes with orthologs for PP_0396 only