Conservation of cofitness between PP_3378 and PP_0366 in Pseudomonas putida KT2440

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_3378 putative 2-ketogluconokinase 1.0 PP_0366 dethiobiotin synthetase 0.18 13
Pseudomonas simiae WCS417 0.68 PS417_12565 2-dehydro-3-deoxygluconokinase 0.76 PS417_25985 dethiobiotin synthetase low > 88
Pseudomonas fluorescens FW300-N1B4 0.68 Pf1N1B4_4765 2-ketogluconate kinase (EC 2.7.1.13) 0.78 Pf1N1B4_2491 Dethiobiotin synthetase (EC 6.3.3.3) low > 87
Pseudomonas fluorescens SBW25-INTG 0.68 PFLU_RS13250 sugar kinase 0.77 PFLU_RS27630 dethiobiotin synthase low > 109
Pseudomonas fluorescens SBW25 0.68 PFLU_RS13250 sugar kinase 0.77 PFLU_RS27630 dethiobiotin synthase low > 109
Pseudomonas fluorescens FW300-N2E2 0.67 Pf6N2E2_629 2-ketogluconate kinase (EC 2.7.1.13) 0.77 Pf6N2E2_4764 Dethiobiotin synthetase (EC 6.3.3.3) low > 103
Pseudomonas fluorescens FW300-N2C3 0.66 AO356_24685 2-dehydro-3-deoxygluconokinase 0.77 AO356_14155 dethiobiotin synthetase low > 104
Pseudomonas sp. RS175 0.66 PFR28_01598 2-dehydro-3-deoxygluconokinase 0.77 PFR28_04099 ATP-dependent dethiobiotin synthetase BioD 1 — —
Pseudomonas fluorescens GW456-L13 0.65 PfGW456L13_2950 2-ketogluconate kinase (EC 2.7.1.13) 0.79 PfGW456L13_1151 Dethiobiotin synthetase (EC 6.3.3.3) low > 87
Pseudomonas fluorescens FW300-N2E3 0.63 AO353_26875 2-dehydro-3-deoxygluconokinase 0.77 AO353_07505 dethiobiotin synthetase low > 101
Paraburkholderia bryophila 376MFSha3.1 0.60 H281DRAFT_05211 2-dehydro-3-deoxygluconokinase 0.34 H281DRAFT_02096 dethiobiotin synthetase low > 103
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS11300 2-dehydro-3-deoxygluconokinase 0.37 BPHYT_RS02155 dithiobiotin synthetase — —
Paraburkholderia sabiae LMG 24235 0.57 QEN71_RS35755 sugar kinase 0.32 QEN71_RS01090 dethiobiotin synthase — —
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS09020 sugar kinase 0.33 ABZR87_RS12345 dethiobiotin synthase low > 80
Enterobacter asburiae PDN3 0.55 EX28DRAFT_3815 Sugar kinases, ribokinase family 0.46 EX28DRAFT_2213 dethiobiotin synthase low > 76
Enterobacter sp. TBS_079 0.55 MPMX20_00179 2-dehydro-3-deoxygluconokinase 0.45 MPMX20_01406 ATP-dependent dethiobiotin synthetase BioD 1 low > 85
Klebsiella michiganensis M5al 0.54 BWI76_RS26950 2-dehydro-3-deoxygluconokinase 0.44 BWI76_RS08775 dethiobiotin synthase low > 92
Herbaspirillum seropedicae SmR1 0.54 HSERO_RS07545 2-dehydro-3-deoxygluconokinase 0.37 HSERO_RS12255 dethiobiotin synthetase low > 78
Serratia liquefaciens MT49 0.54 IAI46_00095 sugar kinase 0.45 IAI46_06540 ATP-dependent dethiobiotin synthetase BioD low > 86
Cupriavidus basilensis FW507-4G11 0.53 RR42_RS09470 2-dehydro-3-deoxygluconokinase 0.28 RR42_RS00935 dethiobiotin synthetase — —
Variovorax sp. OAS795 0.53 ABID97_RS20030 sugar kinase 0.37 ABID97_RS16255 dethiobiotin synthase — —
Variovorax sp. SCN45 0.53 GFF2716 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) 0.36 GFF143 Dethiobiotin synthase BioD (EC 6.3.3.3) low > 127
Pantoea sp. MT58 0.52 IAI47_00120 sugar kinase 0.47 IAI47_13515 ATP-dependent dethiobiotin synthetase BioD low > 76
Castellaniella sp019104865 MT123 0.51 ABCV34_RS08620 sugar kinase 0.14 ABCV34_RS15285 dethiobiotin synthase low > 48
Dyella japonica UNC79MFTsu3.2 0.19 ABZR86_RS12620 sugar kinase 0.46 ABZR86_RS12700 dethiobiotin synthase 0.31 71
Acidovorax sp. GW101-3H11 0.18 Ac3H11_700 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) 0.35 Ac3H11_3829 Dethiobiotin synthetase (EC 6.3.3.3) low > 79
Erwinia tracheiphila SCR3 0.18 LU632_RS03295 aminoimidazole riboside kinase 0.43 LU632_RS09145 bioD dethiobiotin synthase — —
Escherichia coli ECOR27 0.17 NOLOHH_14150 cscK aminoimidazole riboside kinase 0.44 NOLOHH_22755 bioD dethiobiotin synthase low > 57
Escherichia coli ECRC62 0.17 BNILDI_13005 cscK aminoimidazole riboside kinase 0.43 BNILDI_21025 bioD dethiobiotin synthase — —
Escherichia coli ECRC102 0.17 NIAGMN_20245 cscK aminoimidazole riboside kinase 0.44 NIAGMN_04430 bioD dethiobiotin synthase — —
Escherichia coli ECOR38 0.17 HEPCGN_19180 aminoimidazole riboside kinase 0.43 HEPCGN_01655 bioD dethiobiotin synthase low > 85
Escherichia coli ECRC98 0.17 JDDGAC_26430 cscK aminoimidazole riboside kinase 0.44 JDDGAC_10020 bioD dethiobiotin synthase — —
Escherichia coli ECRC101 0.17 MCAODC_13000 cscK aminoimidazole riboside kinase 0.44 MCAODC_25600 bioD dethiobiotin synthase — —
Escherichia coli ECRC101 0.17 OKFHMN_22470 cscK aminoimidazole riboside kinase 0.44 OKFHMN_06385 bioD dethiobiotin synthase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.17 GFF178 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) 0.42 GFF3994 Dethiobiotin synthetase (EC 6.3.3.3) — —
Escherichia coli BL21 0.17 ECD_01741 putative kinase 0.44 ECD_00745 dethiobiotin synthetase — —
Dickeya dianthicola ME23 0.17 DZA65_RS11450 carbohydrate kinase 0.47 DZA65_RS08980 ATP-dependent dethiobiotin synthetase BioD low > 75
Escherichia coli Nissle 1917 0.17 ECOLIN_RS09885 sugar kinase 0.44 ECOLIN_RS04145 dethiobiotin synthase — —
Rahnella sp. WP5 0.17 EX31_RS00440 aminoimidazole riboside kinase 0.41 EX31_RS23710 ATP-dependent dethiobiotin synthetase BioD low > 89
Vibrio cholerae E7946 ATCC 55056 0.17 CSW01_17490 aminoimidazole riboside kinase 0.45 CSW01_05660 dethiobiotin synthase low > 62
Escherichia fergusonii Becca 0.17 EFB2_02222 putative sugar kinase YdjH 0.44 EFB2_03327 ATP-dependent dethiobiotin synthetase BioD 1 low > 86
Escherichia coli BW25113 0.16 b1772 b1772 putative kinase (VIMSS) 0.44 b0778 bioD dethiobiotin synthetase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.16 OHPLBJKB_01960 putative sugar kinase YdjH 0.44 OHPLBJKB_02935 ATP-dependent dethiobiotin synthetase BioD 1 low > 73
Ralstonia solanacearum IBSBF1503 0.16 RALBFv3_RS18190 sugar kinase 0.35 RALBFv3_RS00825 dethiobiotin synthase — —
Ralstonia solanacearum UW163 0.16 UW163_RS20940 sugar kinase 0.35 UW163_RS14160 dethiobiotin synthase — —
Ralstonia solanacearum GMI1000 0.16 RS_RS22845 sugar kinase 0.32 RS_RS07440 ATP-dependent dethiobiotin synthetase BioD — —
Pectobacterium carotovorum WPP14 0.16 HER17_RS19640 aminoimidazole riboside kinase 0.44 HER17_RS13445 dethiobiotin synthase low > 75
Ralstonia solanacearum PSI07 0.16 RPSI07_RS05445 sugar kinase 0.33 RPSI07_RS16695 dethiobiotin synthase low > 81
Dickeya dianthicola 67-19 0.15 HGI48_RS01780 aminoimidazole riboside kinase 0.47 HGI48_RS08690 ATP-dependent dethiobiotin synthetase BioD low > 71
Escherichia coli ECRC99 0.15 KEDOAH_01345 rbsK sugar kinase 0.44 KEDOAH_21525 bioD dethiobiotin synthase — —
Dickeya dadantii 3937 0.15 DDA3937_RS01855 aminoimidazole riboside kinase 0.45 DDA3937_RS08525 ATP-dependent dethiobiotin synthetase BioD low > 74
Rhizobium sp. OAE497 0.15 ABIE40_RS02140 carbohydrate kinase 0.15 ABIE40_RS21065 dethiobiotin synthase — —
Alteromonas macleodii MIT1002 0.15 MIT1002_02434 2-dehydro-3-deoxygluconokinase 0.40 MIT1002_01382 ATP-dependent dethiobiotin synthetase BioD 1 low > 70
Shewanella amazonensis SB2B 0.15 Sama_0561 Fructokinase (EC 2.7.1.4) (from data) 0.42 Sama_1441 bioD dithiobiotin synthetase (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.15 PGA1_c07240 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92) (from data) 0.13 PGA1_c09140 dethiobiotin synthetase BioD low > 62
Agrobacterium fabrum C58 0.14 Atu3166 fructokinase 0.14 Atu3999 dithiobiotin synthetase low > 89
Synechococcus elongatus PCC 7942 0.12 Synpcc7942_0116 cscK fructokinase 0.15 Synpcc7942_0030 bioD dethiobiotin synthase — —
Xanthomonas campestris pv. campestris strain 8004 0.10 Xcc-8004.157.1 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) 0.33 Xcc-8004.4530.1 Dethiobiotin synthetase (EC 6.3.3.3) low > 74
Rhodanobacter sp. FW510-T8 0.10 OKGIIK_01685 rbsK carbohydrate kinase 0.42 OKGIIK_16455 bioD dethiobiotin synthase low > 52
Rhodanobacter denitrificans FW104-10B01 0.09 LRK54_RS05060 carbohydrate kinase 0.41 LRK54_RS07180 dethiobiotin synthase low > 59
Rhodanobacter denitrificans MT42 0.09 LRK55_RS04840 carbohydrate kinase 0.41 LRK55_RS06915 dethiobiotin synthase low > 63

Not shown: 11 genomes with orthologs for PP_3378 only; 22 genomes with orthologs for PP_0366 only