Conservation of cofitness between PP_5155 and PP_0184 in Pseudomonas putida KT2440

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5155 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase 1.0 PP_0184 Argininosuccinate lyase 0.75 20
Pseudomonas fluorescens GW456-L13 0.94 PfGW456L13_943 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.94 PfGW456L13_854 Argininosuccinate lyase (EC 4.3.2.1) 0.70 57
Pseudomonas syringae pv. syringae B728a ΔmexB 0.94 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.94 Psyr_0065 argininosuccinate lyase — —
Pseudomonas syringae pv. syringae B728a 0.94 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.94 Psyr_0065 argininosuccinate lyase — —
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_08510 3-phosphoglycerate dehydrogenase 0.94 AO353_09000 argininosuccinate lyase 0.69 43
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_2272 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.94 Pf1N1B4_2183 Argininosuccinate lyase (EC 4.3.2.1) — —
Pseudomonas sp. S08-1 0.92 OH686_11280 D-3-phosphoglycerate dehydrogenase 0.91 OH686_13885 argininosuccinate lyase low > 80
Pseudomonas stutzeri RCH2 0.92 Psest_3873 Phosphoglycerate dehydrogenase and related dehydrogenases 0.92 Psest_3751 argininosuccinate lyase — —
Pseudomonas sp. RS175 0.91 PFR28_04842 D-3-phosphoglycerate dehydrogenase 0.96 PFR28_04367 Argininosuccinate lyase — —
Pseudomonas fluorescens SBW25 0.91 PFLU_RS28695 phosphoglycerate dehydrogenase 0.94 PFLU_RS29220 argininosuccinate lyase — —
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS28695 phosphoglycerate dehydrogenase 0.94 PFLU_RS29220 argininosuccinate lyase — —
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_10300 3-phosphoglycerate dehydrogenase 0.95 AO356_12780 argininosuccinate lyase 0.86 24
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_3932 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.95 Pf6N2E2_4429 Argininosuccinate lyase (EC 4.3.2.1) — —
Pseudomonas simiae WCS417 0.91 PS417_27040 3-phosphoglycerate dehydrogenase 0.95 PS417_27540 argininosuccinate lyase — —
Variovorax sp. OAS795 0.80 ABID97_RS07235 phosphoglycerate dehydrogenase 0.63 ABID97_RS08190 argininosuccinate lyase — —
Acidovorax sp. GW101-3H11 0.79 Ac3H11_4790 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.61 Ac3H11_1632 Argininosuccinate lyase (EC 4.3.2.1) — —
Marinobacter adhaerens HP15 0.77 HP15_2554 D-3-phosphoglycerate dehydrogenase-like protein 0.75 HP15_243 argininosuccinate lyase — —
Variovorax sp. SCN45 0.77 GFF2538 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.62 GFF3824 Argininosuccinate lyase (EC 4.3.2.1) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.75 GFF149 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.61 GFF736 Argininosuccinate lyase (EC 4.3.2.1) — —
Acinetobacter radioresistens SK82 0.71 MPMX26_02773 D-3-phosphoglycerate dehydrogenase 0.76 MPMX26_00185 Argininosuccinate lyase 0.85 32
Alteromonas macleodii MIT1002 0.69 MIT1002_02993 D-3-phosphoglycerate dehydrogenase 0.41 MIT1002_00467 Argininosuccinate lyase 0.89 19
Shewanella amazonensis SB2B 0.69 Sama_2949 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.42 Sama_0260 argininosuccinate lyase (RefSeq) 0.84 56
Shewanella oneidensis MR-1 0.68 SO0862 serA D-3-phosphoglycerate dehydrogenase (NCBI ptt file) 0.41 SO0279 argH argininosuccinate lyase (NCBI ptt file) 0.88 21
Shewanella loihica PV-4 0.68 Shew_3196 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.40 Shew_0206 argininosuccinate lyase (RefSeq) 0.98 22
Shewanella sp. ANA-3 0.68 Shewana3_3416 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.40 Shewana3_3901 argininosuccinate lyase (RefSeq) low > 73
Dyella japonica UNC79MFTsu3.2 0.66 ABZR86_RS09635 phosphoglycerate dehydrogenase 0.20 ABZR86_RS08695 arginosuccinate lyase (EC 4.3.2.1) (from data) 0.92 33
Klebsiella michiganensis M5al 0.66 BWI76_RS23920 D-3-phosphoglycerate dehydrogenase 0.44 BWI76_RS00855 argininosuccinate lyase 0.84 4
Escherichia coli Nissle 1917 0.66 ECOLIN_RS16210 phosphoglycerate dehydrogenase 0.45 ECOLIN_RS22855 argininosuccinate lyase low > 52
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_00803 D-3-phosphoglycerate dehydrogenase 0.45 OHPLBJKB_04090 Argininosuccinate lyase low > 73
Escherichia coli ECOR27 0.66 NOLOHH_11370 serA phosphoglycerate dehydrogenase 0.45 NOLOHH_05720 argH argininosuccinate lyase low > 57
Escherichia coli ECRC101 0.66 MCAODC_09980 serA phosphoglycerate dehydrogenase 0.45 MCAODC_04075 argH argininosuccinate lyase — —
Escherichia coli ECRC62 0.66 BNILDI_09905 serA phosphoglycerate dehydrogenase 0.45 BNILDI_05805 argH argininosuccinate lyase — —
Escherichia coli ECRC101 0.66 OKFHMN_19460 serA phosphoglycerate dehydrogenase 0.45 OKFHMN_13575 argH argininosuccinate lyase — —
Escherichia coli ECRC102 0.66 NIAGMN_17225 serA phosphoglycerate dehydrogenase 0.44 NIAGMN_11325 argH argininosuccinate lyase — —
Escherichia coli BW25113 0.66 b2913 serA D-3-phosphoglycerate dehydrogenase (NCBI) 0.45 b3960 argH argininosuccinate lyase (NCBI) 0.92 5
Serratia liquefaciens MT49 0.66 IAI46_20900 phosphoglycerate dehydrogenase 0.45 IAI46_24500 argininosuccinate lyase 0.78 18
Escherichia coli ECRC98 0.66 JDDGAC_23100 serA phosphoglycerate dehydrogenase 0.45 JDDGAC_17200 argH argininosuccinate lyase — —
Escherichia coli ECRC99 0.66 KEDOAH_08680 serA phosphoglycerate dehydrogenase 0.45 KEDOAH_14585 argH argininosuccinate lyase — —
Escherichia fergusonii Becca 0.66 EFB2_00990 D-3-phosphoglycerate dehydrogenase 0.45 EFB2_04654 Argininosuccinate lyase low > 86
Escherichia coli BL21 0.66 ECD_02744 D-3-phosphoglycerate dehydrogenase 0.45 ECD_03845 argininosuccinate lyase 0.77 11
Escherichia coli ECOR38 0.66 HEPCGN_18760 serA phosphoglycerate dehydrogenase 0.45 HEPCGN_12220 argH argininosuccinate lyase low > 85
Enterobacter asburiae PDN3 0.66 EX28DRAFT_2965 Phosphoglycerate dehydrogenase and related dehydrogenases 0.44 EX28DRAFT_4422 argininosuccinate lyase — —
Erwinia tracheiphila SCR3 0.65 LU632_RS05855 serA phosphoglycerate dehydrogenase 0.45 LU632_RS19600 argH argininosuccinate lyase low > 74
Pantoea sp. MT58 0.65 IAI47_03725 phosphoglycerate dehydrogenase 0.44 IAI47_00920 argininosuccinate lyase 0.92 5
Enterobacter sp. TBS_079 0.65 MPMX20_03771 D-3-phosphoglycerate dehydrogenase 0.44 MPMX20_04520 Argininosuccinate lyase 0.89 16
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF3013 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.44 GFF2346 Argininosuccinate lyase (EC 4.3.2.1) low > 78
Rhodanobacter sp. FW510-T8 0.65 OKGIIK_10055 serA phosphoglycerate dehydrogenase 0.19 OKGIIK_09430 argH argininosuccinate lyase low > 52
Rahnella sp. WP5 0.65 EX31_RS21470 phosphoglycerate dehydrogenase 0.44 EX31_RS14180 argininosuccinate lyase 0.82 30
Dickeya dianthicola ME23 0.64 DZA65_RS19540 phosphoglycerate dehydrogenase 0.44 DZA65_RS00945 argininosuccinate lyase 0.68 24
Dickeya dadantii 3937 0.64 DDA3937_RS18480 phosphoglycerate dehydrogenase 0.44 DDA3937_RS20340 argininosuccinate lyase 0.74 52
Kangiella aquimarina DSM 16071 0.64 B158DRAFT_0518 Phosphoglycerate dehydrogenase and related dehydrogenases 0.20 B158DRAFT_1980 argininosuccinate lyase low > 40
Xanthomonas campestris pv. campestris strain 8004 0.64 Xcc-8004.2931.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.19 Xcc-8004.2323.1 Argininosuccinate lyase (EC 4.3.2.1) 0.77 35
Dickeya dianthicola 67-19 0.64 HGI48_RS18400 phosphoglycerate dehydrogenase 0.44 HGI48_RS00885 argininosuccinate lyase low > 71
Pectobacterium carotovorum WPP14 0.64 HER17_RS02725 phosphoglycerate dehydrogenase 0.44 HER17_RS20620 argininosuccinate lyase 0.78 63
Vibrio cholerae E7946 ATCC 55056 0.63 CSW01_12555 phosphoglycerate dehydrogenase 0.43 CSW01_13360 argininosuccinate lyase low > 62
Lysobacter sp. OAE881 0.62 ABIE51_RS13245 phosphoglycerate dehydrogenase 0.22 ABIE51_RS13380 argininosuccinate lyase 0.87 46
Azospirillum sp. SherDot2 0.60 MPMX19_00753 D-3-phosphoglycerate dehydrogenase 0.53 MPMX19_05817 Argininosuccinate lyase — —
Rhizobium sp. OAE497 0.59 ABIE40_RS30040 phosphoglycerate dehydrogenase 0.51 ABIE40_RS17520 argininosuccinate lyase — —
Azospirillum brasilense Sp245 0.59 AZOBR_RS10940 3-phosphoglycerate dehydrogenase 0.52 AZOBR_RS16935 argininosuccinate lyase — —
Rhodospirillum rubrum S1H 0.58 Rru_A2456 Phosphoglycerate dehydrogenase (NCBI) 0.53 Rru_A0397 Argininosuccinate lyase (NCBI) — —
Bosea sp. OAE506 0.55 ABIE41_RS08410 phosphoglycerate dehydrogenase 0.51 ABIE41_RS08750 argininosuccinate lyase — —
Castellaniella sp019104865 MT123 0.50 ABCV34_RS15150 phosphoglycerate dehydrogenase 0.61 ABCV34_RS03060 argininosuccinate lyase — —
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS27010 D-3-phosphoglycerate dehydrogenase 0.63 RR42_RS15925 argininosuccinate lyase — —
Bifidobacterium breve UCC2003 0.44 BBR_RS16970 phosphoglycerate dehydrogenase 0.36 BBR_RS13955 argininosuccinate lyase low > 34

Not shown: 2 genomes with orthologs for PP_5155 only; 37 genomes with orthologs for PP_0184 only