Conservation of cofitness between PFLU_RS04250 and PFLU_RS24775 in Pseudomonas fluorescens SBW25-INTG

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens SBW25-INTG 1.0 PFLU_RS04250 galactarate dehydratase 1.0 PFLU_RS24775 pyridoxal phosphate-dependent aminotransferase 0.11 18
Pseudomonas fluorescens SBW25 1.00 PFLU_RS04250 galactarate dehydratase 1.00 PFLU_RS24775 pyridoxal phosphate-dependent aminotransferase low > 109
Pseudomonas simiae WCS417 0.99 PS417_04210 Galactarate dehydratase (EC 4.2.1.42) (from data) 0.96 PS417_23120 aminotransferase low > 88
Pseudomonas fluorescens FW300-N1B4 0.97 Pf1N1B4_1107 D-galactarate dehydratase (EC 4.2.1.42) 0.90 Pf1N1B4_849 Aspartate aminotransferase (EC 2.6.1.1) low > 87
Pseudomonas fluorescens GW456-L13 0.96 PfGW456L13_5042 D-galactarate dehydratase (EC 4.2.1.42) 0.90 PfGW456L13_4856 Aspartate aminotransferase (EC 2.6.1.1) low > 87
Pseudomonas fluorescens FW300-N2E2 0.96 Pf6N2E2_3296 D-galactarate dehydratase (EC 4.2.1.42) 0.88 Pf6N2E2_3173 Aspartate aminotransferase (EC 2.6.1.1) low > 103
Pseudomonas sp. RS175 0.96 PFR28_00145 Galactarate dehydratase (L-threo-forming) 0.87 PFR28_00302 Methionine aminotransferase low > 88
Pseudomonas fluorescens FW300-N2C3 0.96 AO356_07170 galactarate dehydratase 0.88 AO356_06565 aminotransferase low > 104
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_05290 galactarate dehydratase 0.87 AO353_15915 aminotransferase low > 101
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_4225 galactarate dehydratase 0.85 Psyr_1253 2-keto-4-methylthiobutyrate aminotransferase apoenzyme low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_4225 galactarate dehydratase 0.85 Psyr_1253 2-keto-4-methylthiobutyrate aminotransferase apoenzyme low > 86
Pseudomonas stutzeri RCH2 0.83 Psest_0377 galactarate dehydratase 0.80 Psest_1268 Aspartate/tyrosine/aromatic aminotransferase low > 67
Pseudomonas putida KT2440 0.82 PP_3601 galactarate dehydratase 0.85 PP_0858 putative methionine/glutamine aminotransferase low > 96
Herbaspirillum seropedicae SmR1 0.68 HSERO_RS15800 Galactarate dehydratase (EC 4.2.1.42) (from data) 0.50 HSERO_RS15115 aminotransferase low > 78
Cupriavidus basilensis FW507-4G11 0.67 RR42_RS29090 galactarate dehydrogenase 0.52 RR42_RS05770 aminotransferase low > 128
Variovorax sp. SCN45 0.66 GFF2921 D-galactarate dehydratase (EC 4.2.1.42) 0.51 GFF245 Aspartate aminotransferase (EC 2.6.1.1) low > 127
Variovorax sp. OAS795 0.66 ABID97_RS10325 galactarate dehydratase 0.51 ABID97_RS16605 pyridoxal phosphate-dependent aminotransferase low > 91
Azospirillum sp. SherDot2 0.65 MPMX19_02889 Galactarate dehydratase (L-threo-forming) 0.36 MPMX19_04906 Methionine aminotransferase low > 112
Xanthomonas campestris pv. campestris strain 8004 0.65 Xcc-8004.1206.1 D-galactarate dehydratase (EC 4.2.1.42) 0.57 Xcc-8004.2348.1 hypothetical protein low > 74
Ralstonia solanacearum UW163 0.65 UW163_RS19445 galactarate dehydratase 0.52 UW163_RS10995 pyridoxal phosphate-dependent aminotransferase — —
Ralstonia solanacearum IBSBF1503 0.65 RALBFv3_RS19730 galactarate dehydratase 0.52 RALBFv3_RS02730 pyridoxal phosphate-dependent aminotransferase low > 76
Paraburkholderia bryophila 376MFSha3.1 0.65 H281DRAFT_05320 galactarate dehydratase 0.51 H281DRAFT_04597 2-keto-4-methylthiobutyrate aminotransferase apoenzyme low > 103
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS24160 D-galactarate dehydratase 0.51 BPHYT_RS06770 aminotransferase low > 109
Paraburkholderia graminis OAS925 0.64 ABIE53_006505 galactarate dehydratase 0.51 ABIE53_001620 methionine aminotransferase low > 113
Ralstonia solanacearum GMI1000 0.64 RS_RS21090 galactarate dehydratase 0.52 RS_RS10105 pyridoxal phosphate-dependent aminotransferase low > 80
Escherichia coli Nissle 1917 0.64 ECOLIN_RS17975 galactarate dehydratase 0.50 ECOLIN_RS03295 methionine-oxo-acid transaminase — —
Escherichia coli BW25113 0.64 b3128 garD (D)-galactarate dehydrogenase (NCBI) 0.51 b0600 ybdL putative aminotransferase (NCBI) low > 76
Escherichia coli ECRC100 0.64 OKFHMN_18355 garD galactarate dehydratase 0.51 OKFHMN_07535 ybdL methionine-oxo-acid transaminase low > 80
Escherichia fergusonii Becca 0.64 EFB2_00691 Galactarate dehydratase (L-threo-forming) 0.50 EFB2_03491 Methionine aminotransferase low > 86
Escherichia coli ECRC99 0.64 KEDOAH_09795 garD galactarate dehydratase 0.51 KEDOAH_20435 ybdL methionine-oxo-acid transaminase — —
Escherichia coli ECRC102 0.64 NIAGMN_16115 garD galactarate dehydratase 0.51 NIAGMN_05590 ybdL methionine-oxo-acid transaminase — —
Escherichia coli ECRC98 0.64 JDDGAC_21985 garD galactarate dehydratase 0.51 JDDGAC_11180 ybdL methionine-oxo-acid transaminase low > 86
Escherichia coli ECRC101 0.64 MCAODC_08865 garD galactarate dehydratase 0.51 MCAODC_26750 ybdL methionine-oxo-acid transaminase low > 87
Escherichia coli BL21 0.64 ECD_02993 D-galactarate dehydrogenase 0.51 ECD_00568 methionine aminotransferase, PLP-dependent low > 61
Escherichia coli ECOR38 0.64 HEPCGN_17190 garD galactarate dehydratase 0.51 HEPCGN_00745 ybdL methionine-oxo-acid transaminase low > 87
Escherichia coli ECRC62 0.64 BNILDI_01395 garD galactarate dehydratase 0.50 BNILDI_21920 ybdL methionine-oxo-acid transaminase low > 75
Escherichia coli ECOR27 0.64 NOLOHH_10135 garD galactarate dehydratase 0.51 NOLOHH_23910 ybdL methionine-oxo-acid transaminase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_00575 Galactarate dehydratase (L-threo-forming) 0.51 OHPLBJKB_03105 Methionine aminotransferase low > 73
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS33575 galactarate dehydratase 0.50 QEN71_RS24010 pyridoxal phosphate-dependent aminotransferase low > 153
Ralstonia solanacearum PSI07 0.64 RPSI07_RS03485 galactarate dehydratase 0.52 RPSI07_RS14585 pyridoxal phosphate-dependent aminotransferase low > 81
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.63 GFF1534 D-galactarate dehydratase (EC 4.2.1.42) 0.51 GFF4508 Aspartate aminotransferase (EC 2.6.1.1) low > 78
Ralstonia sp. UNC404CL21Col 0.63 ABZR87_RS20320 galactarate dehydratase 0.52 ABZR87_RS14645 pyridoxal phosphate-dependent aminotransferase low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.63 GFF1502 D-galactarate dehydratase (EC 4.2.1.42) 0.49 GFF4304 Aspartate aminotransferase (EC 2.6.1.1) low > 90
Enterobacter sp. TBS_079 0.63 MPMX20_04037 Galactarate dehydratase (L-threo-forming) 0.51 MPMX20_01269 Methionine aminotransferase low > 85
Klebsiella michiganensis M5al 0.63 BWI76_RS24840 galactarate dehydratase 0.51 BWI76_RS07920 methionine aminotransferase low > 92
Rahnella sp. WP5 0.63 EX31_RS07995 galactarate dehydratase 0.51 EX31_RS21065 pyridoxal phosphate-dependent aminotransferase low > 89
Enterobacter asburiae PDN3 0.62 EX28DRAFT_3184 galactarate dehydratase 0.52 EX28DRAFT_2353 Aspartate/tyrosine/aromatic aminotransferase low > 76
Acidovorax sp. GW101-3H11 0.62 Ac3H11_3953 D-galactarate dehydratase (EC 4.2.1.42) 0.50 Ac3H11_2404 Aspartate aminotransferase (EC 2.6.1.1) low > 79
Pectobacterium carotovorum WPP14 0.62 HER17_RS04070 galactarate dehydratase 0.52 HER17_RS04575 pyridoxal phosphate-dependent aminotransferase low > 75
Dickeya dadantii 3937 0.62 DDA3937_RS17065 galactarate dehydratase 0.50 DDA3937_RS16625 pyridoxal phosphate-dependent aminotransferase low > 74
Dickeya dianthicola 67-19 0.62 HGI48_RS17115 galactarate dehydratase 0.50 HGI48_RS16695 pyridoxal phosphate-dependent aminotransferase low > 71
Dickeya dianthicola ME23 0.62 DZA65_RS18190 galactarate dehydratase 0.50 DZA65_RS17785 pyridoxal phosphate-dependent aminotransferase low > 75
Pantoea sp. MT58 0.61 IAI47_04075 galactarate dehydratase 0.51 IAI47_15225 pyridoxal phosphate-dependent aminotransferase low > 76
Azospirillum brasilense Sp245 0.31 AZOBR_RS31430 galactarate dehydratase 0.35 AZOBR_RS20195 aminotransferase low > 97
Bosea sp. OAE506 0.31 ABIE41_RS14910 altronate dehydratase family protein 0.37 ABIE41_RS03840 aminotransferase 0.34 8
Castellaniella sp019104865 MT123 0.28 ABCV34_RS12030 altronate dehydratase family protein 0.40 ABCV34_RS11735 methionine aminotransferase low > 48
Caulobacter crescentus NA1000 0.21 CCNA_01555 altronate dehydratase 0.32 CCNA_00775 aspartate aminotransferase low > 66
Caulobacter crescentus NA1000 Δfur 0.21 CCNA_01555 altronate dehydratase 0.32 CCNA_00775 aspartate aminotransferase low > 67
Serratia liquefaciens MT49 0.21 IAI46_22215 altronate dehydratase 0.52 IAI46_04300 pyridoxal phosphate-dependent aminotransferase low > 86
Pedobacter sp. GW460-11-11-14-LB5 0.21 CA265_RS19875 Altronate dehydratase (EC 4.2.1.7) (from data) 0.46 CA265_RS08140 methionine aminotransferase low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.20 ABZR88_RS10490 UxaA family hydrolase 0.46 ABZR88_RS03400 methionine aminotransferase low > 71
Sphingomonas koreensis DSMZ 15582 0.18 Ga0059261_2974 Altronate dehydratase 0.30 Ga0059261_1558 Aspartate/tyrosine/aromatic aminotransferase low > 68

Not shown: 13 genomes with orthologs for PFLU_RS04250 only; 15 genomes with orthologs for PFLU_RS24775 only