Conservation of cofitness between NOLOHH_06700 and NOLOHH_21145 in Escherichia coli ECOR27

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECOR27 1.0 NOLOHH_06700 wecC UDP-N-acetyl-D-mannosamine dehydrogenase 1.0 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.81 18
Escherichia coli ECRC62 1.00 BNILDI_04825 wecC UDP-N-acetyl-D-mannosamine dehydrogenase 1.00 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Escherichia coli BL21 1.00 ECD_03665 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase 1.00 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase low > 61
Escherichia coli BW25113 1.00 b3787 rffD UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) 1.00 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04267 UDP-N-acetyl-D-mannosamine dehydrogenase 1.00 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C low > 73
Escherichia coli ECRC101 1.00 MCAODC_05070 wecC UDP-N-acetyl-D-mannosamine dehydrogenase 1.00 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 87
Escherichia coli ECRC100 1.00 OKFHMN_14565 wecC UDP-N-acetyl-D-mannosamine dehydrogenase 1.00 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 80
Escherichia coli ECRC98 1.00 JDDGAC_18190 wecC UDP-N-acetyl-D-mannosamine dehydrogenase 1.00 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Escherichia coli ECRC102 1.00 NIAGMN_12320 wecC UDP-N-acetyl-D-mannosamine dehydrogenase 1.00 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli ECRC99 1.00 KEDOAH_13585 wecC UDP-N-acetyl-D-mannosamine dehydrogenase 1.00 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli ECOR38 0.99 HEPCGN_13275 wecC UDP-N-acetyl-D-mannosamine dehydrogenase 1.00 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 87
Escherichia coli Nissle 1917 0.99 ECOLIN_RS21740 UDP-N-acetyl-D-mannosamine dehydrogenase 1.00 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 55
Escherichia fergusonii Becca 0.99 EFB2_04852 UDP-N-acetyl-D-mannosamine dehydrogenase 1.00 EFB2_02889 Ribosomal large subunit pseudouridine synthase C low > 86
Klebsiella michiganensis M5al 0.89 BWI76_RS01095 UDP-N-acetyl-D-mannosamine dehydrogenase 0.93 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase low > 92
Enterobacter asburiae PDN3 0.89 EX28DRAFT_4457 nucleotide sugar dehydrogenase 0.92 EX28DRAFT_1844 pseudouridine synthase, RluA family low > 76
Enterobacter sp. TBS_079 0.89 MPMX20_04486 UDP-N-acetyl-D-mannosamine dehydrogenase 0.89 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.87 GFF2886 UDP-glucose dehydrogenase (EC 1.1.1.22) 0.98 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 78
Serratia liquefaciens MT49 0.84 IAI46_00605 UDP-N-acetyl-D-mannosamine dehydrogenase 0.80 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Pectobacterium carotovorum WPP14 0.81 HER17_RS01160 UDP-N-acetyl-D-mannosamine dehydrogenase 0.81 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Rahnella sp. WP5 0.81 EX31_RS15070 UDP-N-acetyl-D-mannosamine dehydrogenase 0.82 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 89
Erwinia tracheiphila SCR3 0.77 LU632_RS24235 wecC UDP-N-acetyl-D-mannosamine dehydrogenase 0.85 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Pantoea sp. MT58 0.74 IAI47_18505 UDP-N-acetyl-D-mannosamine dehydrogenase 0.85 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 76
Pseudomonas fluorescens GW456-L13 0.72 PfGW456L13_3996 UDP-glucose dehydrogenase (EC 1.1.1.22) 0.51 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 87
Dickeya dadantii 3937 0.71 DDA3937_RS20050 UDP-N-acetyl-D-mannosamine dehydrogenase 0.80 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Dickeya dianthicola ME23 0.69 DZA65_RS21240 UDP-N-acetyl-D-mannosamine dehydrogenase 0.80 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Pseudomonas sp. RS175 0.69 PFR28_00917 UDP-N-acetyl-D-mannosamine dehydrogenase 0.55 PFR28_03018 Ribosomal large subunit pseudouridine synthase C low > 88
Dickeya dianthicola 67-19 0.68 HGI48_RS20195 UDP-N-acetyl-D-mannosamine dehydrogenase 0.80 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 71
Pseudomonas sp. S08-1 0.67 OH686_14390 UDP-N-acetyl-D-mannosamine dehydrogenase 0.54 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase low > 80
Ralstonia solanacearum IBSBF1503 0.66 RALBFv3_RS19095 UDP-N-acetyl-D-mannosamine dehydrogenase 0.47 RALBFv3_RS14375 RluA family pseudouridine synthase low > 76
Ralstonia solanacearum UW163 0.66 UW163_RS20035 UDP-N-acetyl-D-mannosamine dehydrogenase 0.47 UW163_RS11840 RluA family pseudouridine synthase — —
Ralstonia solanacearum GMI1000 0.65 RS_RS22025 UDP-N-acetyl-D-mannosamine dehydrogenase 0.46 RS_RS05155 RluA family pseudouridine synthase low > 80
Burkholderia phytofirmans PsJN 0.65 BPHYT_RS29845 UDP-N-acetyl-D-mannosamine dehydrogenase 0.46 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C — —
Ralstonia solanacearum PSI07 0.65 RPSI07_RS04505 UDP-N-acetyl-D-mannosamine dehydrogenase 0.46 RPSI07_RS19085 RluA family pseudouridine synthase low > 81
Kangiella aquimarina DSM 16071 0.65 B158DRAFT_2353 nucleotide sugar dehydrogenase 0.55 B158DRAFT_1770 ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) low > 40
Vibrio cholerae E7946 ATCC 55056 0.63 CSW01_04710 UDP-N-acetyl-D-mannosamine dehydrogenase 0.63 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 62
Paraburkholderia sabiae LMG 24235 0.63 QEN71_RS40735 UDP-N-acetyl-D-mannosamine dehydrogenase 0.49 QEN71_RS04500 RluA family pseudouridine synthase low > 153
Marinobacter adhaerens HP15 0.62 HP15_2381 UDP-glucose 6-dehydrogenase 0.51 HP15_2221 pseudouridine synthase, RluA family low > 73
Sinorhizobium meliloti 1021 0.25 SM_b21051 udpglucosegdpmannose dehydrogenase 0.26 SMc01275 ribosomal large subunit pseudouridine synthase C protein low > 103
Pseudomonas fluorescens FW300-N2C3 0.25 AO356_03420 UDP-N-acetyl-D-glucosamine dehydrogenase 0.55 AO356_20125 23S rRNA pseudouridylate synthase low > 104
Azospirillum brasilense Sp245 0.24 AZOBR_RS23650 UDP-N-acetyl-D-glucosamine dehydrogenase 0.23 AZOBR_RS06905 pseudouridine synthase low > 97
Agrobacterium fabrum C58 0.23 Atu2582 UDP-glucose/GDP-mannose dehydrogenase 0.26 Atu1471 ribosomal large subunit pseudouridine synthase C — —
Azospirillum sp. SherDot2 0.23 MPMX19_06712 UDP-N-acetyl-D-glucosamine 6-dehydrogenase 0.24 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C low > 112
Rhizobium sp. OAE497 0.23 ABIE40_RS19745 nucleotide sugar dehydrogenase 0.26 ABIE40_RS09915 RluA family pseudouridine synthase low > 107
Magnetospirillum magneticum AMB-1 0.20 AMB_RS00730 nucleotide sugar dehydrogenase 0.26 AMB_RS15620 RluA family pseudouridine synthase — —
Xanthomonas campestris pv. campestris strain 8004 0.20 Xcc-8004.2607.1 Polysaccharide biosynthetic protein 0.42 Xcc-8004.2616.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 74
Brevundimonas sp. GW460-12-10-14-LB2 0.20 A4249_RS02200 UDP-glucose/GDP-mannose dehydrogenase family protein 0.25 A4249_RS07865 RluA family pseudouridine synthase — —
Acinetobacter radioresistens SK82 0.19 MPMX26_00050 UDP-N-acetyl-D-glucosamine 6-dehydrogenase 0.43 MPMX26_00317 Ribosomal large subunit pseudouridine synthase C low > 36
Rhodospirillum rubrum S1H 0.19 Rru_A2116 UDP-glucose 6-dehydrogenase (NCBI) 0.26 Rru_A2659 Pseudouridine synthase, RluD (NCBI) — —
Pseudomonas fluorescens FW300-N2E2 0.19 Pf6N2E2_125 UDP-glucose dehydrogenase (EC 1.1.1.22) 0.55 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 103
Rhodanobacter sp. FW510-T8 0.19 OKGIIK_11915 wecC Vi polysaccharide biosynthesis protein VipA/TviB 0.45 OKGIIK_07405 rluA 23S rRNA pseudouridine(955/2504/2580) synthase low > 52
Rhodanobacter denitrificans FW104-10B01 0.19 LRK54_RS11970 nucleotide sugar dehydrogenase 0.45 LRK54_RS17895 RluA family pseudouridine synthase low > 59
Phaeobacter inhibens DSM 17395 0.19 PGA1_262p02300 UDP-glucose/GDP-mannose dehydrogenase 0.25 PGA1_c01950 ribosomal large subunit pseudouridine synthase C — —
Pseudomonas fluorescens FW300-N1B4 0.18 Pf1N1B4_5884 UDP-glucose dehydrogenase (EC 1.1.1.22) 0.52 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) — —
Rhodanobacter denitrificans MT42 0.18 LRK55_RS11695 nucleotide sugar dehydrogenase 0.45 LRK55_RS17750 RluA family pseudouridine synthase low > 63
Herbaspirillum seropedicae SmR1 0.18 HSERO_RS20970 NDP-N-acetyl-D-mannosaminuronate dehydrogenase 0.47 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C low > 78
Variovorax sp. OAS795 0.18 ABID97_RS02195 nucleotide sugar dehydrogenase 0.43 ABID97_RS08250 RluA family pseudouridine synthase low > 91
Dyella japonica UNC79MFTsu3.2 0.18 ABZR86_RS18500 Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB 0.42 ABZR86_RS02725 RluA family pseudouridine synthase low > 74
Paraburkholderia graminis OAS925 0.17 ABIE53_000508 UDP-N-acetyl-D-galactosamine dehydrogenase 0.46 ABIE53_003058 23S rRNA pseudouridine955/2504/2580 synthase low > 113
Lysobacter sp. OAE881 0.17 ABIE51_RS12425 nucleotide sugar dehydrogenase 0.43 ABIE51_RS11800 RluA family pseudouridine synthase low > 62
Shewanella amazonensis SB2B 0.16 Sama_2260 UDP-glucose/GDP-mannose dehydrogenase (RefSeq) 0.63 Sama_1988 pseudouridylate synthase (RefSeq) low > 62
Ralstonia sp. UNC404CL21Col 0.16 ABZR87_RS16430 nucleotide sugar dehydrogenase 0.46 ABZR87_RS10090 RluA family pseudouridine synthase low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.15 Psyr_2696 UDP-glucose 6-dehydrogenase 0.55 Psyr_1639 ribosomal large subunit pseudouridine synthase C low > 86
Pseudomonas syringae pv. syringae B728a 0.15 Psyr_2696 UDP-glucose 6-dehydrogenase 0.55 Psyr_1639 ribosomal large subunit pseudouridine synthase C low > 86

Not shown: 15 genomes with orthologs for NOLOHH_06700 only; 19 genomes with orthologs for NOLOHH_21145 only