Conservation of cofitness between JDDGAC_25110 and JDDGAC_27530 in Escherichia coli ECRC98

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECRC98 1.0 JDDGAC_25110 yfhL 4Fe-4S dicluster ferredoxin YfhL 1.0 JDDGAC_27530 yohK CidB/LrgB family autolysis modulator 0.67 6
Escherichia coli ECOR38 1.00 HEPCGN_20590 yfhL 4Fe-4S dicluster ferredoxin YfhL 1.00 HEPCGN_22840 yohK CidB/LrgB family autolysis modulator low > 87
Escherichia coli ECRC102 1.00 NIAGMN_19215 yfhL 4Fe-4S dicluster ferredoxin YfhL 1.00 NIAGMN_21340 yohK CidB/LrgB family autolysis modulator — —
Escherichia coli ECRC100 1.00 OKFHMN_21445 yfhL 4Fe-4S dicluster ferredoxin YfhL 1.00 OKFHMN_23575 yohK CidB/LrgB family autolysis modulator low > 80
Escherichia coli ECRC101 1.00 MCAODC_11975 yfhL 4Fe-4S dicluster ferredoxin YfhL 1.00 MCAODC_14625 yohK CidB/LrgB family autolysis modulator low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01145 Ferredoxin YfhL 1.00 OHPLBJKB_01569 Inner membrane protein YohK low > 73
Escherichia coli ECRC99 1.00 KEDOAH_06775 yfhL 4Fe-4S dicluster ferredoxin YfhL 1.00 KEDOAH_04610 yohK CidB/LrgB family autolysis modulator — —
Escherichia fergusonii Becca 0.99 EFB2_01334 Ferredoxin YfhL 1.00 EFB2_01714 Inner membrane protein YohK 0.46 82
Escherichia coli ECRC62 0.99 BNILDI_11920 yfhL 4Fe-4S dicluster ferredoxin YfhL 1.00 BNILDI_14065 yohK CidB/LrgB family autolysis modulator low > 75
Escherichia coli ECOR27 0.99 NOLOHH_13120 yfhL 4Fe-4S dicluster ferredoxin YfhL 1.00 NOLOHH_15145 yohK CidB/LrgB family autolysis modulator low > 75
Escherichia coli Nissle 1917 0.99 ECOLIN_RS14495 4Fe-4S dicluster ferredoxin YfhL 0.99 ECOLIN_RS12540 CidB/LrgB family autolysis modulator — —
Escherichia coli BL21 0.99 ECD_02456 putative 4Fe-4S cluster-containing protein 1.00 ECD_02071 LrgB family inner membrane protein low > 61
Escherichia coli BW25113 0.99 b2562 yfhL predicted 4Fe-4S cluster-containing protein (NCBI) 1.00 b2142 yohK predicted inner membrane protein (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF2470 4Fe-4S ferredoxin, iron-sulfur binding 0.92 GFF3796 LrgA-associated membrane protein LrgB low > 78
Enterobacter asburiae PDN3 0.95 EX28DRAFT_0084 4Fe-4S dicluster domain 0.91 EX28DRAFT_0413 TIGR00659 family protein low > 76
Enterobacter sp. TBS_079 0.93 MPMX20_03433 Ferredoxin YfhL 0.92 MPMX20_03114 Inner membrane protein YohK low > 85
Klebsiella michiganensis M5al 0.93 BWI76_RS21295 ferredoxin 0.91 BWI76_RS19605 CidB/LrgB family autolysis modulator — —
Serratia liquefaciens MT49 0.84 IAI46_19525 YfhL family 4Fe-4S dicluster ferredoxin 0.76 IAI46_07945 CidB/LrgB family autolysis modulator low > 86
Pectobacterium carotovorum WPP14 0.83 HER17_RS05840 YfhL family 4Fe-4S dicluster ferredoxin 0.80 HER17_RS13480 CidB/LrgB family autolysis modulator low > 75
Dickeya dianthicola 67-19 0.81 HGI48_RS15795 YfhL family 4Fe-4S dicluster ferredoxin 0.77 HGI48_RS08080 CidB/LrgB family autolysis modulator low > 71
Dickeya dadantii 3937 0.81 DDA3937_RS15710 YfhL family 4Fe-4S dicluster ferredoxin 0.77 DDA3937_RS07225 CidB/LrgB family autolysis modulator low > 74
Dickeya dianthicola ME23 0.80 DZA65_RS16875 YfhL family 4Fe-4S dicluster ferredoxin 0.77 DZA65_RS08675 CidB/LrgB family autolysis modulator low > 75
Rahnella sp. WP5 0.80 EX31_RS21860 YfhL family 4Fe-4S dicluster ferredoxin 0.82 EX31_RS11260 CidB/LrgB family autolysis modulator low > 89
Erwinia tracheiphila SCR3 0.78 LU632_RS15360 YfhL family 4Fe-4S dicluster ferredoxin 0.71 LU632_RS08560 CidB/LrgB family autolysis modulator — —
Pantoea sp. MT58 0.76 IAI47_04905 YfhL family 4Fe-4S dicluster ferredoxin 0.72 IAI47_06765 CidB/LrgB family autolysis modulator low > 76
Vibrio cholerae E7946 ATCC 55056 0.71 CSW01_03745 ferredoxin 0.47 CSW01_06230 LrgB family protein low > 62
Cupriavidus basilensis FW507-4G11 0.61 RR42_RS02000 ferredoxin 0.35 RR42_RS17325 membrane protein — —
Dechlorosoma suillum PS 0.60 Dsui_1029 hypothetical protein 0.35 Dsui_0028 putative effector of murein hydrolase — —
Ralstonia solanacearum PSI07 0.60 RPSI07_RS22220 4Fe-4S dicluster domain-containing protein 0.34 RPSI07_RS11790 LrgB family protein — —
Ralstonia solanacearum UW163 0.60 UW163_RS02500 4Fe-4S dicluster domain-containing protein 0.34 UW163_RS08115 LrgB family protein — —
Ralstonia solanacearum IBSBF1503 0.60 RALBFv3_RS11080 4Fe-4S dicluster domain-containing protein 0.34 RALBFv3_RS05510 LrgB family protein — —
Shewanella oneidensis MR-1 0.59 SO1251 ferredoxin, 4Fe-4S (NCBI ptt file) 0.21 SO1048 membrane protein, putative (NCBI ptt file) — —
Shewanella sp. ANA-3 0.58 Shewana3_1067 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) 0.21 Shewana3_0886 LrgB family protein (RefSeq) — —
Ralstonia sp. UNC404CL21Col 0.58 ABZR87_RS06970 YfhL family 4Fe-4S dicluster ferredoxin 0.33 ABZR87_RS01160 LrgB family protein low > 80
Shewanella amazonensis SB2B 0.58 Sama_1002 ferredoxin, 4Fe-4S (RefSeq) 0.18 Sama_2926 hypothetical protein (RefSeq) low > 62
Ralstonia solanacearum GMI1000 0.58 RS_RS01930 4Fe-4S dicluster domain-containing protein 0.33 RS_RS13370 LrgB family protein — —
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS01675 YfhL family 4Fe-4S dicluster ferredoxin 0.28 QEN71_RS28735 LrgB family protein low > 153
Pseudomonas syringae pv. syringae B728a 0.57 Psyr_4759 4Fe-4S ferredoxin, iron-sulfur binding protein 0.31 Psyr_0637 LrgB-like protein — —
Shewanella loihica PV-4 0.57 Shew_2785 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) 0.22 Shew_0830 LrgB family protein (RefSeq) low > 60
Pseudomonas syringae pv. syringae B728a ΔmexB 0.57 Psyr_4759 4Fe-4S ferredoxin, iron-sulfur binding protein 0.31 Psyr_0637 LrgB-like protein — —
Alteromonas macleodii MIT1002 0.57 MIT1002_02343 putative ferredoxin-like protein 0.26 MIT1002_00933 Inner membrane protein YohK low > 70
Herbaspirillum seropedicae SmR1 0.57 HSERO_RS20685 ferredoxin 0.36 HSERO_RS14495 membrane protein — —
Paraburkholderia graminis OAS925 0.56 ABIE53_000703 ferredoxin 0.39 ABIE53_005942 putative murein hydrolase (TIGR00659 family) low > 113
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_01943 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) 0.40 H281DRAFT_02851 TIGR00659 family protein — —
Acinetobacter radioresistens SK82 0.56 MPMX26_00739 Ferredoxin 0.22 MPMX26_01609 Holin-like protein CidB low > 36
Burkholderia phytofirmans PsJN 0.55 BPHYT_RS02825 ferredoxin 0.38 BPHYT_RS26565 membrane protein — —
Pseudomonas sp. S08-1 0.54 OH686_14145 Uncharacterized ferredoxin-like protein YfhL 0.30 OH686_09360 LrgA-associated membrane protein LrgB low > 80
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_13280 ferredoxin 0.30 AO356_15270 hypothetical protein — —
Pseudomonas sp. RS175 0.54 PFR28_04270 Ferredoxin 0.31 PFR28_03876 Inner membrane protein YohK — —
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_4571 4Fe-4S ferredoxin, iron-sulfur binding 0.30 Pf6N2E2_4989 LrgA-associated membrane protein LrgB — —
Pseudomonas putida KT2440 0.54 PP_5124 putative 4Fe-4S cluster-containing protein 0.30 PP_4815 putative Membrane protein — —
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS28510 YfhL family 4Fe-4S dicluster ferredoxin 0.29 PFLU_RS26700 LrgB family protein — —
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_2311 4Fe-4S ferredoxin, iron-sulfur binding 0.31 Pf1N1B4_2683 LrgA-associated membrane protein LrgB — —
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_980 4Fe-4S ferredoxin, iron-sulfur binding 0.31 PfGW456L13_1351 LrgA-associated membrane protein LrgB — —
Pseudomonas simiae WCS417 0.53 PS417_26865 ferredoxin 0.29 PS417_24765 membrane protein — —
Pseudomonas fluorescens SBW25 0.53 PFLU_RS28510 YfhL family 4Fe-4S dicluster ferredoxin 0.29 PFLU_RS26700 LrgB family protein low > 109
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_08310 ferredoxin 0.32 AO353_06515 hypothetical protein — —
Pseudomonas stutzeri RCH2 0.51 Psest_0243 hypothetical protein 0.31 Psest_0505 Putative effector of murein hydrolase low > 67
Variovorax sp. SCN45 0.51 GFF2345 Uncharacterized ferredoxin-like protein YfhL 0.34 GFF436 LrgA-associated membrane protein LrgB low > 127
Rhodopseudomonas palustris CGA009 0.47 TX73_003430 YfhL family 4Fe-4S dicluster ferredoxin 0.29 TX73_002825 LrgB family protein low > 86

Not shown: 12 genomes with orthologs for JDDGAC_25110 only; 16 genomes with orthologs for JDDGAC_27530 only