Conservation of cofitness between IAI47_08820 and IAI47_16345 in Pantoea sp. MT58

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pantoea sp. MT58 1.0 IAI47_08820 ATP-dependent DNA helicase 1.0 IAI47_16345 DNA repair protein RadA 0.21 4
Serratia liquefaciens MT49 0.81 IAI46_14550 ATP-dependent DNA helicase 0.91 IAI46_02945 DNA repair protein RadA low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.80 GFF2823 DinG family ATP-dependent helicase YoaA 0.93 GFF1057 DNA repair protein RadA low > 78
Escherichia coli BL21 0.80 ECD_01778 putative ATP-dependent helicase, DinG family 0.93 ECD_04265 DNA repair protein — —
Escherichia fergusonii Becca 0.80 EFB2_02192 putative ATP-dependent DNA helicase YoaA 0.93 EFB2_04057 DNA repair protein RadA low > 86
Escherichia coli ECOR38 0.80 HEPCGN_04970 yoaA putative ATP-dependent DNA helicase YoaA 0.92 HEPCGN_09195 radA DNA repair protein RadA low > 85
Escherichia coli Nissle 1917 0.80 ECOLIN_RS10055 ATP-dependent DNA helicase 0.93 ECOLIN_RS25190 DNA repair protein RadA — —
Escherichia coli ECRC99 0.80 KEDOAH_01530 yoaA putative ATP-dependent DNA helicase YoaA 0.93 KEDOAH_16960 radA DNA repair protein RadA — —
Escherichia coli ECOR27 0.80 NOLOHH_17100 yoaA putative ATP-dependent DNA helicase YoaA 0.93 NOLOHH_03520 radA DNA repair protein RadA low > 57
Escherichia coli ECRC98 0.80 JDDGAC_01155 yoaA putative ATP-dependent DNA helicase YoaA 0.93 JDDGAC_14790 radA DNA repair protein RadA — —
Escherichia coli ECRC101 0.80 OKFHMN_26580 yoaA putative ATP-dependent DNA helicase YoaA 0.93 OKFHMN_11195 radA DNA repair protein RadA — —
Escherichia coli ECRC62 0.80 BNILDI_15885 yoaA putative ATP-dependent DNA helicase YoaA 0.93 BNILDI_08075 radA DNA repair protein RadA — —
Escherichia coli ECRC102 0.80 NIAGMN_01485 yoaA putative ATP-dependent DNA helicase YoaA 0.93 NIAGMN_09045 radA DNA repair protein RadA — —
Escherichia coli ECRC101 0.80 MCAODC_18830 yoaA putative ATP-dependent DNA helicase YoaA 0.93 MCAODC_01710 radA DNA repair protein RadA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.80 OHPLBJKB_01925 putative ATP-dependent helicase DinG 0.93 OHPLBJKB_03672 DNA repair protein RadA low > 73
Escherichia coli BW25113 0.80 b1808 yoaA conserved protein with nucleoside triphosphate hydrolase domain (NCBI) 0.93 b4389 radA predicted repair protein (NCBI) 0.24 2
Dickeya dadantii 3937 0.79 DDA3937_RS11240 ATP-dependent DNA helicase 0.86 DDA3937_RS02420 DNA repair protein RadA low > 74
Dickeya dianthicola 67-19 0.79 HGI48_RS11275 ATP-dependent DNA helicase 0.86 HGI48_RS02380 DNA repair protein RadA low > 71
Pectobacterium carotovorum WPP14 0.78 HER17_RS11290 ATP-dependent DNA helicase 0.89 HER17_RS19085 DNA repair protein RadA low > 75
Erwinia tracheiphila SCR3 0.78 LU632_RS13150 ATP-dependent DNA helicase 0.94 LU632_RS02550 radA DNA repair protein RadA low > 74
Dickeya dianthicola ME23 0.78 DZA65_RS11620 ATP-dependent DNA helicase 0.86 DZA65_RS02485 DNA repair protein RadA low > 75
Enterobacter asburiae PDN3 0.78 EX28DRAFT_0750 Rad3-related DNA helicases 0.92 EX28DRAFT_3597 DNA repair protein RadA low > 76
Enterobacter sp. TBS_079 0.78 MPMX20_02714 putative ATP-dependent DNA helicase YoaA 0.92 MPMX20_00694 DNA repair protein RadA low > 85
Klebsiella michiganensis M5al 0.78 BWI76_RS17815 ATP-dependent helicase 0.93 BWI76_RS04165 DNA repair protein RadA low > 92
Rahnella sp. WP5 0.77 EX31_RS10615 ATP-dependent DNA helicase 0.92 EX31_RS04030 DNA repair protein RadA low > 89
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_09930 ATP-dependent DNA helicase 0.77 CSW01_11870 DNA repair protein RadA low > 62
Alteromonas macleodii MIT1002 0.51 MIT1002_02593 putative ATP-dependent helicase DinG 0.72 MIT1002_02706 Lon protease 2 low > 70
Shewanella oneidensis MR-1 0.44 SO2081 ATP-dependent helicase, DinG family (NCBI ptt file) 0.76 SO1226 radA DNA repair protein RadA (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.44 Shewana3_1859 helicase c2 (RefSeq) 0.75 Shewana3_1049 DNA repair protein RadA (RefSeq) low > 73
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS07580 helicase 0.54 RR42_RS12030 DNA repair protein RadA — —
Kangiella aquimarina DSM 16071 0.42 B158DRAFT_2492 Rad3-related DNA helicases 0.60 B158DRAFT_0877 DNA replication and repair protein RadA 0.85 1
Rhodanobacter denitrificans MT42 0.41 LRK55_RS12465 ATP-dependent DNA helicase 0.57 LRK55_RS02280 DNA repair protein RadA low > 63
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS12765 ATP-dependent DNA helicase 0.57 LRK54_RS02525 DNA repair protein RadA low > 59
Shewanella loihica PV-4 0.41 Shew_2196 helicase c2 (RefSeq) 0.36 Shew_2807 DNA repair protein RadA (RefSeq) 0.83 3
Dechlorosoma suillum PS 0.41 Dsui_2149 DNA helicase, Rad3 0.53 Dsui_2413 DNA repair protein RadA low > 51
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS01530 ATP-dependent DNA helicase 0.53 RALBFv3_RS00210 DNA repair protein RadA low > 76
Ralstonia solanacearum UW163 0.41 UW163_RS14840 ATP-dependent DNA helicase 0.53 UW163_RS13540 DNA repair protein RadA — —
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_02195 dinG helicase 0.57 OKGIIK_09580 radA DNA repair protein RadA low > 52
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS19750 ATP-dependent DNA helicase 0.57 ABZR86_RS08845 DNA repair protein RadA low > 74
Ralstonia solanacearum PSI07 0.41 RPSI07_RS15960 ATP-dependent DNA helicase 0.52 RPSI07_RS17270 DNA repair protein RadA — —
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS13325 ATP-dependent DNA helicase 0.53 ABZR87_RS11670 DNA repair protein RadA low > 80
Ralstonia solanacearum GMI1000 0.40 RS_RS08195 ATP-dependent DNA helicase 0.53 RS_RS06880 DNA repair protein RadA low > 80
Shewanella amazonensis SB2B 0.39 Sama_1940 ATP-dependent helicase DinG (RefSeq) 0.74 Sama_0981 DNA repair protein RadA (RefSeq) 0.74 3
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS14855 helicase 0.52 HSERO_RS10745 DNA repair protein RadA low > 78
Xanthomonas campestris pv. campestris strain 8004 0.38 Xcc-8004.1496.1 DinG family ATP-dependent helicase YoaA 0.58 Xcc-8004.3812.1 DNA repair protein RadA low > 74
Paraburkholderia sabiae LMG 24235 0.38 QEN71_RS06060 ATP-dependent DNA helicase 0.54 QEN71_RS06320 DNA repair protein RadA low > 153
Lysobacter sp. OAE881 0.38 ABIE51_RS05195 ATP-dependent DNA helicase 0.56 ABIE51_RS07685 DNA repair protein RadA 0.38 9
Burkholderia phytofirmans PsJN 0.38 BPHYT_RS12495 helicase 0.53 BPHYT_RS12235 DNA repair protein RadA low > 109
Paraburkholderia bryophila 376MFSha3.1 0.38 H281DRAFT_00533 ATP-dependent DNA helicase DinG 0.53 H281DRAFT_00590 DNA replication and repair protein RadA low > 103
Paraburkholderia graminis OAS925 0.38 ABIE53_002724 ATP-dependent DNA helicase DinG 0.53 ABIE53_002526 DNA repair protein RadA/Sms low > 113
Castellaniella sp019104865 MT123 0.35 ABCV34_RS01875 ATP-dependent DNA helicase 0.52 ABCV34_RS02345 DNA repair protein RadA low > 48
Acidovorax sp. GW101-3H11 0.34 Ac3H11_2460 DinG family ATP-dependent helicase YoaA 0.52 Ac3H11_3371 DNA repair protein RadA low > 79
Variovorax sp. OAS795 0.34 ABID97_RS14180 ATP-dependent DNA helicase 0.52 ABID97_RS03770 DNA repair protein RadA low > 91
Variovorax sp. SCN45 0.33 GFF986 DinG family ATP-dependent helicase YoaA 0.52 GFF5087 DNA repair protein RadA low > 127
Fusobacterium nucleatum SB010 0.26 HUW76_04565 ATP-dependent DNA helicase 0.33 HUW76_02270 DNA repair protein RadA 0.96 2
Mycobacterium tuberculosis H37Rv 0.21 Rv1329c Probable ATP-dependent helicase DinG 0.33 Rv3585 DNA repair protein RadA (DNA repair protein SMS) low > 58
Hydrogenophaga sp. GW460-11-11-14-LB1 0.18 GFF4872 DinG family ATP-dependent helicase YoaA 0.49 GFF1833 DNA repair protein RadA low > 90

Not shown: 0 genomes with orthologs for IAI47_08820 only; 45 genomes with orthologs for IAI47_16345 only