| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Serratia liquefaciens MT49 | 1.0 | IAI46_01880 | | transcription elongation factor GreA | 1.0 | IAI46_19460 | | two-component system response regulator GlrR | 0.53 | 8 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.89 | GFF2922 | | Transcription elongation factor GreA | 0.89 | GFF2455 | | Putative sensory histidine kinase YfhA | low | > 78 |
| Klebsiella michiganensis M5al | 0.89 | BWI76_RS25160 | | transcription elongation factor GreA | 0.87 | BWI76_RS21250 | | two-component system response regulator GlrR | low | > 92 |
| Rahnella sp. WP5 | 0.89 | EX31_RS08595 | | transcription elongation factor GreA | 0.90 | EX31_RS20615 | | two-component system response regulator GlrR | low | > 89 |
| Escherichia coli ECRC101 | 0.88 | MCAODC_08565 | greA | transcription elongation factor GreA | 0.86 | MCAODC_12025 | qseF | two-component system response regulator QseF/GlrR | — | — |
| Escherichia coli ECRC62 | 0.88 | BNILDI_01690 | greA | transcription elongation factor GreA | 0.86 | BNILDI_11970 | qseF | two-component system response regulator QseF/GlrR | — | — |
| Escherichia fergusonii Becca | 0.88 | EFB2_00642 | | Transcription elongation factor GreA | 0.86 | EFB2_01342 | | Transcriptional regulatory protein QseF | low | > 86 |
| Escherichia coli ECRC98 | 0.88 | JDDGAC_21670 | greA | transcription elongation factor GreA | 0.86 | JDDGAC_25160 | qseF | two-component system response regulator QseF/GlrR | — | — |
| Enterobacter sp. TBS_079 | 0.88 | MPMX20_04085 | | Transcription elongation factor GreA | 0.89 | MPMX20_03423 | | Transcriptional regulatory protein QseF | low | > 85 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.88 | OHPLBJKB_00519 | | Transcription elongation factor GreA | 0.86 | OHPLBJKB_01153 | | Transcriptional regulatory protein GlrR | low | > 73 |
| Escherichia coli ECOR27 | 0.88 | NOLOHH_09845 | greA | transcription elongation factor GreA | 0.86 | NOLOHH_13170 | qseF | two-component system response regulator QseF/GlrR | — | — |
| Escherichia coli ECOR38 | 0.88 | HEPCGN_16920 | greA | transcription elongation factor GreA | 0.86 | HEPCGN_20640 | qseF | two-component system response regulator QseF/GlrR | — | — |
| Escherichia coli Nissle 1917 | 0.88 | ECOLIN_RS18320 | | transcription elongation factor GreA | 0.86 | ECOLIN_RS14455 | | two-component system response regulator GlrR | — | — |
| Enterobacter asburiae PDN3 | 0.88 | EX28DRAFT_3232 | | transcription elongation factor GreA | 0.89 | EX28DRAFT_0096 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.88 | HER17_RS18330 | | transcription elongation factor GreA | 0.92 | HER17_RS05925 | | two-component system response regulator GlrR | — | — |
| Escherichia coli ECRC99 | 0.88 | KEDOAH_10105 | greA | transcription elongation factor GreA | 0.86 | KEDOAH_06725 | qseF | two-component system response regulator QseF/GlrR | — | — |
| Escherichia coli BL21 | 0.88 | ECD_03046 | | transcript cleavage factor | 0.86 | ECD_02446 | | response regulator regulating glmY sRNA in two-component system with sensor protein GlrK | low | > 60 |
| Escherichia coli ECRC101 | 0.88 | OKFHMN_18045 | greA | transcription elongation factor GreA | 0.86 | OKFHMN_21495 | qseF | two-component system response regulator QseF/GlrR | — | — |
| Escherichia coli BW25113 | 0.88 | b3181 | greA | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | 0.86 | b2554 | yfhA | predicted DNA-binding response regulator in two-component system (NCBI) | low | > 76 |
| Escherichia coli ECRC102 | 0.88 | NIAGMN_15805 | greA | transcription elongation factor GreA | 0.86 | NIAGMN_19265 | qseF | two-component system response regulator QseF/GlrR | — | — |
| Dickeya dadantii 3937 | 0.87 | DDA3937_RS03015 | | transcription elongation factor GreA | 0.90 | DDA3937_RS15640 | | two-component system response regulator GlrR | — | — |
| Pantoea sp. MT58 | 0.86 | IAI47_17080 | | transcription elongation factor GreA | 0.84 | IAI47_04945 | | two-component system response regulator GlrR | low | > 76 |
| Dickeya dianthicola 67-19 | 0.86 | HGI48_RS03185 | | transcription elongation factor GreA | 0.89 | HGI48_RS15735 | | two-component system response regulator GlrR | low | > 71 |
| Dickeya dianthicola ME23 | 0.86 | DZA65_RS03180 | | transcription elongation factor GreA | 0.89 | DZA65_RS16815 | | two-component system response regulator GlrR | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.79 | LU632_RS21165 | greA | transcription elongation factor GreA | 0.85 | LU632_RS17930 | glrR | two-component system response regulator GlrR | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.74 | MIT1002_01468 | | Transcript cleavage factor GreA | 0.63 | MIT1002_01326 | | Quorum-sensing regulator protein F | low | > 70 |
| Shewanella oneidensis MR-1 | 0.72 | SO1191 | greA | transcription elongation factor GreA (NCBI ptt file) | 0.33 | SO3230 | flrC | flagellar regulatory protein C (NCBI ptt file) | 0.36 | 57 |
| Shewanella sp. ANA-3 | 0.72 | Shewana3_1017 | | transcription elongation factor GreA (RefSeq) | 0.33 | Shewana3_1340 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | low | > 73 |
| Kangiella aquimarina DSM 16071 | 0.69 | B158DRAFT_0617 | | transcription elongation factor GreA | 0.30 | B158DRAFT_0521 | | PEP-CTERM-box response regulator transcription factor | low | > 40 |
| Shewanella loihica PV-4 | 0.69 | Shew_2837 | | transcription elongation factor GreA (RefSeq) | 0.35 | Shew_2341 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | low | > 60 |
| Marinobacter adhaerens HP15 | 0.64 | HP15_3076 | | protein containing prokaryotic transcription elongation factor GreA domain | 0.35 | HP15_523 | | two component, sigma54 specific, transcriptional regulator, Fis family | 0.45 | 4 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.59 | Xcc-8004.2911.1 | | Transcription elongation factor GreA | 0.30 | Xcc-8004.1353.1 | | Type IV fimbriae expression regulatory protein PilR | low | > 74 |
| Pseudomonas sp. S08-1 | 0.58 | OH686_17085 | | Transcription elongation factor GreA | 0.34 | OH686_16390 | | Type IV fimbriae expression regulatory protein PilR | low | > 80 |
| Dechlorosoma suillum PS | 0.58 | Dsui_3063 | | transcription elongation factor GreA | 0.57 | Dsui_2360 | | response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains | low | > 51 |
| Vibrio cholerae E7946 ATCC 55056 | 0.58 | CSW01_03330 | | transcription elongation factor GreA | 0.33 | CSW01_10660 | | sigma-54-dependent Fis family transcriptional regulator | low | > 62 |
| Pseudomonas fluorescens FW300-N2E2 | 0.58 | Pf6N2E2_3363 | | Transcription elongation factor GreA | 0.34 | Pf6N2E2_5122 | | Type IV fimbriae expression regulatory protein PilR | — | — |
| Burkholderia phytofirmans PsJN | 0.57 | BPHYT_RS14185 | | transcription elongation factor GreA | 0.34 | BPHYT_RS30045 | | ATPase AAA | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.57 | AO356_07475 | | transcription elongation factor GreA | 0.33 | AO356_15905 | | transcriptional regulator | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.56 | A4249_RS00695 | | transcription elongation factor GreA | 0.33 | A4249_RS04415 | | sigma-54 dependent transcriptional regulator | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.56 | H281DRAFT_04404 | | GreA/GreB family elongation factor | 0.32 | H281DRAFT_01779 | | DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains | low | > 103 |
| Pseudomonas sp. RS175 | 0.56 | PFR28_00078 | | Transcription elongation factor GreA | 0.33 | PFR28_03751 | | Regulatory protein AtoC | — | — |
| Acidovorax sp. GW101-3H11 | 0.55 | Ac3H11_437 | | Transcription elongation factor GreA | 0.54 | Ac3H11_4011 | | Putative sensory histidine kinase YfhA | low | > 79 |
| Castellaniella sp019104865 MT123 | 0.55 | ABCV34_RS15540 | | transcription elongation factor GreA | 0.30 | ABCV34_RS02725 | | sigma-54 dependent transcriptional regulator | low | > 48 |
| Ralstonia solanacearum IBSBF1503 | 0.55 | RALBFv3_RS02185 | | transcription elongation factor GreA | 0.33 | RALBFv3_RS10795 | | sigma-54-dependent Fis family transcriptional regulator | low | > 76 |
| Ralstonia solanacearum UW163 | 0.55 | UW163_RS15495 | | transcription elongation factor GreA | 0.33 | UW163_RS02785 | | sigma-54-dependent Fis family transcriptional regulator | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.54 | GFF4897 | | Transcription elongation factor GreA | 0.56 | GFF610 | | Putative sensory histidine kinase YfhA | low | > 90 |
| Azospirillum sp. SherDot2 | 0.54 | MPMX19_02300 | | Transcription elongation factor GreA | 0.37 | MPMX19_04251 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | low | > 112 |
| Ralstonia solanacearum GMI1000 | 0.54 | RS_RS07635 | | transcription elongation factor GreA | 0.32 | RS_RS01635 | | sigma-54-dependent Fis family transcriptional regulator | — | — |
| Herbaspirillum seropedicae SmR1 | 0.52 | HSERO_RS06930 | | transcription elongation factor GreA | 0.53 | HSERO_RS23710 | | response regulator GlrR | — | — |
| Variovorax sp. OAS795 | 0.52 | ABID97_RS17070 | | transcription elongation factor GreA | 0.56 | ABID97_RS06460 | | sigma 54-interacting transcriptional regulator | low | > 91 |
| Variovorax sp. SCN45 | 0.52 | GFF374 | | Transcription elongation factor GreA | 0.56 | GFF7323 | | Transcriptional response regulatory protein GlrR | low | > 127 |
| Azospirillum brasilense Sp245 | 0.51 | AZOBR_RS12900 | | transcription elongation factor GreA | 0.35 | AZOBR_RS21130 | | Fis family transcriptional regulator | — | — |
| Magnetospirillum magneticum AMB-1 | 0.50 | AMB_RS03610 | | transcription elongation factor GreA | 0.32 | AMB_RS09665 | | sigma-54-dependent Fis family transcriptional regulator | low | > 64 |
| Agrobacterium fabrum C58 | 0.50 | Atu2182 | | transcription elongation facto | 0.34 | Atu3296 | | two component response regulator for C4-dicarboxylate transport | — | — |
| Sinorhizobium meliloti 1021 | 0.49 | SMc01218 | | transcription elongation factor GreA | 0.34 | SM_b20613 | | C4-dicarboxylate transport transcriptional regulator | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.43 | DVU3245 | greA | transcription elongation factor GreA (TIGR) | 0.37 | DVU0946 | | sigma-54 dependent transcriptional regulator/response regulator (TIGR) | low | > 55 |
| Desulfovibrio vulgaris Miyazaki F | 0.43 | DvMF_0383 | greA | transcription elongation factor GreA (RefSeq) | 0.38 | DvMF_2601 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | low | > 51 |
| Phocaeicola dorei CL03T12C01 | 0.38 | ABI39_RS04145 | | transcription elongation factor GreA | 0.34 | ABI39_RS02120 | | sigma-54-dependent Fis family transcriptional regulator | low | > 72 |
| Parabacteroides merdae CL09T00C40 | 0.37 | HMPREF1078_RS17725 | | transcription elongation factor GreA | 0.32 | HMPREF1078_RS07540 | | sigma-54 dependent transcriptional regulator | low | > 61 |
| Phocaeicola vulgatus CL09T03C04 | 0.37 | HMPREF1058_RS12565 | | transcription elongation factor GreA | 0.34 | HMPREF1058_RS02780 | | sigma-54-dependent Fis family transcriptional regulator | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.36 | ABZR88_RS00130 | | transcription elongation factor GreA | 0.36 | ABZR88_RS12650 | | sigma-54 dependent transcriptional regulator | low | > 71 |
Not shown: 37 genomes with orthologs for IAI46_01880 only; 1 genomes with orthologs for IAI46_19460 only