Conservation of cofitness between HSERO_RS03410 and HSERO_RS21985 in Herbaspirillum seropedicae SmR1

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS03410 polyisoprenoid-binding protein 1.0 HSERO_RS21985 transcriptional regulator 0.31 1
Ralstonia sp. UNC404CL21Col 0.66 ABZR87_RS01300 YceI family protein 0.65 ABZR87_RS22890 response regulator transcription factor low > 80
Ralstonia solanacearum PSI07 0.65 RPSI07_RS11595 polyisoprenoid-binding protein 0.65 RPSI07_RS07290 DNA-binding response regulator low > 81
Burkholderia phytofirmans PsJN 0.65 BPHYT_RS03435 polyisoprenoid-binding protein 0.68 BPHYT_RS16220 transcriptional regulator — —
Paraburkholderia graminis OAS925 0.64 ABIE53_000826 polyisoprenoid-binding protein YceI 0.68 ABIE53_003418 two-component system response regulator QseB low > 113
Ralstonia solanacearum IBSBF1503 0.64 RALBFv3_RS05705 polyisoprenoid-binding protein 0.64 RALBFv3_RS16415 DNA-binding response regulator low > 76
Ralstonia solanacearum UW163 0.64 UW163_RS07920 polyisoprenoid-binding protein 0.64 UW163_RS17155 DNA-binding response regulator — —
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS26665 YceI family protein 0.67 QEN71_RS02475 response regulator low > 153
Ralstonia solanacearum GMI1000 0.64 RS_RS13595 polyisoprenoid-binding protein 0.65 RS_RS24590 DNA-binding response regulator low > 80
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_04665 Polyisoprenoid-binding protein YceI 0.69 H281DRAFT_04180 two component transcriptional regulator, winged helix family low > 103
Cupriavidus basilensis FW507-4G11 0.61 RR42_RS17440 polyisoprenoid-binding protein 0.63 RR42_RS37390 XRE family transcriptional regulator low > 128
Rhodanobacter denitrificans FW104-10B01 0.54 LRK54_RS05295 YceI family protein 0.48 LRK54_RS07600 response regulator 0.26 9
Rhodanobacter denitrificans MT42 0.54 LRK55_RS05075 YceI family protein 0.48 LRK55_RS07340 response regulator low > 63
Lysobacter sp. OAE881 0.53 ABIE51_RS14890 YceI family protein 0.48 ABIE51_RS00875 response regulator transcription factor low > 62
Acidovorax sp. GW101-3H11 0.45 Ac3H11_3546 Protein yceI precursor 0.65 Ac3H11_3946 Two-component system response regulator QseB low > 79
Variovorax sp. OAS795 0.42 ABID97_RS04790 YceI family protein 0.65 ABID97_RS14955 response regulator low > 91
Dechlorosoma suillum PS 0.40 Dsui_2357 hypothetical protein 0.55 Dsui_2248 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain — —
Variovorax sp. SCN45 0.40 GFF6286 Probable signal peptide protein 0.65 GFF1175 Two-component system response regulator QseB low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF95 Probable signal peptide protein 0.62 GFF700 Two-component system response regulator QseB low > 90
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.30 GFF2611 FIG01200701: possible membrane protein 0.51 GFF3138 Two-component system response regulator QseB — —
Azospirillum sp. SherDot2 0.30 MPMX19_03035 Protein YceI 0.44 MPMX19_04078 Virulence transcriptional regulatory protein PhoP low > 112
Azospirillum brasilense Sp245 0.28 AZOBR_RS24000 polyprenyl-pyrophosphate binding protein 0.44 AZOBR_RS18790 transcriptional regulator low > 97
Acinetobacter radioresistens SK82 0.25 MPMX26_01773 Protein YceI 0.50 MPMX26_02034 Transcriptional regulatory protein QseB — —
Rhodanobacter sp. FW510-T8 0.23 OKGIIK_16900 yceI polyisoprenoid-binding protein 0.46 OKGIIK_14050 ompR DNA-binding response regulator low > 52
Pseudomonas fluorescens FW300-N2E3 0.23 AO353_08035 hypothetical protein 0.57 AO353_23010 XRE family transcriptional regulator low > 101
Pseudomonas putida KT2440 0.22 PP_4981 polyisoprene-binding protein, acidic stress response factor 0.54 PP_2713 DNA-binding response regulator low > 96
Escherichia coli ECRC99 0.22 KEDOAH_23995 yceI YceI family protein 0.50 KEDOAH_09265 Transcriptional regulatory protein QseB — —
Pseudomonas simiae WCS417 0.22 PS417_26530 hypothetical protein 0.58 PS417_13595 XRE family transcriptional regulator low > 88
Escherichia coli BW25113 0.22 b1056 yceI hypothetical protein (NCBI) 0.51 b3025 qseB DNA-binding response regulator in two-component regulatory system with QseC (NCBI) low > 76
Escherichia coli BL21 0.22 ECD_01052 periplasmic high pH-inducible lipid-binding protein 0.50 ECD_02897 quorum sensing DNA-binding response regulator in two-component regulatory system with QseC — —
Escherichia coli ECOR27 0.22 NOLOHH_21290 yceI YceI family protein 0.50 NOLOHH_10660 Transcriptional regulatory protein QseB low > 75
Escherichia coli ECRC62 0.22 BNILDI_19450 yceI YceI family protein 0.50 BNILDI_00855 Transcriptional regulatory protein QseB low > 75
Escherichia coli ECRC101 0.22 MCAODC_23120 yceI YceI family protein 0.50 MCAODC_09395 Transcriptional regulatory protein QseB low > 87
Escherichia coli ECRC102 0.22 NIAGMN_24070 yceI YceI family protein 0.50 NIAGMN_16645 Transcriptional regulatory protein QseB — —
Escherichia coli ECRC100 0.22 OKFHMN_03760 yceI YceI family protein 0.50 OKFHMN_18880 Transcriptional regulatory protein QseB — —
Escherichia coli ECRC98 0.22 JDDGAC_07420 yceI YceI family protein 0.50 JDDGAC_22515 Transcriptional regulatory protein QseB low > 86
Brevundimonas sp. GW460-12-10-14-LB2 0.21 A4249_RS15520 YceI family protein 0.41 A4249_RS11495 response regulator transcription factor low > 48
Escherichia fergusonii Becca 0.21 EFB2_02918 Protein YceI 0.50 EFB2_00788 Transcriptional regulatory protein QseB low > 86
Pseudomonas fluorescens SBW25 0.21 PFLU_RS28185 YceI family protein 0.56 PFLU_RS15245 response regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS28185 YceI family protein 0.56 PFLU_RS15245 response regulator low > 109
Erwinia tracheiphila SCR3 0.21 LU632_RS10305 YceI family protein 0.45 LU632_RS21175 pmrA two-component system response regulator PmrA low > 74
Vibrio cholerae E7946 ATCC 55056 0.21 CSW01_16930 YceI family protein 0.46 CSW01_19595 DNA-binding response regulator low > 62
Escherichia coli Nissle 1917 0.21 ECOLIN_RS06130 YceI family protein 0.50 ECOLIN_RS17425 quorum sensing response regulator transcription factor QseB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.21 OHPLBJKB_02609 Protein YceI 0.50 OHPLBJKB_00677 Transcriptional regulatory protein QseB low > 73
Pseudomonas stutzeri RCH2 0.21 Psest_0308 Uncharacterized conserved protein 0.57 Psest_3476 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain — —
Enterobacter asburiae PDN3 0.21 EX28DRAFT_1875 Uncharacterized conserved protein 0.51 EX28DRAFT_3057 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 76
Escherichia coli ECOR38 0.21 HEPCGN_23730 yceI YceI family protein 0.50 HEPCGN_17740 Quorum sensing DNA-binding response regulator in two-component regulatory system with QseC low > 87
Alteromonas macleodii MIT1002 0.21 MIT1002_03884 hypothetical protein 0.47 MIT1002_00810 Transcriptional regulatory protein BasR low > 70
Caulobacter crescentus NA1000 0.20 CCNA_02203 YceI-like domain protein 0.43 CCNA_01362 two-component response regulator low > 66
Caulobacter crescentus NA1000 Δfur 0.20 CCNA_02203 YceI-like domain protein 0.43 CCNA_01362 two-component response regulator low > 67
Enterobacter sp. TBS_079 0.20 MPMX20_01736 Protein YceI 0.51 MPMX20_03863 Transcriptional regulatory protein QseB low > 85
Marinobacter adhaerens HP15 0.20 HP15_2523 hypothetical protein 0.42 HP15_3968 two component transcriptional regulator, winged helix family low > 73
Pseudomonas sp. S08-1 0.20 OH686_10840 Protein yceI precursor 0.60 OH686_04665 Two-component system response regulator QseB low > 80
Dickeya dadantii 3937 0.20 DDA3937_RS13190 YceI family protein 0.45 DDA3937_RS19350 two-component system response regulator PmrA low > 74
Serratia liquefaciens MT49 0.20 IAI46_09690 YceI family protein 0.47 IAI46_21235 response regulator low > 86
Shewanella loihica PV-4 0.19 Shew_1121 hypothetical protein (RefSeq) 0.38 Shew_2695 two component transcriptional regulator (RefSeq) low > 60
Dickeya dianthicola 67-19 0.19 HGI48_RS13255 YceI family protein 0.53 HGI48_RS21345 response regulator low > 71
Dickeya dianthicola ME23 0.19 DZA65_RS13730 YceI family protein 0.52 DZA65_RS22325 response regulator low > 75
Shewanella sp. ANA-3 0.18 Shewana3_1179 hypothetical protein (RefSeq) 0.40 Shewana3_1885 two component transcriptional regulator (RefSeq) — —
Rahnella sp. WP5 0.18 EX31_RS24340 YceI family protein 0.49 EX31_RS03275 response regulator low > 89
Pseudomonas fluorescens FW300-N2E2 0.18 Pf6N2E2_4634 Protein yceI precursor 0.58 Pf6N2E2_1539 Two-component system response regulator QseB low > 103
Pectobacterium carotovorum WPP14 0.18 HER17_RS08575 YceI family protein 0.47 HER17_RS21560 response regulator low > 75
Shewanella oneidensis MR-1 0.16 SO3370 conserved hypothetical protein (NCBI ptt file) 0.40 SO2104 DNA-binding response regulator YgiX, putative (NCBI ptt file) low > 76

Not shown: 9 genomes with orthologs for HSERO_RS03410 only; 16 genomes with orthologs for HSERO_RS21985 only