| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS01920 | | 50S ribosomal protein L11 methyltransferase | 1.0 | HSERO_RS13890 | | LuxR family transcriptional regulator | 0.78 | 11 |
| Paraburkholderia sabiae LMG 24235 | 0.61 | QEN71_RS27175 | | 50S ribosomal protein L11 methyltransferase | 0.54 | QEN71_RS00505 | | response regulator transcription factor RqpR | low | > 153 |
| Ralstonia sp. UNC404CL21Col | 0.61 | ABZR87_RS01660 | | 50S ribosomal protein L11 methyltransferase | 0.54 | ABZR87_RS06400 | | response regulator transcription factor | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.60 | ABIE53_003569 | | ribosomal protein L11 methyltransferase | 0.53 | ABIE53_000448 | | two-component system invasion response regulator UvrY | 0.25 | 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.59 | H281DRAFT_06282 | | [LSU ribosomal protein L11P]-lysine N-methyltransferase | 0.53 | H281DRAFT_02179 | | two component transcriptional regulator, LuxR family | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.59 | BPHYT_RS17020 | | ribosomal protein L11 methyltransferase | 0.53 | BPHYT_RS01790 | | LuxR family transcriptional regulator | low | > 109 |
| Ralstonia solanacearum GMI1000 | 0.59 | RS_RS13945 | | 50S ribosomal protein L11 methyltransferase | 0.55 | RS_RS01435 | | DNA-binding response regulator | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.59 | RPSI07_RS11245 | | 50S ribosomal protein L11 methyltransferase | 0.54 | RPSI07_RS22720 | | DNA-binding response regulator | low | > 81 |
| Ralstonia solanacearum UW163 | 0.58 | UW163_RS07625 | | 50S ribosomal protein L11 methyltransferase | 0.54 | UW163_RS02980 | | DNA-binding response regulator | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.58 | RALBFv3_RS06000 | | 50S ribosomal protein L11 methyltransferase | 0.54 | RALBFv3_RS10600 | | DNA-binding response regulator | low | > 76 |
| Castellaniella sp019104865 MT123 | 0.49 | ABCV34_RS10670 | | 50S ribosomal protein L11 methyltransferase | 0.44 | ABCV34_RS08970 | | response regulator transcription factor | low | > 48 |
| Dechlorosoma suillum PS | 0.48 | Dsui_0390 | | ribosomal protein L11 methyltransferase | 0.44 | Dsui_2158 | | response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | low | > 51 |
| Acidovorax sp. GW101-3H11 | 0.40 | Ac3H11_4027 | | Ribosomal protein L11 methyltransferase (EC 2.1.1.-) | 0.48 | Ac3H11_3852 | | DNA-binding response regulator, LuxR family | — | — |
| Shewanella sp. ANA-3 | 0.39 | Shewana3_0400 | prmA | ribosomal protein L11 methyltransferase (RefSeq) | 0.38 | Shewana3_1608 | | response regulator (RefSeq) | low | > 73 |
| Pantoea sp. MT58 | 0.38 | IAI47_02390 | | 50S ribosomal protein L11 methyltransferase | 0.35 | IAI47_12470 | | UvrY/SirA/GacA family response regulator transcription factor | low | > 76 |
| Shewanella oneidensis MR-1 | 0.38 | SO0395 | prmA | ribosomal protein L11 methyltransferase (NCBI ptt file) | 0.38 | SO1860 | | DNA-binding response regulator, LuxR family (NCBI ptt file) | low | > 76 |
| Vibrio cholerae E7946 ATCC 55056 | 0.37 | CSW01_01500 | | 50S ribosomal protein L11 methyltransferase | 0.39 | CSW01_06135 | | two-component system response regulator UvrY | — | — |
| Pseudomonas stutzeri RCH2 | 0.37 | Psest_1018 | | ribosomal protein L11 methyltransferase | 0.38 | Psest_3659 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | 0.13 | 59 |
| Pectobacterium carotovorum WPP14 | 0.36 | HER17_RS20225 | | 50S ribosomal protein L11 methyltransferase | 0.37 | HER17_RS07710 | | UvrY/SirA/GacA family response regulator transcription factor | low | > 75 |
| Rahnella sp. WP5 | 0.36 | EX31_RS12190 | | 50S ribosomal protein L11 methyltransferase | 0.37 | EX31_RS24145 | | UvrY/SirA/GacA family response regulator transcription factor | low | > 89 |
| Shewanella amazonensis SB2B | 0.36 | Sama_3224 | prmA | ribosomal protein L11 methyltransferase (RefSeq) | 0.37 | Sama_1607 | | response regulator (RefSeq) | low | > 62 |
| Dickeya dadantii 3937 | 0.36 | DDA3937_RS01380 | | 50S ribosomal protein L11 methyltransferase | 0.38 | DDA3937_RS13705 | | UvrY/SirA/GacA family response regulator transcription factor | low | > 74 |
| Dickeya dianthicola ME23 | 0.36 | DZA65_RS01360 | | 50S ribosomal protein L11 methyltransferase | 0.38 | DZA65_RS14290 | | UvrY/SirA/GacA family response regulator transcription factor | low | > 75 |
| Serratia liquefaciens MT49 | 0.36 | IAI46_22770 | | 50S ribosomal protein L11 methyltransferase | 0.37 | IAI46_09205 | | UvrY/SirA/GacA family response regulator transcription factor | low | > 86 |
| Dickeya dianthicola 67-19 | 0.36 | HGI48_RS01300 | | 50S ribosomal protein L11 methyltransferase | 0.38 | HGI48_RS13800 | | UvrY/SirA/GacA family response regulator transcription factor | low | > 71 |
| Pseudomonas syringae pv. syringae B728a | 0.36 | Psyr_4402 | | [LSU ribosomal protein L11P]-lysine N-methyltransferase | 0.39 | Psyr_4618 | | regulatory protein, LuxR:Response regulator receiver | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.36 | Psyr_4402 | | [LSU ribosomal protein L11P]-lysine N-methyltransferase | 0.39 | Psyr_4618 | | regulatory protein, LuxR:Response regulator receiver | low | > 86 |
| Pseudomonas putida KT2440 | 0.35 | PP_4818 | | ribosomal protein L11 methyltransferase | 0.37 | PP_0410 | | DNA-binding response regulator UhpA | low | > 96 |
| Shewanella loihica PV-4 | 0.35 | Shew_0331 | prmA | ribosomal protein L11 methyltransferase (RefSeq) | 0.38 | Shew_1824 | | response regulator (RefSeq) | — | — |
| Pseudomonas simiae WCS417 | 0.35 | PS417_02960 | | ribosomal protein L11 methyltransferase | 0.40 | PS417_25765 | | transcriptional regulator | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.35 | PFLU_RS03035 | | 50S ribosomal protein L11 methyltransferase | 0.40 | PFLU_RS27420 | | response regulator transcription factor | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.35 | PFLU_RS03035 | | 50S ribosomal protein L11 methyltransferase | 0.40 | PFLU_RS27420 | | response regulator transcription factor | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.35 | Pf6N2E2_3514 | | Ribosomal protein L11 methyltransferase (EC 2.1.1.-) | 0.39 | Pf6N2E2_4814 | | DNA-binding response regulator, LuxR family, near polyamine transporter | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.35 | PfGW456L13_53 | | Ribosomal protein L11 methyltransferase (EC 2.1.1.-) | 0.42 | PfGW456L13_3685 | | DNA-binding response regulator, LuxR family | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.35 | AO356_08205 | | ribosomal protein L11 methyltransferase | 0.40 | AO356_14380 | | transcriptional regulator | low | > 104 |
| Pseudomonas sp. S08-1 | 0.34 | OH686_07600 | | ribosomal protein L11 methyltransferase | 0.38 | OH686_15085 | | DNA-binding response regulator, LuxR family, near polyamine transporter | low | > 80 |
| Pseudomonas fluorescens FW300-N1B4 | 0.34 | Pf1N1B4_1310 | | Ribosomal protein L11 methyltransferase (EC 2.1.1.-) | 0.40 | Pf1N1B4_2537 | | DNA-binding response regulator, LuxR family, near polyamine transporter | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.34 | AO353_13670 | | ribosomal protein L11 methyltransferase | 0.39 | AO353_07270 | | transcriptional regulator | low | > 101 |
| Erwinia tracheiphila SCR3 | 0.34 | LU632_RS21500 | prmA | 50S ribosomal protein L11 methyltransferase | 0.37 | LU632_RS10190 | uvrY | UvrY/SirA/GacA family response regulator transcription factor | — | — |
| Pseudomonas sp. RS175 | 0.33 | PFR28_05218 | | Ribosomal protein L11 methyltransferase | 0.40 | PFR28_04055 | | Response regulator UvrY | low | > 88 |
| Alteromonas macleodii MIT1002 | 0.32 | MIT1002_03956 | | Ribosomal protein L11 methyltransferase | 0.32 | MIT1002_02154 | | Response regulator UvrY | low | > 70 |
| Enterobacter asburiae PDN3 | 0.32 | EX28DRAFT_3311 | | ribosomal protein L11 methyltransferase | 0.36 | EX28DRAFT_0633 | | two component transcriptional regulator, LuxR family | low | > 76 |
| Enterobacter sp. TBS_079 | 0.32 | MPMX20_04167 | | Ribosomal protein L11 methyltransferase | 0.36 | MPMX20_02839 | | Response regulator UvrY | low | > 85 |
| Escherichia coli ECRC98 | 0.32 | JDDGAC_21315 | prmA | 50S ribosomal protein L11 methyltransferase | 0.36 | JDDGAC_00410 | uvrC | excinuclease ABC subunit UvrC | low | > 86 |
| Escherichia coli ECRC101 | 0.32 | MCAODC_08210 | prmA | 50S ribosomal protein L11 methyltransferase | 0.36 | MCAODC_19570 | uvrC | excinuclease ABC subunit UvrC | low | > 87 |
| Escherichia coli ECRC62 | 0.32 | BNILDI_02045 | prmA | 50S ribosomal protein L11 methyltransferase | 0.36 | BNILDI_15230 | uvrY | UvrY/SirA/GacA family response regulator transcription factor | low | > 75 |
| Escherichia coli ECOR38 | 0.32 | HEPCGN_16510 | prmA | 50S ribosomal protein L11 methyltransferase | 0.36 | HEPCGN_04175 | uvrC | excinuclease ABC subunit UvrC | 0.44 | 31 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.32 | OHPLBJKB_00446 | | Ribosomal protein L11 methyltransferase | 0.36 | OHPLBJKB_01815 | | Response regulator UvrY | low | > 73 |
| Escherichia fergusonii Becca | 0.32 | EFB2_00565 | | Ribosomal protein L11 methyltransferase | 0.36 | EFB2_02032 | | Response regulator UvrY | 0.50 | 48 |
| Escherichia coli Nissle 1917 | 0.32 | ECOLIN_RS18720 | | 50S ribosomal protein L11 methyltransferase | 0.36 | ECOLIN_RS10900 | | UvrY/SirA/GacA family response regulator transcription factor | — | — |
| Escherichia coli ECRC100 | 0.32 | OKFHMN_17690 | prmA | 50S ribosomal protein L11 methyltransferase | 0.36 | OKFHMN_25820 | uvrC | excinuclease ABC subunit UvrC | low | > 80 |
| Escherichia coli BW25113 | 0.32 | b3259 | prmA | ribosomal protein L11 methyltransferase (NCBI) | 0.36 | b1914 | uvrY | response regulator (NCBI) | 0.18 | 54 |
| Escherichia coli ECRC99 | 0.32 | KEDOAH_10460 | prmA | 50S ribosomal protein L11 methyltransferase | 0.36 | KEDOAH_02270 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli ECRC102 | 0.32 | NIAGMN_15450 | prmA | 50S ribosomal protein L11 methyltransferase | 0.36 | NIAGMN_02230 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli ECOR27 | 0.31 | NOLOHH_09475 | prmA | 50S ribosomal protein L11 methyltransferase | 0.36 | NOLOHH_16440 | uvrY | UvrY/SirA/GacA family response regulator transcription factor | low | > 75 |
| Klebsiella michiganensis M5al | 0.31 | BWI76_RS25555 | | 50S ribosomal protein L11 methyltransferase | 0.36 | BWI76_RS18335 | | DNA-binding response regulator | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.30 | GFF2125 | | Ribosomal protein L11 methyltransferase (EC 2.1.1.-) | 0.36 | GFF1699 | | BarA-associated response regulator UvrY (= GacA = SirA) | low | > 78 |
| Rhodanobacter sp. FW510-T8 | 0.30 | OKGIIK_16820 | prmA | 50S ribosomal protein L11 methyltransferase | 0.31 | OKGIIK_07415 | | DNA-binding response regulator | low | > 52 |
Not shown: 18 genomes with orthologs for HSERO_RS01920 only; 0 genomes with orthologs for HSERO_RS13890 only