Conservation of cofitness between HSERO_RS16435 and HSERO_RS09415 in Herbaspirillum seropedicae SmR1

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS16435 LOG family protein 1.0 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C 0.38 3
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS24290 TIGR00730 family Rossman fold protein 0.59 QEN71_RS04500 RluA family pseudouridine synthase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_04542 hypothetical protein 0.60 H281DRAFT_04340 23S rRNA pseudouridine955/2504/2580 synthase low > 103
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS06500 LOG family protein 0.59 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C low > 109
Paraburkholderia graminis OAS925 0.57 ABIE53_001565 uncharacterized protein (TIGR00730 family) 0.60 ABIE53_003058 23S rRNA pseudouridine955/2504/2580 synthase low > 113
Pseudomonas sp. S08-1 0.54 OH686_16655 Lysine decarboxylase family 0.41 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase low > 80
Ralstonia solanacearum GMI1000 0.54 RS_RS10470 TIGR00730 family Rossman fold protein 0.59 RS_RS05155 RluA family pseudouridine synthase low > 80
Ralstonia solanacearum PSI07 0.53 RPSI07_RS14205 TIGR00730 family Rossman fold protein 0.59 RPSI07_RS19085 RluA family pseudouridine synthase low > 81
Pseudomonas putida KT2440 0.53 PP_4871 putative lysine decarboxylase family protein 0.40 PP_1906 ribosomal large subunit pseudouridine synthase C low > 96
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_132 Lysine decarboxylase family 0.41 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 87
Pseudomonas fluorescens FW300-N2E2 0.53 Pf6N2E2_3589 Lysine decarboxylase family 0.42 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 103
Pseudomonas sp. RS175 0.53 PFR28_05145 'Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase' transl_table=11 0.42 PFR28_03018 Ribosomal large subunit pseudouridine synthase C low > 88
Ralstonia solanacearum UW163 0.52 UW163_RS10625 TIGR00730 family Rossman fold protein 0.59 UW163_RS11840 RluA family pseudouridine synthase — —
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_08535 LOG family protein 0.42 AO356_20125 23S rRNA pseudouridylate synthase low > 104
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS03100 TIGR00730 family Rossman fold protein 0.59 RALBFv3_RS14375 RluA family pseudouridine synthase low > 76
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_1389 Lysine decarboxylase family 0.41 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) — —
Ralstonia sp. UNC404CL21Col 0.52 ABZR87_RS15005 TIGR00730 family Rossman fold protein 0.60 ABZR87_RS10090 RluA family pseudouridine synthase low > 80
Azospirillum brasilense Sp245 0.52 AZOBR_RS14105 LOG family protein 0.21 AZOBR_RS06905 pseudouridine synthase low > 97
Dechlorosoma suillum PS 0.51 Dsui_0979 TIGR00730 family protein 0.52 Dsui_2437 pseudouridine synthase, RluA family low > 51
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS05385 LOG family protein 0.58 RR42_RS14155 pseudouridine synthase low > 128
Pseudomonas stutzeri RCH2 0.50 Psest_3243 TIGR00730 family protein 0.41 Psest_1680 pseudouridine synthase, RluA family — —
Xanthomonas campestris pv. campestris strain 8004 0.50 Xcc-8004.3415.1 Lysine decarboxylase family 0.34 Xcc-8004.2616.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 74
Pseudomonas fluorescens FW300-N2E3 0.50 AO353_13300 LOG family protein 0.42 AO353_01405 23S rRNA pseudouridylate synthase low > 101
Lysobacter sp. OAE881 0.49 ABIE51_RS08970 TIGR00730 family Rossman fold protein 0.35 ABIE51_RS11800 RluA family pseudouridine synthase low > 62
Dyella japonica UNC79MFTsu3.2 0.49 ABZR86_RS05935 TIGR00730 family Rossman fold protein 0.32 ABZR86_RS02725 RluA family pseudouridine synthase low > 74
Serratia liquefaciens MT49 0.49 IAI46_14285 TIGR00730 family Rossman fold protein 0.42 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_05925 TIGR00730 family Rossman fold protein 0.37 OKGIIK_07405 rluA 23S rRNA pseudouridine(955/2504/2580) synthase low > 52
Marinobacter adhaerens HP15 0.47 HP15_3835 conserved hypothetical protein 0.42 HP15_2221 pseudouridine synthase, RluA family low > 73
Rhodanobacter denitrificans MT42 0.46 LRK55_RS00740 TIGR00730 family Rossman fold protein 0.38 LRK55_RS17750 RluA family pseudouridine synthase low > 63
Acidovorax sp. GW101-3H11 0.46 Ac3H11_519 Lysine decarboxylase family 0.49 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 79
Rhodanobacter denitrificans FW104-10B01 0.46 LRK54_RS00965 TIGR00730 family Rossman fold protein 0.38 LRK54_RS17895 RluA family pseudouridine synthase low > 59
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF4273 Lysine decarboxylase family 0.47 GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 90
Dickeya dadantii 3937 0.45 DDA3937_RS17825 TIGR00730 family Rossman fold protein 0.41 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Acinetobacter radioresistens SK82 0.44 MPMX26_02735 Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase 0.35 MPMX26_00317 Ribosomal large subunit pseudouridine synthase C low > 36
Dickeya dianthicola 67-19 0.44 HGI48_RS17765 TIGR00730 family Rossman fold protein 0.41 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 71
Dickeya dianthicola ME23 0.44 DZA65_RS18910 TIGR00730 family Rossman fold protein 0.41 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Variovorax sp. OAS795 0.43 ABID97_RS14855 TIGR00730 family Rossman fold protein 0.47 ABID97_RS08250 RluA family pseudouridine synthase low > 91
Sphingomonas koreensis DSMZ 15582 0.43 Ga0059261_2416 TIGR00730 family protein 0.18 Ga0059261_1033 pseudouridine synthase, RluA family — —
Variovorax sp. SCN45 0.42 GFF1152 Lysine decarboxylase family 0.49 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) low > 127
Dinoroseobacter shibae DFL-12 0.40 Dshi_1767 hypothetical protein (RefSeq) 0.18 Dshi_0315 pseudouridine synthase, RluA family (RefSeq) low > 64
Azospirillum sp. SherDot2 0.38 MPMX19_06138 Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase 0.21 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C low > 112
Castellaniella sp019104865 MT123 0.36 ABCV34_RS10940 TIGR00730 family Rossman fold protein 0.47 ABCV34_RS08415 RluA family pseudouridine synthase low > 48
Phaeobacter inhibens DSM 17395 0.33 PGA1_c19080 TIGR00730 family protein 0.22 PGA1_c01950 ribosomal large subunit pseudouridine synthase C — —
Caulobacter crescentus NA1000 Δfur 0.29 CCNA_01372 lysine decarboxylase family 0.19 CCNA_02059 ribosomal large subunit pseudouridine synthase C low > 67
Caulobacter crescentus NA1000 0.29 CCNA_01372 lysine decarboxylase family 0.19 CCNA_02059 ribosomal large subunit pseudouridine synthase C low > 66

Not shown: 13 genomes with orthologs for HSERO_RS16435 only; 37 genomes with orthologs for HSERO_RS09415 only