Conservation of cofitness between HSERO_RS11215 and HSERO_RS08015 in Herbaspirillum seropedicae SmR1

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS11215 methionine sulfoxide reductase B 1.0 HSERO_RS08015 MerR family transcriptional regulator 0.31 10
Burkholderia phytofirmans PsJN 0.69 BPHYT_RS09545 peptide methionine sulfoxide reductase 0.55 BPHYT_RS06865 MerR family transcriptional regulator low > 109
Ralstonia sp. UNC404CL21Col 0.69 ABZR87_RS12635 peptide-methionine (R)-S-oxide reductase MsrB 0.52 ABZR87_RS04230 Cu(I)-responsive transcriptional regulator low > 80
Paraburkholderia bryophila 376MFSha3.1 0.68 H281DRAFT_00913 peptide-methionine (R)-S-oxide reductase 0.54 H281DRAFT_04982 transcriptional regulator, MerR family low > 103
Ralstonia solanacearum GMI1000 0.68 RS_RS08825 peptide-methionine (R)-S-oxide reductase 0.56 RS_RS16770 Cu(I)-responsive transcriptional regulator low > 80
Ralstonia solanacearum IBSBF1503 0.67 RALBFv3_RS01185 peptide-methionine (R)-S-oxide reductase 0.58 RALBFv3_RS08955 Cu(I)-responsive transcriptional regulator low > 76
Ralstonia solanacearum UW163 0.67 UW163_RS14495 peptide-methionine (R)-S-oxide reductase 0.58 UW163_RS04655 Cu(I)-responsive transcriptional regulator — —
Ralstonia solanacearum PSI07 0.66 RPSI07_RS16290 peptide-methionine (R)-S-oxide reductase 0.56 RPSI07_RS08315 Cu(I)-responsive transcriptional regulator 0.40 70
Agrobacterium fabrum C58 0.64 Atu0908 transcriptional regulator 0.47 Atu0938 transcriptional regulator, MerR family low > 89
Rhizobium sp. OAE497 0.64 ABIE40_RS04980 peptide-methionine (R)-S-oxide reductase MsrB 0.47 ABIE40_RS20305 Cu(I)-responsive transcriptional regulator low > 107
Magnetospirillum magneticum AMB-1 0.64 AMB_RS20830 peptide-methionine (R)-S-oxide reductase 0.50 AMB_RS09150 Cu(I)-responsive transcriptional regulator low > 64
Sinorhizobium meliloti 1021 0.62 SMc00117 hypothetical protein 0.55 SM_b21579 MerR family transcriptional regulator low > 103
Pseudomonas fluorescens FW300-N2E3 0.60 AO353_19155 peptide methionine sulfoxide reductase 0.52 AO353_06160 transcriptional regulator low > 101
Acinetobacter radioresistens SK82 0.60 MPMX26_01870 Peptide methionine sulfoxide reductase MsrB 0.46 MPMX26_01947 HTH-type transcriptional regulator HmrR — —
Dyella japonica UNC79MFTsu3.2 0.60 ABZR86_RS11250 peptide-methionine (R)-S-oxide reductase MsrB 0.36 ABZR86_RS01745 heavy metal-responsive transcriptional regulator low > 74
Pseudomonas fluorescens FW300-N2E2 0.60 Pf6N2E2_2445 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) 0.53 Pf6N2E2_3488 Cu(I)-responsive transcriptional regulator low > 103
Pseudomonas fluorescens FW300-N1B4 0.60 Pf1N1B4_260 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) 0.53 Pf1N1B4_1263 Cu(I)-responsive transcriptional regulator low > 87
Pseudomonas fluorescens FW300-N2C3 0.60 AO356_03085 peptide methionine sulfoxide reductase 0.53 AO356_08070 transcriptional regulator low > 104
Pseudomonas putida KT2440 0.59 PP_1873 Peptide methionine sulfoxide reductase MsrB 0.50 PP_0585 putative metal-sensitive transcriptional regulator, MerR family low > 96
Pseudomonas syringae pv. syringae B728a 0.59 Psyr_3614 Protein of unknown function DUF25 0.52 Psyr_0653 transcriptional regulator, MerR family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.59 Psyr_3614 Protein of unknown function DUF25 0.52 Psyr_0653 transcriptional regulator, MerR family low > 86
Variovorax sp. SCN45 0.59 GFF1329 Peptide-methionine (R)-S-oxide reductase MsrB (EC 1.8.4.12) 0.55 GFF3315 Cu(I)-responsive transcriptional regulator low > 127
Variovorax sp. OAS795 0.59 ABID97_RS15695 peptide-methionine (R)-S-oxide reductase MsrB 0.54 ABID97_RS02815 Cu(I)-responsive transcriptional regulator low > 91
Pseudomonas stutzeri RCH2 0.58 Psest_1773 methionine-R-sulfoxide reductase 0.51 Psest_0737 Cu(I)-responsive transcriptional regulator low > 67
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_2253 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) 0.53 PfGW456L13_25 Cu(I)-responsive transcriptional regulator low > 87
Pseudomonas sp. RS175 0.58 PFR28_00985 Peptide methionine sulfoxide reductase MsrB 0.54 PFR28_05243 HTH-type transcriptional regulator HmrR low > 88
Pseudomonas simiae WCS417 0.57 PS417_08565 peptide methionine sulfoxide reductase 0.53 PS417_03155 transcriptional regulator low > 88
Pseudomonas fluorescens SBW25-INTG 0.57 PFLU_RS08515 peptide-methionine (R)-S-oxide reductase MsrB 0.52 PFLU_RS03235 Cu(I)-responsive transcriptional regulator low > 109
Pseudomonas fluorescens SBW25 0.57 PFLU_RS08515 peptide-methionine (R)-S-oxide reductase MsrB 0.52 PFLU_RS03235 Cu(I)-responsive transcriptional regulator low > 109
Dinoroseobacter shibae DFL-12 0.56 Dshi_1706 methionine-R-sulfoxide reductase (RefSeq) 0.46 Dshi_1260 transcriptional regulator, MerR family (RefSeq) low > 64
Pseudomonas sp. S08-1 0.56 OH686_22580 Peptide-methionine (R)-S-oxide reductase MsrB 0.51 OH686_07400 Cu(I)-responsive transcriptional regulator low > 80
Shewanella sp. ANA-3 0.54 Shewana3_4333 methionine-R-sulfoxide reductase (RefSeq) 0.39 Shewana3_2762 MerR family transcriptional regulator (RefSeq) — —
Alteromonas macleodii MIT1002 0.54 MIT1002_02396 Peptide methionine sulfoxide reductase MsrB 0.25 MIT1002_02061 Mercuric resistance operon regulatory protein low > 70
Enterobacter asburiae PDN3 0.52 EX28DRAFT_1772 methionine-R-sulfoxide reductase 0.39 EX28DRAFT_2473 Cu(I)-responsive transcriptional regulator low > 76
Enterobacter sp. TBS_079 0.52 MPMX20_01845 Peptide methionine sulfoxide reductase MsrB 0.39 MPMX20_01085 HTH-type transcriptional regulator CueR low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_01954 Peptide methionine sulfoxide reductase MsrB 0.40 OHPLBJKB_03187 HTH-type transcriptional regulator CueR low > 73
Escherichia coli ECRC99 0.52 KEDOAH_01375 msrB Peptide methionine sulfoxide reductase MsrB 0.40 KEDOAH_19935 cueR Cu(I)-responsive transcriptional regulator — —
Escherichia coli ECOR38 0.52 HEPCGN_05125 msrB Peptide methionine sulfoxide reductase MsrB 0.40 HEPCGN_06670 cueR Cu(I)-responsive transcriptional regulator low > 87
Escherichia coli ECOR27 0.52 NOLOHH_17265 msrB Peptide methionine sulfoxide reductase MsrB 0.40 NOLOHH_01000 cueR Cu(I)-responsive transcriptional regulator low > 75
Escherichia coli ECRC62 0.52 BNILDI_16050 msrB Peptide methionine sulfoxide reductase MsrB 0.40 BNILDI_22420 cueR Cu(I)-responsive transcriptional regulator low > 75
Escherichia coli Nissle 1917 0.52 ECOLIN_RS09915 peptide-methionine (R)-S-oxide reductase MsrB 0.40 ECOLIN_RS02880 Cu(I)-responsive transcriptional regulator — —
Escherichia coli ECRC101 0.52 MCAODC_18675 msrB Peptide methionine sulfoxide reductase MsrB 0.40 MCAODC_27250 cueR Cu(I)-responsive transcriptional regulator low > 87
Escherichia coli BW25113 0.52 b1778 yeaA methionine sulfoxide reductase B (NCBI) 0.40 b0487 cueR DNA-binding transcriptional activator of copper-responsive regulon genes (NCBI) low > 76
Escherichia fergusonii Becca 0.52 EFB2_02216 Peptide methionine sulfoxide reductase MsrB 0.40 EFB2_03572 HTH-type transcriptional regulator CueR low > 86
Escherichia coli ECRC100 0.52 OKFHMN_26735 msrB Peptide methionine sulfoxide reductase MsrB 0.40 OKFHMN_08035 cueR Cu(I)-responsive transcriptional regulator low > 80
Escherichia coli ECRC98 0.52 JDDGAC_01310 msrB Peptide methionine sulfoxide reductase MsrB 0.40 JDDGAC_11680 cueR Cu(I)-responsive transcriptional regulator low > 86
Escherichia coli BL21 0.52 ECD_01747 methionine sulfoxide reductase B 0.40 ECD_00438 copper-responsive regulon transcriptional regulator low > 61
Escherichia coli ECRC102 0.52 NIAGMN_01330 msrB Peptide methionine sulfoxide reductase MsrB 0.40 NIAGMN_06085 cueR Cu(I)-responsive transcriptional regulator — —
Marinobacter adhaerens HP15 0.51 HP15_3127 methionine sulfoxide reductase B 0.31 HP15_89 transcriptional regulator, MerR family protein low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF3479 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) 0.57 GFF4249 Cu(I)-responsive transcriptional regulator low > 78
Bosea sp. OAE506 0.50 ABIE41_RS12740 peptide-methionine (R)-S-oxide reductase MsrB 0.53 ABIE41_RS15580 Cu(I)-responsive transcriptional regulator low > 77
Rahnella sp. WP5 0.50 EX31_RS06285 peptide-methionine (R)-S-oxide reductase MsrB 0.37 EX31_RS22580 Cu(I)-responsive transcriptional regulator low > 89
Vibrio cholerae E7946 ATCC 55056 0.49 CSW01_09970 peptide-methionine (R)-S-oxide reductase 0.34 CSW01_04975 transcriptional regulator low > 62
Klebsiella michiganensis M5al 0.49 BWI76_RS11515 peptide-methionine (R)-S-oxide reductase 0.40 BWI76_RS06910 transcriptional regulator low > 92
Erwinia tracheiphila SCR3 0.49 LU632_RS12990 msrB peptide-methionine (R)-S-oxide reductase MsrB 0.36 LU632_RS15290 cueR Cu(I)-responsive transcriptional regulator low > 74
Pantoea sp. MT58 0.48 IAI47_08950 peptide-methionine (R)-S-oxide reductase MsrB 0.34 IAI47_14395 Cu(I)-responsive transcriptional regulator low > 76
Pectobacterium carotovorum WPP14 0.48 HER17_RS11125 peptide-methionine (R)-S-oxide reductase MsrB 0.34 HER17_RS15620 Cu(I)-responsive transcriptional regulator low > 75
Mycobacterium tuberculosis H37Rv 0.48 Rv2674 Probable peptide methionine sulfoxide reductase MsrB (protein-methionine-R-oxide reductase) (peptide met(O) reductase) 0.25 Rv3334 Probable transcriptional regulatory protein (probably MerR-family) low > 58
Azospirillum brasilense Sp245 0.46 AZOBR_RS02680 methionine sulfoxide reductase B 0.57 AZOBR_RS19845 MerR family transcriptional regulator low > 97
Dickeya dianthicola ME23 0.45 DZA65_RS10755 peptide-methionine (R)-S-oxide reductase MsrB 0.37 DZA65_RS06230 Cu(I)-responsive transcriptional regulator low > 75
Dickeya dianthicola 67-19 0.45 HGI48_RS10280 peptide-methionine (R)-S-oxide reductase MsrB 0.37 HGI48_RS05895 Cu(I)-responsive transcriptional regulator low > 71
Dickeya dadantii 3937 0.44 DDA3937_RS10270 peptide-methionine (R)-S-oxide reductase MsrB 0.36 DDA3937_RS05850 Cu(I)-responsive transcriptional regulator low > 74
Azospirillum sp. SherDot2 0.44 MPMX19_06019 Peptide methionine sulfoxide reductase MsrB 0.56 MPMX19_04396 HTH-type transcriptional regulator HmrR low > 112
Caulobacter crescentus NA1000 Δfur 0.41 CCNA_02265 peptide methionine sulfoxide reductase msrB 0.25 CCNA_03178 MerR-family transcriptional regulator low > 67
Caulobacter crescentus NA1000 0.41 CCNA_02265 peptide methionine sulfoxide reductase msrB 0.25 CCNA_03178 MerR-family transcriptional regulator low > 66

Not shown: 11 genomes with orthologs for HSERO_RS11215 only; 12 genomes with orthologs for HSERO_RS08015 only