Conservation of cofitness between HSERO_RS00235 and HSERO_RS05395 in Herbaspirillum seropedicae SmR1

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS00235 MFS transporter 1.0 HSERO_RS05395 succinate-semialdehyde dehdyrogenase 0.38 16
Paraburkholderia sabiae LMG 24235 0.57 QEN71_RS32385 MFS transporter 0.80 QEN71_RS11690 NADP-dependent succinate-semialdehyde dehydrogenase low > 153
Rhizobium sp. OAE497 0.48 ABIE40_RS01535 MFS transporter 0.64 ABIE40_RS00140 NAD-dependent succinate-semialdehyde dehydrogenase low > 107
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_256 Permeases of the major facilitator superfamily 0.72 PfGW456L13_495 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) (from data) low > 87
Escherichia coli ECOR27 0.40 NOLOHH_18235 araJ MFS transporter 0.71 NOLOHH_12740 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_02130 Inner membrane transport protein YnfM 0.71 OHPLBJKB_01071 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD low > 73
Escherichia coli ECRC100 0.40 OKFHMN_27730 ynfM Inner membrane transport protein YnfM 0.71 OKFHMN_20915 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 80
Escherichia coli BW25113 0.40 b1596 ynfM predicted transporter (NCBI) 0.71 b2661 gabD succinate-semialdehyde dehydrogenase I, NADP-dependent (NCBI) low > 76
Escherichia coli ECRC102 0.40 NIAGMN_00345 ynfM Inner membrane transport protein YnfM 0.71 NIAGMN_18680 gabD NADP-dependent succinate-semialdehyde dehydrogenase — —
Escherichia coli BL21 0.40 ECD_01565 putative arabinose efflux transporter 0.71 ECD_02517 succinate-semialdehyde dehydrogenase I, NADP-dependent low > 61
Escherichia coli ECOR38 0.40 HEPCGN_06105 ynfM Inner membrane transport protein YnfM 0.71 HEPCGN_20150 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 87
Escherichia coli ECRC101 0.40 MCAODC_17680 ynfM Inner membrane transport protein YnfM 0.71 MCAODC_11435 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 87
Escherichia coli ECRC62 0.40 BNILDI_17025 ynfM Inner membrane transport protein YnfM 0.72 BNILDI_11300 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 75
Escherichia coli ECRC98 0.40 JDDGAC_02320 ynfM Inner membrane transport protein YnfM 0.71 JDDGAC_24575 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 86
Pseudomonas simiae WCS417 0.40 PS417_02015 membrane protein 0.72 PS417_00895 succinate-semialdehyde dehydrogenase low > 88
Escherichia fergusonii Becca 0.40 EFB2_02396 Inner membrane transport protein YnfM 0.69 EFB2_01269 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD low > 86
Escherichia coli ECRC99 0.40 KEDOAH_00375 araJ MFS transporter 0.71 KEDOAH_07225 gabD NADP-dependent succinate-semialdehyde dehydrogenase — —
Escherichia coli Nissle 1917 0.40 ECOLIN_RS08915 MFS transporter 0.69 ECOLIN_RS14840 NADP-dependent succinate-semialdehyde dehydrogenase low > 55
Enterobacter sp. TBS_079 0.40 MPMX20_02061 Inner membrane transport protein YnfM 0.54 MPMX20_04145 Glutarate-semialdehyde dehydrogenase low > 85
Pseudomonas fluorescens SBW25 0.40 PFLU_RS02060 MFS transporter 0.72 PFLU_RS00910 NADP-dependent succinate-semialdehyde dehydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.40 PFLU_RS02060 MFS transporter 0.72 PFLU_RS00910 NADP-dependent succinate-semialdehyde dehydrogenase low > 109
Serratia liquefaciens MT49 0.39 IAI46_11675 MFS transporter 0.65 IAI46_16465 NADP-dependent succinate-semialdehyde dehydrogenase low > 86
Pseudomonas putida KT2440 0.39 PP_5072 efflux transporter 0.73 PP_0213 succinate-semialdehyde dehydrogenase (NADP+) low > 96
Paraburkholderia graminis OAS925 0.39 ABIE53_000436 YNFM family putative membrane transporter 0.71 ABIE53_004119 succinate-semialdehyde dehydrogenase/glutarate-semialdehyde dehydrogenase low > 113
Pseudomonas fluorescens FW300-N2E3 0.39 AO353_12595 hypothetical protein 0.72 AO353_11505 succinate-semialdehyde dehydrogenase (EC 1.2.1.16) (from data) low > 101
Klebsiella michiganensis M5al 0.39 BWI76_RS15965 MFS transporter 0.72 BWI76_RS05620 NAD-dependent succinate-semialdehyde dehydrogenase low > 92
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_3736 Permeases of the major facilitator superfamily 0.72 Pf6N2E2_4014 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) low > 103
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_09295 hypothetical protein 0.72 AO356_10720 succinate-semialdehyde dehydrogenase low > 104
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_1531 Permeases of the major facilitator superfamily 0.72 Pf1N1B4_1734 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) low > 87
Ralstonia solanacearum GMI1000 0.39 RS_RS15415 MFS transporter 0.67 RS_RS00140 NAD-dependent succinate-semialdehyde dehydrogenase low > 80
Ralstonia solanacearum IBSBF1503 0.38 RALBFv3_RS07480 MFS transporter 0.69 RALBFv3_RS09540 NAD-dependent succinate-semialdehyde dehydrogenase low > 76
Pectobacterium carotovorum WPP14 0.38 HER17_RS10745 MFS transporter 0.65 HER17_RS09885 NAD-dependent succinate-semialdehyde dehydrogenase low > 75
Ralstonia solanacearum UW163 0.38 UW163_RS06140 MFS transporter 0.69 UW163_RS04040 NAD-dependent succinate-semialdehyde dehydrogenase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.38 GFF1787 Permeases of the major facilitator superfamily 0.71 GFF1566 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) low > 78
Pseudomonas sp. RS175 0.38 PFR28_05018 Inner membrane transport protein YnfM 0.72 PFR28_04755 Glutarate-semialdehyde dehydrogenase low > 88
Paraburkholderia bryophila 376MFSha3.1 0.38 H281DRAFT_02192 MFS transporter, YNFM family, putative membrane transport protein 0.75 H281DRAFT_03178 succinate semialdehyde dehydrogenase low > 103
Rahnella sp. WP5 0.38 EX31_RS16995 MFS transporter 0.57 EX31_RS12300 NAD-dependent succinate-semialdehyde dehydrogenase low > 89
Pantoea sp. MT58 0.38 IAI47_09740 MFS transporter 0.59 IAI47_07580 NAD-dependent succinate-semialdehyde dehydrogenase low > 76
Ralstonia solanacearum PSI07 0.38 RPSI07_RS09770 MFS transporter 0.68 RPSI07_RS23810 NAD-dependent succinate-semialdehyde dehydrogenase low > 81
Burkholderia phytofirmans PsJN 0.38 BPHYT_RS01705 MFS transporter 0.75 BPHYT_RS22430 succinate-semialdehyde dehydrogenase low > 109
Ralstonia sp. UNC404CL21Col 0.37 ABZR87_RS03160 MFS transporter 0.68 ABZR87_RS05195 NAD-dependent succinate-semialdehyde dehydrogenase low > 80
Enterobacter asburiae PDN3 0.37 EX28DRAFT_1495 Arabinose efflux permease 0.56 EX28DRAFT_3290 succinate-semialdehyde dehydrogenase low > 76
Azospirillum brasilense Sp245 0.37 AZOBR_RS10210 membrane protein 0.76 AZOBR_RS09720 succinate-semialdehyde dehdyrogenase low > 97
Pseudomonas syringae pv. syringae B728a ΔmexB 0.36 Psyr_0420 General substrate transporter:Major facilitator superfamily 0.73 Psyr_0091 succinate semialdehyde dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a 0.36 Psyr_0420 General substrate transporter:Major facilitator superfamily 0.73 Psyr_0091 succinate semialdehyde dehydrogenase low > 86
Pseudomonas stutzeri RCH2 0.35 Psest_3708 Arabinose efflux permease 0.72 Psest_4237 succinate-semialdehyde dehydrogenase low > 67
Azospirillum sp. SherDot2 0.35 MPMX19_01172 Inner membrane transport protein YnfM 0.70 MPMX19_04920 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD low > 112
Dickeya dianthicola 67-19 0.34 HGI48_RS10665 MFS transporter 0.66 HGI48_RS11855 NAD-dependent succinate-semialdehyde dehydrogenase low > 71
Dickeya dianthicola ME23 0.34 DZA65_RS11135 MFS transporter 0.66 DZA65_RS12400 NAD-dependent succinate-semialdehyde dehydrogenase low > 75
Dechlorosoma suillum PS 0.30 Dsui_2798 arabinose efflux permease family protein 0.69 Dsui_0437 succinate-semialdehyde dehydrogenase low > 51
Acinetobacter radioresistens SK82 0.30 MPMX26_00126 Inner membrane transport protein YnfM 0.64 MPMX26_01991 Glutarate-semialdehyde dehydrogenase — —
Vibrio cholerae E7946 ATCC 55056 0.22 CSW01_08135 MFS transporter 0.57 CSW01_08760 NAD-dependent succinate-semialdehyde dehydrogenase low > 62
Shewanella loihica PV-4 0.21 Shew_1441 major facilitator transporter (RefSeq) 0.57 Shew_3173 succinic semialdehyde dehydrogenase (RefSeq) 0.45 21
Shewanella oneidensis MR-1 0.18 SO1917 multidrug resistance protein, putative (NCBI ptt file) 0.68 SO1275 gabD succinate-semialdehyde dehydrogenase (NADP+) [EC: 1.2.1.16] (from data) 0.48 29
Shewanella amazonensis SB2B 0.18 Sama_2214 multidrug resistance protein, putative (RefSeq) 0.65 Sama_2637 succinate-semialdehyde dehydrogenase (NAD(P)(+)) (RefSeq) 0.47 22
Shewanella sp. ANA-3 0.17 Shewana3_1692 Xaa-His dipeptidase (RefSeq) 0.68 Shewana3_3092 succinate semialdehyde dehydrogenase (RefSeq) 0.74 4
Castellaniella sp019104865 MT123 0.15 ABCV34_RS01130 MFS transporter 0.78 ABCV34_RS09380 NADP-dependent succinate-semialdehyde dehydrogenase low > 48

Not shown: 6 genomes with orthologs for HSERO_RS00235 only; 27 genomes with orthologs for HSERO_RS05395 only