Conservation of cofitness between HSERO_RS15005 and HSERO_RS02620 in Herbaspirillum seropedicae SmR1

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS15005 ribosomal protein S12 methylthiotransferase 1.0 HSERO_RS02620 cobalt transporter 0.39 4
Cupriavidus basilensis FW507-4G11 0.79 RR42_RS07640 ribosomal protein S12 methylthiotransferase 0.63 RR42_RS30535 cobalt transporter low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.72 GFF4923 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.15 GFF1671 Cobalt-zinc-cadmium resistance protein low > 90
Variovorax sp. SCN45 0.71 GFF400 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase (EC 2.8.4.4) 0.16 GFF2069 Cobalt-zinc-cadmium resistance protein low > 127
Variovorax sp. OAS795 0.71 ABID97_RS17220 30S ribosomal protein S12 methylthiotransferase RimO 0.13 ABID97_RS24945 cation diffusion facilitator family transporter low > 91
Acidovorax sp. GW101-3H11 0.70 Ac3H11_364 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.16 Ac3H11_4676 Cobalt-zinc-cadmium resistance protein low > 79
Dechlorosoma suillum PS 0.67 Dsui_2540 ribosomal protein S12 methylthiotransferase RimO 0.16 Dsui_0813 cation diffusion facilitator family transporter low > 51
Klebsiella michiganensis M5al 0.66 BWI76_RS09115 30S ribosomal protein S12 methylthiotransferase RimO 0.59 BWI76_RS13865 cation diffusion facilitator family transporter low > 92
Enterobacter asburiae PDN3 0.66 EX28DRAFT_2131 ribosomal protein S12 methylthiotransferase RimO 0.53 EX28DRAFT_3666 cation diffusion facilitator family transporter low > 76
Enterobacter sp. TBS_079 0.66 MPMX20_01473 Ribosomal protein S12 methylthiotransferase RimO 0.17 MPMX20_04553 Ferrous-iron efflux pump FieF low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF731 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.17 GFF2282 Cobalt-zinc-cadmium resistance protein low > 78
Escherichia coli BW25113 0.65 b0835 yliG predicted SAM-dependent methyltransferase (NCBI) 0.17 b3915 fieF ferrous iron efflux protein F (NCBI) low > 76
Escherichia coli ECRC102 0.65 NIAGMN_04105 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.17 NIAGMN_11590 fieF CDF family cation-efflux transporter FieF — —
Escherichia coli ECOR38 0.65 HEPCGN_01970 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.17 HEPCGN_12480 fieF CDF family cation-efflux transporter FieF low > 87
Escherichia coli BL21 0.65 ECD_00802 ribosomal protein S12 methylthiotransferase 0.17 ECD_03800 ferrous iron and zinc transporter low > 61
Escherichia coli ECOR27 0.65 NOLOHH_22430 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.17 NOLOHH_05970 fieF CDF family cation-efflux transporter FieF low > 75
Escherichia coli ECRC98 0.65 JDDGAC_09695 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.17 JDDGAC_17460 fieF CDF family cation-efflux transporter FieF low > 86
Escherichia coli Nissle 1917 0.65 ECOLIN_RS04440 30S ribosomal protein S12 methylthiotransferase RimO 0.17 ECOLIN_RS22550 CDF family cation-efflux transporter FieF — —
Escherichia coli ECRC62 0.65 BNILDI_20690 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.17 BNILDI_05555 fieF CDF family cation-efflux transporter FieF low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_02875 Ribosomal protein S12 methylthiotransferase RimO 0.17 OHPLBJKB_04136 Ferrous-iron efflux pump FieF low > 73
Escherichia fergusonii Becca 0.65 EFB2_03271 Ribosomal protein S12 methylthiotransferase RimO 0.17 EFB2_04703 Ferrous-iron efflux pump FieF low > 86
Escherichia coli ECRC99 0.65 KEDOAH_21850 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.17 KEDOAH_14320 fieF CDF family cation-efflux transporter FieF — —
Escherichia coli ECRC101 0.65 MCAODC_25275 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.17 MCAODC_04335 fieF CDF family cation-efflux transporter FieF low > 87
Erwinia tracheiphila SCR3 0.65 LU632_RS09580 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.16 LU632_RS21845 fieF CDF family cation-efflux transporter FieF low > 74
Escherichia coli ECRC100 0.65 OKFHMN_06060 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.17 OKFHMN_13835 fieF CDF family cation-efflux transporter FieF low > 80
Pectobacterium carotovorum WPP14 0.65 HER17_RS12755 30S ribosomal protein S12 methylthiotransferase RimO 0.19 HER17_RS00720 CDF family cation-efflux transporter FieF low > 75
Dickeya dadantii 3937 0.64 DDA3937_RS09385 30S ribosomal protein S12 methylthiotransferase RimO 0.19 DDA3937_RS00840 CDF family cation-efflux transporter FieF low > 74
Dickeya dianthicola ME23 0.64 DZA65_RS09710 30S ribosomal protein S12 methylthiotransferase RimO 0.18 DZA65_RS21580 CDF family cation-efflux transporter FieF low > 75
Dickeya dianthicola 67-19 0.64 HGI48_RS09400 30S ribosomal protein S12 methylthiotransferase RimO 0.18 HGI48_RS20535 CDF family cation-efflux transporter FieF low > 71
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_13260 30S ribosomal protein S12 methylthiotransferase RimO 0.15 CSW01_13580 cation-efflux pump FieF low > 62
Pseudomonas sp. RS175 0.62 PFR28_00486 Ribosomal protein S12 methylthiotransferase RimO 0.17 PFR28_03835 Ferrous-iron efflux pump FieF low > 88
Castellaniella sp019104865 MT123 0.62 ABCV34_RS14230 30S ribosomal protein S12 methylthiotransferase RimO 0.55 ABCV34_RS08935 cation diffusion facilitator family transporter low > 48
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_1392 SSU ribosomal protein S12P methylthiotransferase 0.17 Psyr_4333 Cation efflux protein low > 86
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_1392 SSU ribosomal protein S12P methylthiotransferase 0.17 Psyr_4333 Cation efflux protein low > 86
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_16875 ribosomal protein S12 methylthiotransferase RimO 0.17 AO353_06310 ferrous iron transporter low > 101
Azospirillum sp. SherDot2 0.62 MPMX19_05761 Ribosomal protein S12 methylthiotransferase RimO 0.18 MPMX19_00714 Ferrous-iron efflux pump FieF low > 112
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_3160 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.18 Pf1N1B4_2726 Cobalt-zinc-cadmium resistance protein low > 87
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_4653 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.17 PfGW456L13_1393 Cobalt-zinc-cadmium resistance protein low > 87
Pseudomonas fluorescens SBW25 0.61 PFLU_RS05950 30S ribosomal protein S12 methylthiotransferase RimO 0.18 PFLU_RS26490 cation diffusion facilitator family transporter low > 109
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS05950 30S ribosomal protein S12 methylthiotransferase RimO 0.18 PFLU_RS26490 cation diffusion facilitator family transporter low > 109
Pseudomonas stutzeri RCH2 0.61 Psest_2632 ribosomal protein S12 methylthiotransferase RimO 0.17 Psest_0573 cation diffusion facilitator family transporter low > 67
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_2978 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.17 Pf6N2E2_5036 Cobalt-zinc-cadmium resistance protein low > 103
Pseudomonas fluorescens FW300-N2C3 0.61 AO356_05600 ribosomal protein S12 methylthiotransferase RimO 0.17 AO356_15475 ferrous iron transporter low > 104
Pseudomonas simiae WCS417 0.61 PS417_05880 ribosomal protein S12 methylthiotransferase 0.18 PS417_24560 ferrous iron transporter low > 88
Pseudomonas putida KT2440 0.61 PP_1197 ribosomal protein S12 methylthiotransferase 0.17 PP_4774 divalent cation efflux transporter low > 96
Pseudomonas sp. S08-1 0.61 OH686_18875 ribosomal protein S12 methylthiotransferase RimO 0.16 OH686_08810 Ferrous-iron efflux pump FieF low > 80
Shewanella sp. ANA-3 0.60 Shewana3_3627 MiaB-like tRNA modifying enzyme YliG (RefSeq) 0.18 Shewana3_0255 cation diffusion facilitator family transporter (RefSeq) low > 73
Shewanella amazonensis SB2B 0.60 Sama_0485 MiaB-like putative RNA modifying enzyme YliG (RefSeq) 0.17 Sama_3430 cation efflux family protein (RefSeq) low > 62
Shewanella oneidensis MR-1 0.60 SO4072 yliG MiaB-like putative RNA modifying enzyme YliG (NCBI ptt file) 0.18 SO4475 cation efflux family protein (NCBI ptt file) low > 76
Magnetospirillum magneticum AMB-1 0.58 AMB_RS15345 30S ribosomal protein S12 methylthiotransferase RimO 0.22 AMB_RS05165 cation transporter — —
Rhodospirillum rubrum S1H 0.58 Rru_A2811 hypothetical protein (NCBI) 0.20 Rru_A2628 Cation efflux protein (NCBI) low > 58
Sphingomonas koreensis DSMZ 15582 0.57 Ga0059261_0282 ribosomal protein S12 methylthiotransferase RimO 0.13 Ga0059261_1887 cation diffusion facilitator family transporter low > 68
Phaeobacter inhibens DSM 17395 0.55 PGA1_c24370 ribosomal protein S12 methylthiotransferase RimO 0.17 PGA1_c01130 putative cation efflux pump low > 62
Synechococcus elongatus PCC 7942 0.32 Synpcc7942_2512 hypothetical protein 0.21 Synpcc7942_1989 cation diffusion facilitator family transporter low > 38
Mucilaginibacter yixingensis YX-36 DSM 26809 0.31 ABZR88_RS15425 30S ribosomal protein S12 methylthiotransferase RimO 0.19 ABZR88_RS06065 cation diffusion facilitator family transporter low > 71
Echinicola vietnamensis KMM 6221, DSM 17526 0.30 Echvi_0564 ribosomal protein S12 methylthiotransferase RimO 0.19 Echvi_4463 cation diffusion facilitator family transporter low > 79
Pontibacter actiniarum KMM 6156, DSM 19842 0.30 CA264_15685 30S ribosomal protein S12 methylthiotransferase RimO 0.19 CA264_04200 cation-efflux pump low > 74
Phocaeicola vulgatus CL09T03C04 0.28 HMPREF1058_RS04095 30S ribosomal protein S12 methylthiotransferase RimO 0.29 HMPREF1058_RS10965 cation transporter low > 67
Bacteroides thetaiotaomicron VPI-5482 0.28 BT0913 putative Fe-S oxidoreductase (NCBI ptt file) 0.21 BT1141 cation efflux family protein (NCBI ptt file) low > 81
Phocaeicola dorei CL03T12C01 0.28 ABI39_RS17125 30S ribosomal protein S12 methylthiotransferase RimO 0.29 ABI39_RS06105 cation transporter low > 72
Bacteroides ovatus ATCC 8483 0.27 BACOVA_00737 ribosomal protein S12 methylthiotransferase RimO 0.21 BACOVA_03811 cation diffusion facilitator family transporter low > 94
Bacteroides stercoris CC31F 0.27 HMPREF1181_RS16335 30S ribosomal protein S12 methylthiotransferase RimO 0.30 HMPREF1181_RS01545 cation transporter low > 56
Parabacteroides merdae CL09T00C40 0.26 HMPREF1078_RS01815 30S ribosomal protein S12 methylthiotransferase RimO 0.28 HMPREF1078_RS02220 cation diffusion facilitator family transporter low > 61
Desulfovibrio vulgaris Hildenborough JW710 0.24 DVU3151 MiaB-like tRNA modifying enzyme YliG, TIGR01125 (TIGR) 0.12 DVU0164 cation efflux family protein (TIGR) low > 55

Not shown: 24 genomes with orthologs for HSERO_RS15005 only; 11 genomes with orthologs for HSERO_RS02620 only