| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS17670 | | LysR family transcriptional regulator | 1.0 | HSERO_RS02135 | | phosphomethylpyrimidine kinase | 0.32 | 5 |
| Burkholderia phytofirmans PsJN | 0.85 | BPHYT_RS21645 | | LysR family transcriptional regulator | 0.17 | BPHYT_RS12250 | | phosphomethylpyrimidine kinase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.67 | RR42_RS28515 | | LysR family transcriptional regulator | 0.15 | RR42_RS01370 | | phosphomethylpyrimidine kinase | — | — |
| Acidovorax sp. GW101-3H11 | 0.39 | Ac3H11_2888 | | Transcriptional regulator, LysR family | 0.21 | Ac3H11_1063 | | Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.38 | GFF5537 | | Transcriptional regulator, LysR family | 0.21 | GFF249 | | Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) | low | > 90 |
| Pseudomonas simiae WCS417 | 0.38 | PS417_18795 | | LysR family transcriptional regulator | 0.29 | PS417_24600 | | hydrogenase | 0.17 | 15 |
| Pseudomonas fluorescens SBW25 | 0.37 | PFLU_RS20860 | | LysR family transcriptional regulator | 0.29 | PFLU_RS26530 | | hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.37 | PFLU_RS20860 | | LysR family transcriptional regulator | 0.29 | PFLU_RS26530 | | hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | low | > 109 |
| Ralstonia solanacearum GMI1000 | 0.37 | RS_RS03085 | | LysR family transcriptional regulator | 0.19 | RS_RS00495 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Ralstonia solanacearum UW163 | 0.35 | UW163_RS18270 | | LysR family transcriptional regulator | 0.18 | UW163_RS03675 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.35 | RALBFv3_RS16915 | | LysR family transcriptional regulator | 0.18 | RALBFv3_RS09905 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Azospirillum brasilense Sp245 | 0.35 | AZOBR_RS00870 | | LysR family transcriptional regulator | 0.17 | AZOBR_RS07045 | | phosphomethylpyrimidine kinase | — | — |
| Rhizobium sp. OAE497 | 0.33 | ABIE40_RS11195 | | LysR family transcriptional regulator | 0.22 | ABIE40_RS25930 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 107 |
| Azospirillum sp. SherDot2 | 0.33 | MPMX19_00088 | | HTH-type transcriptional regulator HdfR | 0.19 | MPMX19_06182 | | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | — | — |
| Bosea sp. OAE506 | 0.33 | ABIE41_RS23080 | | LysR substrate-binding domain-containing protein | 0.20 | ABIE41_RS21620 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Pseudomonas stutzeri RCH2 | 0.33 | Psest_1630 | | Transcriptional regulator | 0.27 | Psest_0537 | | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | low | > 67 |
| Pseudomonas putida KT2440 | 0.32 | PP_1863 | | Transcriptional regulator, LysR family | 0.29 | PP_4782 | | Phosphomethylpyrimidine kinase | low | > 96 |
| Pseudomonas fluorescens GW456-L13 | 0.31 | PfGW456L13_2241 | | Transcriptional regulator, LysR family | 0.28 | PfGW456L13_1385 | | Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) | low | > 87 |
| Pseudomonas sp. S08-1 | 0.31 | OH686_22455 | | Transcriptional regulator, LysR family | 0.27 | OH686_09185 | | Hydroxymethylpyrimidine phosphate kinase ThiD | low | > 80 |
| Sinorhizobium meliloti 1021 | 0.31 | SMc04163 | | transcriptional regulator | 0.21 | SM_b20962 | | phoshomethylpyrimidine kinase | low | > 103 |
| Agrobacterium fabrum C58 | 0.30 | Atu1765 | | transcriptional regulator, LysR family | 0.21 | Atu3290 | | phosphomethylpyrimidine kinase | 0.28 | 66 |
| Pseudomonas fluorescens FW300-N2E2 | 0.30 | Pf6N2E2_2456 | | Transcriptional regulator, LysR family | 0.23 | Pf6N2E2_5024 | | Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.30 | AO356_03135 | | LysR family transcriptional regulator | 0.28 | AO356_15435 | | hydrogenase | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.30 | Pf1N1B4_272 | | Transcriptional regulator, LysR family | 0.23 | Pf1N1B4_2718 | | Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) | low | > 87 |
| Pseudomonas sp. RS175 | 0.30 | PFR28_00975 | | HTH-type transcriptional regulator HdfR | 0.26 | PFR28_03843 | | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.29 | AO353_19100 | | LysR family transcriptional regulator | 0.28 | AO353_06350 | | hydrogenase | low | > 101 |
| Rhodopseudomonas palustris CGA009 | 0.28 | TX73_013870 | | LysR substrate-binding domain-containing protein | 0.17 | TX73_020570 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.28 | Psyr_3624 | | transcriptional regulator, LysR family | 0.28 | Psyr_4340 | | phosphomethylpyrimidine kinase, putative | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.28 | Psyr_3624 | | transcriptional regulator, LysR family | 0.28 | Psyr_4340 | | phosphomethylpyrimidine kinase, putative | low | > 86 |
| Caulobacter crescentus NA1000 Δfur | 0.27 | CCNA_03625 | | transcriptional regulator CztR | 0.18 | CCNA_03331 | | phosphomethylpyrimidine kinase/hydroxymethylpyrimidine kinase | — | — |
| Caulobacter crescentus NA1000 | 0.27 | CCNA_03625 | | transcriptional regulator CztR | 0.18 | CCNA_03331 | | phosphomethylpyrimidine kinase/hydroxymethylpyrimidine kinase | — | — |
| Pantoea sp. MT58 | 0.27 | IAI47_18925 | | LysR family transcriptional regulator | 0.19 | IAI47_06810 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 76 |
| Phaeobacter inhibens DSM 17395 | 0.26 | PGA1_c21890 | | transcriptional regulator, LysR family | 0.15 | PGA1_c09030 | | phosphomethylpyrimidine kinase ThiD | low | > 62 |
| Serratia liquefaciens MT49 | 0.26 | IAI46_07280 | | LysR family transcriptional regulator | 0.20 | IAI46_19100 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 86 |
| Dinoroseobacter shibae DFL-12 | 0.25 | Dshi_2777 | | transcriptional regulator, LysR family (RefSeq) | 0.17 | Dshi_0915 | | phosphomethylpyrimidine kinase (RefSeq) | low | > 64 |
| Ralstonia sp. UNC404CL21Col | 0.25 | ABZR87_RS17245 | | LysR substrate-binding domain-containing protein | 0.19 | ABZR87_RS04830 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Erwinia tracheiphila SCR3 | 0.25 | LU632_RS07960 | lrhA | transcriptional regulator LrhA | 0.19 | LU632_RS08590 | thiD | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Dickeya dianthicola ME23 | 0.25 | DZA65_RS14990 | | transcriptional regulator LrhA | 0.18 | DZA65_RS16235 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 75 |
| Dickeya dianthicola 67-19 | 0.25 | HGI48_RS14315 | | transcriptional regulator LrhA | 0.18 | HGI48_RS15410 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 71 |
| Dickeya dadantii 3937 | 0.23 | DDA3937_RS14340 | | transcriptional regulator LrhA | 0.18 | DDA3937_RS15335 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.23 | ABZR86_RS17870 | | LysR family transcriptional regulator | 0.22 | ABZR86_RS00760 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Enterobacter sp. TBS_079 | 0.23 | MPMX20_03219 | | HTH-type transcriptional regulator HdfR | 0.19 | MPMX20_03076 | | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.23 | GFF1893 | | LysR family transcriptional regulator lrhA | 0.18 | GFF3834 | | Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) | low | > 78 |
| Klebsiella michiganensis M5al | 0.23 | BWI76_RS20200 | | transcriptional regulator LrhA | 0.18 | BWI76_RS19375 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 92 |
| Enterobacter asburiae PDN3 | 0.23 | EX28DRAFT_0320 | | Transcriptional regulator | 0.18 | EX28DRAFT_0469 | | hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 76 |
| Escherichia coli ECOR38 | 0.22 | HEPCGN_22035 | lrhA | transcriptional regulator LrhA | 0.19 | HEPCGN_02760 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 87 |
| Escherichia coli ECRC62 | 0.22 | BNILDI_13370 | lrhA | transcriptional regulator LrhA | 0.19 | BNILDI_14330 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 75 |
| Escherichia fergusonii Becca | 0.22 | EFB2_01569 | | HTH-type transcriptional regulator HdfR | 0.19 | EFB2_01754 | | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | low | > 86 |
| Escherichia coli ECOR27 | 0.22 | NOLOHH_14450 | lrhA | transcriptional regulator LrhA | 0.19 | NOLOHH_15415 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 75 |
| Escherichia coli BL21 | 0.22 | ECD_02214 | | transcriptional repressor of flagellar, motility and chemotaxis genes | 0.19 | ECD_02031 | | hydroxy-methylpyrimidine kinase and hydroxy-phosphomethylpyrimidine kinase | low | > 61 |
| Escherichia coli ECRC100 | 0.22 | OKFHMN_22830 | lrhA | transcriptional regulator LrhA | 0.19 | OKFHMN_24075 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | 0.86 | 14 |
| Escherichia coli ECRC102 | 0.22 | NIAGMN_20600 | lrhA | transcriptional regulator LrhA | 0.19 | NIAGMN_22020 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Escherichia coli ECRC99 | 0.22 | KEDOAH_05365 | lrhA | transcriptional regulator LrhA | 0.19 | KEDOAH_04075 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.22 | OHPLBJKB_01416 | | HTH-type transcriptional regulator HdfR | 0.19 | OHPLBJKB_01607 | | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | low | > 73 |
| Escherichia coli BW25113 | 0.22 | b2289 | lrhA | DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes (NCBI) | 0.19 | b2103 | thiD | phosphomethylpyrimidine kinase (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 0.22 | MCAODC_13870 | lrhA | transcriptional regulator LrhA | 0.19 | MCAODC_21085 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 87 |
| Escherichia coli ECRC98 | 0.22 | JDDGAC_26795 | lrhA | transcriptional regulator LrhA | 0.19 | JDDGAC_28185 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 86 |
| Sphingomonas koreensis DSMZ 15582 | 0.22 | Ga0059261_3000 | | Transcriptional regulator | 0.18 | Ga0059261_1961 | | hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Rahnella sp. WP5 | 0.22 | EX31_RS19440 | | transcriptional regulator LrhA | 0.20 | EX31_RS20390 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 89 |
| Variovorax sp. OAS795 | 0.21 | ABID97_RS22410 | | LysR substrate-binding domain-containing protein | 0.18 | ABID97_RS15330 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Escherichia coli Nissle 1917 | 0.21 | ECOLIN_RS13290 | | transcriptional regulator LrhA | 0.19 | ECOLIN_RS12335 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
Not shown: 9 genomes with orthologs for HSERO_RS17670 only; 27 genomes with orthologs for HSERO_RS02135 only