Conservation of cofitness between HGI48_RS18515 and HGI48_RS01375 in Dickeya dianthicola 67-19

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola 67-19 1.0 HGI48_RS18515 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 1.0 HGI48_RS01375 AsmA2 domain-containing protein YhdP 0.65 15
Dickeya dianthicola ME23 0.99 DZA65_RS19650 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.99 DZA65_RS01435 AsmA2 domain-containing protein low > 75
Dickeya dadantii 3937 0.97 DDA3937_RS18580 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.95 DDA3937_RS01455 AsmA2 domain-containing protein YhdP low > 74
Pectobacterium carotovorum WPP14 0.88 HER17_RS02615 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.68 HER17_RS20145 AsmA2 domain-containing protein YhdP low > 75
Serratia liquefaciens MT49 0.85 IAI46_01800 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.59 IAI46_22695 AsmA2 domain-containing protein YhdP low > 86
Klebsiella michiganensis M5al 0.84 BWI76_RS02820 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.51 BWI76_RS25475 TIGR02099 family protein low > 92
Enterobacter sp. TBS_079 0.83 MPMX20_00515 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.51 MPMX20_04152 hypothetical protein low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.83 GFF881 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.50 GFF2139 FIG005080: Possible exported protein low > 78
Escherichia coli BL21 0.83 ECD_04101 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.51 ECD_03105 DUF3971-AsmA2 domains protein low > 61
Escherichia coli ECOR27 0.83 NOLOHH_04200 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.50 NOLOHH_09535 yhdP AsmA2 domain-containing protein YhdP low > 75
Escherichia coli ECRC99 0.83 KEDOAH_16215 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.51 KEDOAH_10400 yhdP AsmA2 domain-containing protein YhdP — —
Escherichia coli ECRC101 0.83 MCAODC_02445 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.51 MCAODC_08270 yhdP AsmA2 domain-containing protein YhdP low > 87
Escherichia coli ECRC62 0.83 BNILDI_07315 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.50 BNILDI_01985 yhdP AsmA2 domain-containing protein YhdP low > 75
Escherichia coli ECRC100 0.83 OKFHMN_11940 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.51 OKFHMN_17750 yhdP AsmA2 domain-containing protein YhdP low > 80
Escherichia coli ECRC98 0.83 JDDGAC_15580 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.51 JDDGAC_21375 yhdP AsmA2 domain-containing protein YhdP low > 86
Escherichia coli ECOR38 0.83 HEPCGN_10140 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.51 HEPCGN_16615 yhdP AsmA2 domain-containing protein YhdP 0.78 41
Escherichia fergusonii Becca 0.83 EFB2_04300 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.51 EFB2_00585 hypothetical protein low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.83 OHPLBJKB_03802 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.51 OHPLBJKB_00459 hypothetical protein low > 73
Escherichia coli ECRC102 0.83 NIAGMN_09790 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.51 NIAGMN_15510 yhdP AsmA2 domain-containing protein YhdP — —
Enterobacter asburiae PDN3 0.83 EX28DRAFT_3420 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.51 EX28DRAFT_3296 TIGR02099 family protein low > 76
Escherichia coli Nissle 1917 0.83 ECOLIN_RS24560 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.51 ECOLIN_RS18600 AsmA2 domain-containing protein YhdP 0.80 11
Escherichia coli BW25113 0.83 b4233 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) 0.51 b4472 yhdP conserved membrane protein, predicted transporter (NCBI) low > 76
Rahnella sp. WP5 0.82 EX31_RS08665 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.57 EX31_RS12260 AsmA2 domain-containing protein low > 89
Pantoea sp. MT58 0.80 IAI47_02755 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.54 IAI47_02460 AsmA2 domain-containing protein YhdP low > 76
Erwinia tracheiphila SCR3 0.78 LU632_RS02135 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.52 LU632_RS21425 yhdP AsmA2 domain-containing protein YhdP low > 74
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_12875 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.20 CSW01_02210 DUF3971 domain-containing protein low > 62
Shewanella sp. ANA-3 0.61 Shewana3_0791 UDP-N-acetylmuramate (RefSeq) 0.14 Shewana3_3643 hypothetical protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.61 SO3805 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (NCBI ptt file) 0.13 SO4093 conserved hypothetical protein (NCBI ptt file) 0.36 23
Shewanella loihica PV-4 0.60 Shew_3144 UDP-N-acetylmuramate (RefSeq) 0.14 Shew_0408 hypothetical protein (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.59 MIT1002_00168 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.14 MIT1002_00225 putative protein involved in outer membrane biogenesis low > 70
Pseudomonas simiae WCS417 0.58 PS417_24800 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.09 PS417_04275 hypothetical protein low > 88
Pseudomonas fluorescens SBW25 0.57 PFLU_RS26735 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.08 PFLU_RS04330 TIGR02099 family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.57 PFLU_RS26735 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.08 PFLU_RS04330 TIGR02099 family protein low > 109
Pseudomonas fluorescens FW300-N2E3 0.57 AO353_06550 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.09 AO353_05225 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N2C3 0.57 AO356_15235 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.08 AO356_07105 hypothetical protein low > 104
Pseudomonas sp. RS175 0.57 PFR28_03883 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.08 PFR28_00159 hypothetical protein low > 88
Pseudomonas fluorescens GW456-L13 0.56 PfGW456L13_1344 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.09 PfGW456L13_5028 FIG005080: Possible exported protein low > 87
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS01630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.07 ABZR87_RS01095 YhdP family protein low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_0630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.10 Psyr_4158 conserved hypothetical protein low > 86
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_0630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.10 Psyr_4158 conserved hypothetical protein low > 86
Pseudomonas fluorescens FW300-N1B4 0.56 Pf1N1B4_2676 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.08 Pf1N1B4_1094 FIG005080: Possible exported protein — —
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_4982 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.08 Pf6N2E2_3282 FIG005080: Possible exported protein low > 103
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS01965 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.08 HSERO_RS07145 hypothetical protein low > 78
Pseudomonas stutzeri RCH2 0.55 Psest_0673 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.08 Psest_3322 TIGR02099 family protein low > 67
Burkholderia phytofirmans PsJN 0.54 BPHYT_RS16990 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.05 BPHYT_RS03550 hypothetical protein low > 109
Dechlorosoma suillum PS 0.54 Dsui_0384 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.10 Dsui_3403 TIGR02099 family protein — —
Pseudomonas sp. S08-1 0.54 OH686_09400 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.09 OH686_08590 Possible exported protein — —
Marinobacter adhaerens HP15 0.51 HP15_616 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.06 HP15_2450 conserved hypothetical protein low > 73
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS17365 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.09 ABZR86_RS21725 YhdP family protein low > 74
Variovorax sp. SCN45 0.50 GFF4445 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase (EC 6.3.2.-) 0.06 GFF5444 FIG005080: Possible exported protein low > 127
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_17020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase 0.08 OKGIIK_10285 TIGR02099 family protein — —
Variovorax sp. OAS795 0.48 ABID97_RS06355 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.05 ABID97_RS02005 YhdP family protein low > 91
Rhodanobacter denitrificans MT42 0.48 LRK55_RS06355 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.08 LRK55_RS03150 YhdP family protein — —
Rhodanobacter denitrificans FW104-10B01 0.48 LRK54_RS06610 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.08 LRK54_RS03400 TIGR02099 family protein — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.47 GFF583 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.08 GFF2534 FIG005080: Possible exported protein — —
Xanthomonas campestris pv. campestris strain 8004 0.46 Xcc-8004.1107.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) 0.04 Xcc-8004.1881.1 FIG005080: Possible exported protein 0.42 72
Lysobacter sp. OAE881 0.43 ABIE51_RS17450 Mur ligase family protein 0.08 ABIE51_RS06790 YhdP family protein low > 62
Acidovorax sp. GW101-3H11 0.43 Ac3H11_4032 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.06 Ac3H11_1208 FIG005080: Possible exported protein low > 79

Not shown: 17 genomes with orthologs for HGI48_RS18515 only; 0 genomes with orthologs for HGI48_RS01375 only