Conservation of cofitness between HER17_RS19160 and HER17_RS15635 in Pectobacterium carotovorum WPP14

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS19160 TIGR00645 family protein 1.0 HER17_RS15635 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.51 13
Erwinia tracheiphila SCR3 0.84 LU632_RS00860 TIGR00645 family protein 0.64 LU632_RS15310 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 74
Klebsiella michiganensis M5al 0.83 BWI76_RS24270 membrane protein 0.79 BWI76_RS06870 aminoacyl-tRNA deacylase low > 92
Enterobacter sp. TBS_079 0.83 MPMX20_03846 hypothetical protein 0.76 MPMX20_01082 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 85
Enterobacter asburiae PDN3 0.83 EX28DRAFT_3040 TIGR00645 family protein 0.77 EX28DRAFT_2477 Cys-tRNA(Pro) deacylase low > 76
Serratia liquefaciens MT49 0.81 IAI46_12210 TIGR00645 family protein 0.81 IAI46_05300 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 86
Pantoea sp. MT58 0.81 IAI47_01255 TIGR00645 family protein 0.76 IAI47_14410 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.81 GFF3112 Putative membrane protein 0.78 GFF4401 Cys-tRNA(Pro) deacylase YbaK low > 78
Escherichia fergusonii Becca 0.80 EFB2_00806 hypothetical protein 0.77 EFB2_03577 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 86
Escherichia coli ECRC62 0.80 BNILDI_00755 yqhA UPF0114 protein YqhA 0.77 BNILDI_22455 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 75
Escherichia coli ECOR38 0.80 HEPCGN_17845 yqhA UPF0114 protein YqhA 0.77 HEPCGN_06725 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 87
Escherichia coli ECOR27 0.80 NOLOHH_10760 yqhA UPF0114 protein YqhA 0.77 NOLOHH_01035 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 75
Escherichia coli ECRC99 0.80 KEDOAH_09160 yqhA UPF0114 protein YqhA 0.76 KEDOAH_19865 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK — —
Escherichia coli ECRC102 0.80 NIAGMN_16750 yqhA UPF0114 protein YqhA 0.76 NIAGMN_06155 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK — —
Escherichia coli ECRC98 0.80 JDDGAC_22620 yqhA UPF0114 protein YqhA 0.76 JDDGAC_11750 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 86
Escherichia coli BL21 0.80 ECD_02877 UPF0114 family putative inner membrane protein 0.77 ECD_00432 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase low > 61
Escherichia coli ECRC100 0.80 OKFHMN_18985 yqhA UPF0114 protein YqhA 0.76 OKFHMN_08105 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 80
Escherichia coli BW25113 0.80 b3002 yqhA hypothetical protein (NCBI) 0.77 b0481 ybaK hypothetical protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.80 OHPLBJKB_00697 hypothetical protein 0.77 OHPLBJKB_03193 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 73
Escherichia coli Nissle 1917 0.80 ECOLIN_RS17290 TIGR00645 family protein 0.77 ECOLIN_RS02850 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK — —
Escherichia coli ECRC101 0.80 MCAODC_09500 yqhA UPF0114 protein YqhA 0.76 MCAODC_27325 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 87
Dickeya dadantii 3937 0.79 DDA3937_RS04680 TIGR00645 family protein 0.79 DDA3937_RS05835 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 74
Dickeya dianthicola 67-19 0.78 HGI48_RS04635 TIGR00645 family protein 0.70 HGI48_RS05880 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 71
Dickeya dianthicola ME23 0.78 DZA65_RS04555 TIGR00645 family protein 0.70 DZA65_RS06215 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 75
Pseudomonas sp. S08-1 0.74 OH686_16270 Putative inner membrane protein 0.54 OH686_20370 Cys-tRNA(Pro) deacylase YbaK low > 80
Pseudomonas syringae pv. syringae B728a 0.73 Psyr_4257 Uncharacterized protein UPF0114 0.52 Psyr_3903 Conserved hypothetical protein 11 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.73 Psyr_4257 Uncharacterized protein UPF0114 0.52 Psyr_3903 Conserved hypothetical protein 11 low > 86
Pseudomonas fluorescens FW300-N2E3 0.73 AO353_14070 hypothetical protein 0.51 AO353_04170 hypothetical protein low > 101
Pseudomonas stutzeri RCH2 0.72 Psest_3394 TIGR00645 family protein 0.50 Psest_1454 ybaK/ebsC protein low > 67
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_5095 Putative inner membrane protein (Fragment) 0.49 Pf6N2E2_5576 Cys-tRNA(Pro) deacylase YbaK low > 103
Pseudomonas sp. RS175 0.72 PFR28_03777 hypothetical protein 0.48 PFR28_03366 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 88
Pseudomonas putida KT2440 0.72 PP_0682 conserved inner membrane protein of unknown function, UPF0114 family 0.52 PP_1077 Cys-tRNAPro deacylase low > 96
Pseudomonas fluorescens GW456-L13 0.72 PfGW456L13_1462 Putative inner membrane protein (Fragment) 0.50 PfGW456L13_1736 Cys-tRNA(Pro) deacylase YbaK low > 87
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_2791 Putative inner membrane protein (Fragment) 0.50 Pf1N1B4_765 Cys-tRNA(Pro) deacylase YbaK low > 87
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_15775 hypothetical protein 0.49 AO356_18260 hypothetical protein low > 104
Pseudomonas simiae WCS417 0.70 PS417_24215 hypothetical protein 0.50 PS417_05585 hypothetical protein — —
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS26135 TIGR00645 family protein 0.50 PFLU_RS05670 Cys-tRNA(Pro) deacylase 0.15 21
Pseudomonas fluorescens SBW25 0.70 PFLU_RS26135 TIGR00645 family protein 0.50 PFLU_RS05670 Cys-tRNA(Pro) deacylase low > 109
Shewanella oneidensis MR-1 0.69 SO3997 conserved hypothetical protein TIGR00645 (NCBI ptt file) 0.53 SO1124 conserved hypothetical protein TIGR00011 (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.69 Shewana3_0644 hypothetical protein (RefSeq) 0.51 Shewana3_0957 ybaK/ebsC protein (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_01105 hypothetical protein 0.51 CSW01_10815 Cys-tRNA(Pro) deacylase low > 62
Azospirillum sp. SherDot2 0.52 MPMX19_01767 hypothetical protein 0.37 MPMX19_02507 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 112
Azospirillum brasilense Sp245 0.50 AZOBR_RS06580 hypothetical protein 0.34 AZOBR_RS00470 hypothetical protein low > 97
Agrobacterium fabrum C58 0.47 Atu2286 hypothetical protein 0.32 Atu0275 hypothetical protein — —
Rhodospirillum rubrum S1H 0.46 Rru_A3669 Uncharacterized protein UPF0114 (NCBI) 0.32 Rru_A3668 hypothetical protein (NCBI) low > 58
Rhizobium sp. OAE497 0.44 ABIE40_RS13435 TIGR00645 family protein 0.34 ABIE40_RS01230 Cys-tRNA(Pro) deacylase low > 107
Caulobacter crescentus NA1000 0.41 CCNA_01088 hypothetical protein 0.35 CCNA_01014 cysteinyl-tRNA(Pro) deacylase low > 66
Caulobacter crescentus NA1000 Δfur 0.41 CCNA_01088 hypothetical protein 0.35 CCNA_01014 cysteinyl-tRNA(Pro) deacylase low > 67
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS23775 TIGR00645 family protein 0.28 QEN71_RS02765 Cys-tRNA(Pro) deacylase low > 153
Rhodopseudomonas palustris CGA009 0.39 TX73_001195 TIGR00645 family protein 0.31 TX73_022270 Cys-tRNA(Pro) deacylase low > 86
Dechlorosoma suillum PS 0.39 Dsui_2002 TIGR00645 family protein 0.25 Dsui_1216 ybaK/ebsC protein low > 51
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS06990 membrane protein 0.27 BPHYT_RS15940 membrane protein low > 109
Paraburkholderia graminis OAS925 0.38 ABIE53_001663 uncharacterized protein (TIGR00645 family) 0.27 ABIE53_003359 Cys-tRNA(Pro) deacylase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.38 H281DRAFT_04955 TIGR00645 family protein 0.26 H281DRAFT_04124 Cys-tRNA(Pro) deacylase — —
Ralstonia solanacearum GMI1000 0.38 RS_RS09825 membrane protein 0.25 RS_RS12760 Cys-tRNA(Pro) deacylase low > 80
Ralstonia solanacearum IBSBF1503 0.38 RALBFv3_RS02455 membrane protein 0.26 RALBFv3_RS05145 Cys-tRNA(Pro) deacylase low > 76
Ralstonia solanacearum PSI07 0.38 RPSI07_RS14870 membrane protein 0.26 RPSI07_RS12155 Cys-tRNA(Pro) deacylase low > 81
Ralstonia sp. UNC404CL21Col 0.38 ABZR87_RS14370 TIGR00645 family protein 0.27 ABZR87_RS00800 Cys-tRNA(Pro) deacylase low > 80
Ralstonia solanacearum UW163 0.38 UW163_RS11270 membrane protein 0.26 UW163_RS08480 Cys-tRNA(Pro) deacylase — —
Variovorax sp. SCN45 0.34 GFF476 InterPro IPR005134 COGs COG2862 0.25 GFF3103 Cys-tRNA(Pro) deacylase YbaK low > 127
Variovorax sp. OAS795 0.34 ABID97_RS17530 YqhA family protein 0.27 ABID97_RS21705 aminoacyl-tRNA deacylase low > 91
Acidovorax sp. GW101-3H11 0.33 Ac3H11_950 putative membrane protein 0.26 Ac3H11_2624 Transcriptional regulator low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF4106 putative membrane protein 0.23 GFF288 Transcriptional regulator — —
Herbaspirillum seropedicae SmR1 0.30 HSERO_RS07765 membrane protein 0.27 HSERO_RS04270 membrane protein low > 78

Not shown: 4 genomes with orthologs for HER17_RS19160 only; 21 genomes with orthologs for HER17_RS15635 only