Conservation of cofitness between HER17_RS15710 and HER17_RS11700 in Pectobacterium carotovorum WPP14

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS15710 adenine phosphoribosyltransferase 1.0 HER17_RS11700 GAF domain-containing protein 0.66 6
Dickeya dianthicola ME23 0.87 DZA65_RS06150 adenine phosphoribosyltransferase 0.81 DZA65_RS12515 GAF domain-containing protein 0.35 42
Dickeya dadantii 3937 0.86 DDA3937_RS05775 adenine phosphoribosyltransferase 0.79 DDA3937_RS11975 GAF domain-containing protein low > 74
Dickeya dianthicola 67-19 0.86 HGI48_RS05825 adenine phosphoribosyltransferase 0.80 HGI48_RS12065 GAF domain-containing protein low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.82 GFF4387 Adenine phosphoribosyltransferase (EC 2.4.2.7) 0.62 GFF2847 Free methionine-(R)-sulfoxide reductase, contains GAF domain low > 78
Enterobacter sp. TBS_079 0.80 MPMX20_01071 Adenine phosphoribosyltransferase 0.66 MPMX20_02739 Free methionine-R-sulfoxide reductase low > 85
Klebsiella michiganensis M5al 0.80 BWI76_RS06815 adenine phosphoribosyltransferase 0.65 BWI76_RS17985 hypothetical protein low > 92
Serratia liquefaciens MT49 0.80 IAI46_05225 adenine phosphoribosyltransferase 0.69 IAI46_10790 GAF domain-containing protein low > 86
Escherichia coli ECRC62 0.80 BNILDI_22520 apt adenine phosphoribosyltransferase 0.65 BNILDI_15760 msrC L-methionine (R)-S-oxide reductase low > 75
Escherichia coli BW25113 0.80 b0469 apt adenine phosphoribosyltransferase (NCBI) 0.64 b1832 yebR free methionine-(R)-sulfoxide reductase (RefSeq) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.80 OHPLBJKB_03205 Adenine phosphoribosyltransferase 0.65 OHPLBJKB_01899 Free methionine-R-sulfoxide reductase low > 73
Escherichia coli ECOR38 0.80 HEPCGN_06785 apt adenine phosphoribosyltransferase 0.65 HEPCGN_04855 msrC L-methionine (R)-S-oxide reductase low > 87
Escherichia coli BL21 0.80 ECD_00420 adenine phosphoribosyltransferase 0.65 ECD_01803 free methionine-(R)-sulfoxide reductase low > 61
Escherichia fergusonii Becca 0.80 EFB2_03589 Adenine phosphoribosyltransferase 0.65 EFB2_02169 Free methionine-R-sulfoxide reductase low > 86
Escherichia coli ECOR27 0.80 NOLOHH_01100 apt adenine phosphoribosyltransferase 0.65 NOLOHH_16965 msrC L-methionine (R)-S-oxide reductase low > 75
Escherichia coli ECRC99 0.79 KEDOAH_19795 apt adenine phosphoribosyltransferase 0.65 KEDOAH_01650 msrC L-methionine (R)-S-oxide reductase — —
Enterobacter asburiae PDN3 0.79 EX28DRAFT_2489 adenine phosphoribosyltransferase (EC 2.4.2.7) 0.66 EX28DRAFT_0724 GAF domain-containing protein low > 76
Escherichia coli ECRC102 0.79 NIAGMN_06225 apt adenine phosphoribosyltransferase 0.65 NIAGMN_01605 msrC L-methionine (R)-S-oxide reductase — —
Escherichia coli ECRC101 0.79 MCAODC_27395 apt adenine phosphoribosyltransferase 0.65 MCAODC_18950 msrC L-methionine (R)-S-oxide reductase low > 87
Escherichia coli ECRC98 0.79 JDDGAC_11820 apt adenine phosphoribosyltransferase 0.65 JDDGAC_01030 msrC L-methionine (R)-S-oxide reductase low > 86
Escherichia coli ECRC100 0.79 OKFHMN_08170 apt adenine phosphoribosyltransferase 0.65 OKFHMN_26455 msrC L-methionine (R)-S-oxide reductase low > 80
Rahnella sp. WP5 0.78 EX31_RS22505 adenine phosphoribosyltransferase 0.73 EX31_RS24870 GAF domain-containing protein low > 89
Erwinia tracheiphila SCR3 0.76 LU632_RS18140 apt adenine phosphoribosyltransferase 0.68 LU632_RS13260 GAF domain-containing protein low > 74
Pantoea sp. MT58 0.74 IAI47_14480 adenine phosphoribosyltransferase 0.67 IAI47_08695 GAF domain-containing protein low > 76
Shewanella loihica PV-4 0.72 Shew_2236 adenine phosphoribosyltransferase (RefSeq) 0.51 Shew_1800 putative GAF sensor protein (RefSeq) low > 60
Shewanella amazonensis SB2B 0.70 Sama_1309 adenine phosphoribosyltransferase (RefSeq) 0.49 Sama_1583 GAF domain-containing protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.70 Shewana3_2447 adenine phosphoribosyltransferase (RefSeq) 0.48 Shewana3_1776 putative GAF sensor protein (RefSeq) 0.53 38
Shewanella oneidensis MR-1 0.69 SO2012 apt adenine phosphoribosyltransferase (NCBI ptt file) 0.48 SO2603 conserved hypothetical protein (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.65 MIT1002_02655 Adenine phosphoribosyltransferase 0.50 MIT1002_02022 Free methionine-R-sulfoxide reductase low > 70
Rhizobium sp. OAE497 0.49 ABIE40_RS13115 adenine phosphoribosyltransferase 0.50 ABIE40_RS12595 GAF domain-containing protein low > 107
Phaeobacter inhibens DSM 17395 0.48 PGA1_c06370 adenine phosphoribosyltransferase Apt 0.28 PGA1_c33170 putative sensor protein low > 62
Sphingomonas koreensis DSMZ 15582 0.48 Ga0059261_3222 adenine phosphoribosyltransferase (EC 2.4.2.7) 0.45 Ga0059261_3708 GAF domain-containing protein low > 68
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS01790 adenine phosphoribosyltransferase 0.46 QEN71_RS15555 GAF domain-containing protein low > 153
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS02940 adenine phosphoribosyltransferase 0.45 BPHYT_RS06285 diguanylate cyclase low > 109
Castellaniella sp019104865 MT123 0.45 ABCV34_RS14375 adenine phosphoribosyltransferase 0.42 ABCV34_RS14700 GAF domain-containing protein low > 48
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_01920 adenine phosphoribosyltransferase 0.47 H281DRAFT_00323 GAF domain-containing protein low > 103
Bacteroides stercoris CC31F 0.44 HMPREF1181_RS02100 adenine phosphoribosyltransferase 0.32 HMPREF1181_RS06240 GAF domain-containing protein low > 56
Pseudomonas sp. S08-1 0.44 OH686_02250 adenine phosphoribosyltransferase 0.49 OH686_22605 Free methionine-(R)-sulfoxide reductase, contains GAF domain low > 80
Paraburkholderia graminis OAS925 0.43 ABIE53_000725 adenine phosphoribosyltransferase 0.44 ABIE53_001450 L-methionine (R)-S-oxide reductase — —
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_00665 adenine phosphoribosyltransferase 0.49 AO353_19180 GAF domain-containing protein low > 101
Bacteroides ovatus ATCC 8483 0.43 BACOVA_01366 adenine phosphoribosyltransferase 0.37 BACOVA_04543 GAF domain protein low > 94
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_3866 Adenine phosphoribosyltransferase (EC 2.4.2.7) 0.49 Pf1N1B4_255 Free methionine-(R)-sulfoxide reductase, contains GAF domain low > 87
Pseudomonas simiae WCS417 0.43 PS417_20790 adenine phosphoribosyltransferase 0.48 PS417_08590 hypothetical protein low > 88
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_4072 Adenine phosphoribosyltransferase (EC 2.4.2.7) 0.49 PfGW456L13_2258 Free methionine-(R)-sulfoxide reductase, contains GAF domain low > 87
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS19335 adenine phosphoribosyltransferase 0.44 ABZR86_RS12705 GAF domain-containing protein low > 74
Pseudomonas fluorescens SBW25 0.42 PFLU_RS22400 adenine phosphoribosyltransferase 0.48 PFLU_RS08545 GAF domain-containing protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS22400 adenine phosphoribosyltransferase 0.48 PFLU_RS08545 GAF domain-containing protein low > 109
Pseudomonas fluorescens FW300-N2C3 0.42 AO356_02490 adenine phosphoribosyltransferase 0.47 AO356_03060 GAF domain-containing protein low > 104
Pseudomonas sp. RS175 0.42 PFR28_01078 Adenine phosphoribosyltransferase 0.46 PFR28_00990 Free methionine-R-sulfoxide reductase low > 88
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_2324 Adenine phosphoribosyltransferase (EC 2.4.2.7) 0.47 Pf6N2E2_2440 Free methionine-(R)-sulfoxide reductase, contains GAF domain low > 103
Phocaeicola vulgatus CL09T03C04 0.42 HMPREF1058_RS11530 adenine phosphoribosyltransferase 0.41 HMPREF1058_RS05760 GAF domain-containing protein low > 67
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_01965 adenine phosphoribosyltransferase 0.44 OKGIIK_16450 msrC diguanylate cyclase low > 52
Phocaeicola dorei CL03T12C01 0.41 ABI39_RS05410 adenine phosphoribosyltransferase 0.40 ABI39_RS18350 GAF domain-containing protein low > 72
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_3426 adenine phosphoribosyltransferase 0.45 Psyr_3610 GAF — —
Bacteroides thetaiotaomicron VPI-5482 0.41 BT3267 adenine phosphoribosyltransferase (NCBI ptt file) 0.33 BT1810 GAF domain-containing protein, involved in signal transduction (NCBI ptt file) low > 81
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_3426 adenine phosphoribosyltransferase 0.45 Psyr_3610 GAF low > 86
Lysobacter sp. OAE881 0.40 ABIE51_RS05465 adenine phosphoribosyltransferase 0.45 ABIE51_RS17995 GAF domain-containing protein low > 62
Mucilaginibacter yixingensis YX-36 DSM 26809 0.39 ABZR88_RS01200 adenine phosphoribosyltransferase 0.38 ABZR88_RS09815 GAF domain-containing protein low > 71
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.2273.1 Adenine phosphoribosyltransferase (EC 2.4.2.7) 0.41 Xcc-8004.4532.1 Free methionine-(R)-sulfoxide reductase, contains GAF domain low > 74
Pseudomonas putida KT2440 0.39 PP_4266 Adenine phosphoribosyltransferase 0.47 PP_1877 free methionine-(R)-sulfoxide reductase low > 96
Rhodanobacter denitrificans FW104-10B01 0.34 LRK54_RS04790 adenine phosphoribosyltransferase 0.44 LRK54_RS07200 GAF domain-containing protein low > 59
Rhodanobacter denitrificans MT42 0.34 LRK55_RS04570 adenine phosphoribosyltransferase 0.44 LRK55_RS06935 GAF domain-containing protein low > 63

Not shown: 27 genomes with orthologs for HER17_RS15710 only; 8 genomes with orthologs for HER17_RS11700 only