Conservation of cofitness between HER17_RS17265 and HER17_RS11210 in Pectobacterium carotovorum WPP14

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS17265 oxygen-dependent coproporphyrinogen oxidase 1.0 HER17_RS11210 SpoVR family protein 0.92 5
Dickeya dadantii 3937 0.81 DDA3937_RS04365 oxygen-dependent coproporphyrinogen oxidase 0.91 DDA3937_RS11175 SpoVR family protein
Rahnella sp. WP5 0.80 EX31_RS20260 oxygen-dependent coproporphyrinogen oxidase 0.87 EX31_RS10500 SpoVR family protein low > 89
Dickeya dianthicola 67-19 0.80 HGI48_RS04355 oxygen-dependent coproporphyrinogen oxidase 0.91 HGI48_RS11200 SpoVR family protein low > 71
Dickeya dianthicola ME23 0.79 DZA65_RS04275 oxygen-dependent coproporphyrinogen oxidase 0.91 DZA65_RS11545 SpoVR family protein
Serratia liquefaciens MT49 0.78 IAI46_18545 oxygen-dependent coproporphyrinogen oxidase 0.89 IAI46_14470 SpoVR family protein low > 86
Pantoea sp. MT58 0.76 IAI47_05360 oxygen-dependent coproporphyrinogen oxidase 0.86 IAI47_08885 SpoVR family protein
Erwinia tracheiphila SCR3 0.75 LU632_RS06720 hemF oxygen-dependent coproporphyrinogen oxidase 0.85 LU632_RS13075 SpoVR family protein
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF2066 Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) 0.87 GFF2805 FIG004684: SpoVR-like protein low > 78
Escherichia coli ECOR27 0.73 NOLOHH_13775 hemF oxygen-dependent coproporphyrinogen oxidase 0.86 NOLOHH_20730 ycgB SpoVR family protein low > 75
Escherichia coli ECRC62 0.73 BNILDI_12640 hemF oxygen-dependent coproporphyrinogen oxidase 0.86 BNILDI_18895 ycgB SpoVR family protein low > 75
Escherichia coli BL21 0.73 ECD_02336 coproporphyrinogen III oxidase 0.86 ECD_01163 SpoVR family stationary phase protein low > 61
Escherichia coli Nissle 1917 0.73 ECOLIN_RS13965 oxygen-dependent coproporphyrinogen oxidase 0.86 ECOLIN_RS07180 SpoVR family protein low > 55
Escherichia coli BW25113 0.73 b2436 hemF coproporphyrinogen III oxidase (NCBI) 0.86 b1188 ycgB ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_01286 Oxygen-dependent coproporphyrinogen-III oxidase 0.86 OHPLBJKB_02501 hypothetical protein low > 73
Escherichia coli ECOR38 0.73 HEPCGN_21270 hemF oxygen-dependent coproporphyrinogen oxidase 0.86 HEPCGN_24745 ycgB SpoVR family protein low > 87
Enterobacter sp. TBS_079 0.72 MPMX20_03323 Oxygen-dependent coproporphyrinogen-III oxidase 0.86 MPMX20_02700 hypothetical protein low > 85
Shewanella loihica PV-4 0.72 Shew_3729 coproporphyrinogen III oxidase (RefSeq) 0.74 Shew_1831 hypothetical protein (RefSeq) low > 60
Enterobacter asburiae PDN3 0.72 EX28DRAFT_0199 coproporphyrinogen oxidase (EC 1.3.3.3) 0.86 EX28DRAFT_0765 Uncharacterized conserved protein low > 76
Escherichia fergusonii Becca 0.72 EFB2_01443 Oxygen-dependent coproporphyrinogen-III oxidase 0.86 EFB2_02744 hypothetical protein low > 86
Escherichia coli ECRC102 0.71 NIAGMN_19865 hemF oxygen-dependent coproporphyrinogen oxidase 0.86 NIAGMN_27935 ycgB SpoVR family protein
Escherichia coli ECRC100 0.71 OKFHMN_22095 hemF oxygen-dependent coproporphyrinogen oxidase 0.86 OKFHMN_28285 ycgB SpoVR family protein low > 80
Escherichia coli ECRC98 0.71 JDDGAC_26045 hemF oxygen-dependent coproporphyrinogen oxidase 0.86 JDDGAC_06225 ycgB SpoVR family protein low > 86
Escherichia coli ECRC101 0.71 MCAODC_12625 hemF oxygen-dependent coproporphyrinogen oxidase 0.86 MCAODC_21885 ycgB SpoVR family protein low > 87
Escherichia coli ECRC99 0.71 KEDOAH_06125 hemF oxygen-dependent coproporphyrinogen oxidase 0.86 KEDOAH_25300 ycgB SpoVR family protein
Shewanella sp. ANA-3 0.71 Shewana3_0041 coproporphyrinogen III oxidase (RefSeq) 0.74 Shewana3_1636 SpoVR family protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.71 SO0038 hemF coproporphyrinogen III oxidase, aerobic (NCBI ptt file) 0.74 SO2884 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 76
Klebsiella michiganensis M5al 0.70 BWI76_RS20740 coproporphyrinogen III oxidase 0.86 BWI76_RS17740 SpoVR family protein low > 92
Shewanella amazonensis SB2B 0.69 Sama_0050 coproporphyrinogen III oxidase (RefSeq) 0.74 Sama_1923 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 62
Alteromonas macleodii MIT1002 0.69 MIT1002_00026 Coproporphyrinogen-III oxidase, aerobic 0.74 MIT1002_01231 SpoVR family protein
Pseudomonas stutzeri RCH2 0.67 Psest_0028 Coproporphyrinogen III oxidase 0.69 Psest_3674 Uncharacterized conserved protein low > 67
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_1907 Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) 0.67 Pf1N1B4_2521 FIG004684: SpoVR-like protein
Pseudomonas fluorescens GW456-L13 0.67 PfGW456L13_645 Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) 0.68 PfGW456L13_1194 FIG004684: SpoVR-like protein
Pseudomonas sp. RS175 0.66 PFR28_04656 Oxygen-dependent coproporphyrinogen-III oxidase 0.69 PFR28_04070 hypothetical protein
Pseudomonas putida KT2440 0.66 PP_0073 Coproporphyrinogen-III oxidase, aerobic 0.67 PP_0395 putative type IV piliation protein
Pseudomonas fluorescens FW300-N2E3 0.66 AO353_10665 coproporphyrinogen III oxidase 0.67 AO353_07345 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data)
Pseudomonas syringae pv. syringae B728a ΔmexB 0.66 Psyr_0024 coproporphyrinogen oxidase 0.69 Psyr_4633 SpoVR
Pseudomonas syringae pv. syringae B728a 0.66 Psyr_0024 coproporphyrinogen oxidase 0.69 Psyr_4633 SpoVR
Pseudomonas fluorescens FW300-N2C3 0.66 AO356_11310 coproporphyrinogen III oxidase 0.69 AO356_14305 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data)
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_00275 coproporphyrinogen III oxidase 0.77 CSW01_09390 SpoVR family protein
Pseudomonas sp. S08-1 0.66 OH686_12490 Coproporphyrinogen III oxidase, aerobic 0.69 OH686_15010 SpoVR-like protein
Pseudomonas fluorescens FW300-N2E2 0.66 Pf6N2E2_4129 Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) 0.67 Pf6N2E2_4799 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data)
Pseudomonas fluorescens SBW25-INTG 0.65 PFLU_RS00115 oxygen-dependent coproporphyrinogen oxidase 0.68 PFLU_RS27495 SpoVR family protein
Pseudomonas fluorescens SBW25 0.65 PFLU_RS00115 oxygen-dependent coproporphyrinogen oxidase 0.68 PFLU_RS27495 SpoVR family protein
Pseudomonas simiae WCS417 0.64 PS417_00120 coproporphyrinogen III oxidase 0.68 PS417_25840 SpoVR family protein
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS17765 coproporphyrinogen III oxidase 0.68 HSERO_RS21700 SpoVR family protein
Paraburkholderia sabiae LMG 24235 0.62 QEN71_RS24405 oxygen-dependent coproporphyrinogen oxidase 0.66 QEN71_RS07385 SpoVR family protein
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS06400 oxygen-dependent coproporphyrinogen-III oxidase 0.66 BPHYT_RS11180 SpoVR family protein low > 109
Paraburkholderia graminis OAS925 0.62 ABIE53_001544 coproporphyrinogen III oxidase 0.66 ABIE53_002316 stage V sporulation protein R low > 113
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_04520 coproporphyrinogen oxidase 0.66 H281DRAFT_05234 Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation
Ralstonia sp. UNC404CL21Col 0.62 ABZR87_RS15415 oxygen-dependent coproporphyrinogen oxidase 0.64 ABZR87_RS14210 SpoVR family protein
Cupriavidus basilensis FW507-4G11 0.61 RR42_RS04725 coproporphyrinogen III oxidase 0.65 RR42_RS36475 SpoVR family protein
Variovorax sp. SCN45 0.59 GFF301 Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) 0.66 GFF2935 FIG004684: SpoVR-like protein
Acidovorax sp. GW101-3H11 0.59 Ac3H11_2420 Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) 0.63 Ac3H11_1147 FIG004684: SpoVR-like protein
Castellaniella sp019104865 MT123 0.58 ABCV34_RS02545 oxygen-dependent coproporphyrinogen oxidase 0.14 ABCV34_RS05550 SpoVR family protein low > 48
Pontibacter actiniarum KMM 6156, DSM 19842 0.39 CA264_05715 coproporphyrinogen III oxidase 0.50 CA264_07090 SpoVR family protein
Azospirillum sp. SherDot2 0.34 MPMX19_05010 Oxygen-dependent coproporphyrinogen-III oxidase 0.49 MPMX19_02155 hypothetical protein
Phaeobacter inhibens DSM 17395 0.33 PGA1_c29970 coproporphyrinogen 3 oxidase, aerobic 0.51 PGA1_c02490 sporulation protein R-like protein
Sinorhizobium meliloti 1021 0.31 SMc00180 coproporphyrinogen III oxidase 0.51 SMc01265 SpoVR family protein
Rhizobium sp. OAE497 0.30 ABIE40_RS13225 oxygen-dependent coproporphyrinogen oxidase 0.47 ABIE40_RS12540 SpoVR family protein

Not shown: 25 genomes with orthologs for HER17_RS17265 only; 3 genomes with orthologs for HER17_RS11210 only