Conservation of cofitness between PS417_23375 and PS417_23385 in Pseudomonas simiae WCS417

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_23375 cytochrome C oxidase 1.0 PS417_23385 cytochrome o ubiquinol oxidase subunit I 0.85 2
Pseudomonas fluorescens SBW25 1.00 PFLU_RS25205 cytochrome o ubiquinol oxidase subunit IV 0.99 PFLU_RS25215 cytochrome o ubiquinol oxidase subunit I 0.94 2
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS25205 cytochrome o ubiquinol oxidase subunit IV 0.99 PFLU_RS25215 cytochrome o ubiquinol oxidase subunit I 0.92 1
Pseudomonas fluorescens FW300-N1B4 0.88 Pf1N1B4_970 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) 0.93 Pf1N1B4_972 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) 0.98 2
Pseudomonas sp. RS175 0.82 PFR28_00245 Cytochrome bo(3) ubiquinol oxidase subunit 4 0.92 PFR28_00243 Cytochrome bo(3) ubiquinol oxidase subunit 1 0.27 33
Pseudomonas fluorescens FW300-N2E2 0.82 Pf6N2E2_5320 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) 0.92 Pf6N2E2_5318 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) 0.96 1
Pseudomonas fluorescens FW300-N2C3 0.82 AO356_16975 cytochrome C oxidase 0.92 AO356_16965 cytochrome o ubiquinol oxidase subunit I 0.93 1
Pseudomonas fluorescens GW456-L13 0.80 PfGW456L13_4933 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) 0.90 PfGW456L13_4935 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) 0.95 4
Pseudomonas fluorescens FW300-N2E3 0.74 AO353_15465 cytochrome C oxidase 0.91 AO353_15455 cytochrome o ubiquinol oxidase subunit I 0.93 1
Pseudomonas putida KT2440 0.68 PP_0815 cytochrome bo terminal oxidase subunit IV 0.82 PP_0813 cytochrome bo terminal oxidase subunit I — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.65 Psyr_1144 cytochrome bo3 quinol oxidase subunit 4 0.83 Psyr_1142 cytochrome bo3 quinol oxidase subunit 1 apoprotein — —
Pseudomonas syringae pv. syringae B728a 0.65 Psyr_1144 cytochrome bo3 quinol oxidase subunit 4 0.83 Psyr_1142 cytochrome bo3 quinol oxidase subunit 1 apoprotein — —
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS32585 cytochrome C oxidase 0.69 RR42_RS32595 cytochrome o ubiquinol oxidase subunit I 0.65 1
Dickeya dianthicola 67-19 0.53 HGI48_RS05645 cytochrome o ubiquinol oxidase subunit IV 0.70 HGI48_RS05655 cytochrome o ubiquinol oxidase subunit I — —
Dickeya dadantii 3937 0.53 DDA3937_RS05600 cytochrome o ubiquinol oxidase subunit IV 0.70 DDA3937_RS05610 cytochrome o ubiquinol oxidase subunit I — —
Dickeya dianthicola ME23 0.53 DZA65_RS05970 cytochrome o ubiquinol oxidase subunit IV 0.70 DZA65_RS05980 cytochrome o ubiquinol oxidase subunit I — —
Pectobacterium carotovorum WPP14 0.52 HER17_RS15890 cytochrome o ubiquinol oxidase subunit IV 0.70 HER17_RS15880 cytochrome o ubiquinol oxidase subunit I 0.78 26
Rahnella sp. WP5 0.49 EX31_RS22205 cytochrome o ubiquinol oxidase subunit IV 0.69 EX31_RS22215 cytochrome o ubiquinol oxidase subunit I 0.98 1
Serratia liquefaciens MT49 0.49 IAI46_04970 cytochrome o ubiquinol oxidase subunit IV 0.70 IAI46_04980 cytochrome o ubiquinol oxidase subunit I 0.52 13
Pantoea sp. MT58 0.49 IAI47_14695 cytochrome o ubiquinol oxidase subunit IV 0.68 IAI47_14685 cytochrome o ubiquinol oxidase subunit I 0.90 1
Shewanella loihica PV-4 0.48 Shew_0369 cytochrome C oxidase subunit IV (RefSeq) 0.72 Shew_0367 cytochrome-c oxidase (RefSeq) low > 60
Acinetobacter radioresistens SK82 0.48 MPMX26_01159 Cytochrome bo(3) ubiquinol oxidase subunit 4 0.65 MPMX26_01161 Cytochrome bo(3) ubiquinol oxidase subunit 1 0.84 3
Erwinia tracheiphila SCR3 0.47 LU632_RS18390 cytochrome o ubiquinol oxidase subunit IV 0.67 LU632_RS18380 cyoB cytochrome o ubiquinol oxidase subunit I — —
Shewanella sp. ANA-3 0.47 Shewana3_4034 cytochrome C oxidase subunit IV (RefSeq) 0.72 Shewana3_4032 cytochrome c oxidase, subunit I (RefSeq) 0.33 26
Escherichia fergusonii Becca 0.47 EFB2_03628 Cytochrome bo(3) ubiquinol oxidase subunit 4 0.70 EFB2_03626 Cytochrome bo(3) ubiquinol oxidase subunit 1 low > 86
Escherichia coli ECRC101 0.46 OKFHMN_08375 cyoD cytochrome o ubiquinol oxidase subunit III 0.70 OKFHMN_08365 cyoB cytochrome o ubiquinol oxidase subunit I — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.46 OHPLBJKB_03244 Cytochrome bo(3) ubiquinol oxidase subunit 4 0.70 OHPLBJKB_03242 Cytochrome bo(3) ubiquinol oxidase subunit 1 0.60 3
Escherichia coli ECRC102 0.46 NIAGMN_06430 cyoD cytochrome o ubiquinol oxidase subunit III 0.70 NIAGMN_06420 cyoB cytochrome o ubiquinol oxidase subunit I — —
Escherichia coli ECRC62 0.46 BNILDI_22725 cyoD cytochrome o ubiquinol oxidase subunit III 0.70 BNILDI_22715 cyoB cytochrome o ubiquinol oxidase subunit I — —
Escherichia coli ECRC99 0.46 KEDOAH_19590 cyoD cytochrome o ubiquinol oxidase subunit III 0.70 KEDOAH_19600 cyoB cytochrome o ubiquinol oxidase subunit I — —
Escherichia coli ECRC98 0.46 JDDGAC_12030 cyoD cytochrome o ubiquinol oxidase subunit III 0.70 JDDGAC_12020 cyoB cytochrome o ubiquinol oxidase subunit I — —
Escherichia coli ECOR27 0.46 NOLOHH_01310 cyoD cytochrome o ubiquinol oxidase subunit III 0.70 NOLOHH_01300 cyoB cytochrome o ubiquinol oxidase subunit I low > 57
Escherichia coli BW25113 0.46 b0429 cyoD cytochrome o ubiquinol oxidase subunit IV (NCBI) 0.70 b0431 cyoB cytochrome o ubiquinol oxidase subunit I (NCBI) 0.92 3
Escherichia coli ECOR38 0.46 HEPCGN_06990 cyoD cytochrome o ubiquinol oxidase subunit III 0.70 HEPCGN_06980 cyoB cytochrome o ubiquinol oxidase subunit I low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF4343 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) 0.69 GFF4345 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) 0.90 1
Escherichia coli BL21 0.46 ECD_00380 cytochrome o ubiquinol oxidase subunit IV 0.70 ECD_00382 cytochrome o ubiquinol oxidase subunit I 0.70 1
Escherichia coli ECRC101 0.46 MCAODC_27600 cyoD cytochrome o ubiquinol oxidase subunit III 0.70 MCAODC_27590 cyoB cytochrome o ubiquinol oxidase subunit I — —
Alteromonas macleodii MIT1002 0.46 MIT1002_03926 Cytochrome o ubiquinol oxidase protein CyoD 0.71 MIT1002_03928 Ubiquinol oxidase subunit 1 low > 70
Escherichia coli Nissle 1917 0.46 ECOLIN_RS02580 cytochrome o ubiquinol oxidase subunit IV 0.70 ECOLIN_RS02590 cytochrome o ubiquinol oxidase subunit I 0.92 3
Brevundimonas sp. GW460-12-10-14-LB2 0.45 A4249_RS04460 cytochrome o ubiquinol oxidase subunit IV 0.60 A4249_RS04450 cytochrome o ubiquinol oxidase subunit I 0.68 14
Xanthomonas campestris pv. campestris strain 8004 0.45 Xcc-8004.3814.1 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) 0.66 Xcc-8004.3816.1 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) — —
Enterobacter sp. TBS_079 0.45 MPMX20_01020 Cytochrome bo(3) ubiquinol oxidase subunit 4 0.69 MPMX20_01022 Cytochrome bo(3) ubiquinol oxidase subunit 1 0.59 1
Ralstonia solanacearum GMI1000 0.45 RS_RS14595 cytochrome o ubiquinol oxidase subunit IV 0.68 RS_RS14605 cytochrome o ubiquinol oxidase subunit I — —
Enterobacter asburiae PDN3 0.45 EX28DRAFT_2542 cytochrome o ubiquinol oxidase subunit IV 0.69 EX28DRAFT_2540 cytochrome o ubiquinol oxidase, subunit I — —
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS02320 cytochrome o ubiquinol oxidase subunit IV 0.68 ABZR87_RS02330 cytochrome o ubiquinol oxidase subunit I 0.61 1
Caulobacter crescentus NA1000 Δfur 0.45 CCNA_01848 quinol cytochrome oxidase polypeptide IV 0.64 CCNA_01850 quinol cytochrome oxidase polypeptide I low > 67
Caulobacter crescentus NA1000 0.45 CCNA_01848 quinol cytochrome oxidase polypeptide IV 0.64 CCNA_01850 quinol cytochrome oxidase polypeptide I 0.93 1
Burkholderia phytofirmans PsJN 0.44 BPHYT_RS24930 cytochrome C oxidase subunit III 0.66 BPHYT_RS24920 cytochrome O ubiquinol oxidase 0.30 9
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS36885 cytochrome o ubiquinol oxidase subunit IV 0.67 QEN71_RS15345 cytochrome o ubiquinol oxidase subunit I — —
Klebsiella michiganensis M5al 0.43 BWI76_RS06480 cytochrome o ubiquinol oxidase subunit IV 0.70 BWI76_RS06490 cytochrome ubiquinol oxidase subunit I — —
Ralstonia solanacearum UW163 0.40 UW163_RS06980 cytochrome o ubiquinol oxidase subunit IV 0.68 UW163_RS06970 cytochrome o ubiquinol oxidase subunit I — —
Sinorhizobium meliloti 1021 0.40 SM_b22024 cytochrome O ubiquinol oxidase CyoD 0.62 SM_b21488 cytochrome o ubiquinol oxidase subunit I — —
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS06645 cytochrome o ubiquinol oxidase subunit IV 0.68 RALBFv3_RS06655 cytochrome o ubiquinol oxidase subunit I — —
Variovorax sp. SCN45 0.39 GFF5675 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) 0.62 GFF5677 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) 0.88 1
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_03429 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) 0.61 H281DRAFT_03427 cytochrome bo3 quinol oxidase subunit 1 apoprotein 0.31 51
Ralstonia solanacearum PSI07 0.38 RPSI07_RS10580 cytochrome o ubiquinol oxidase subunit IV 0.69 RPSI07_RS10570 cytochrome o ubiquinol oxidase subunit I — —
Agrobacterium fabrum C58 0.37 Atu0139 cytochrome o ubiquinol oxidase subunit IV 0.62 Atu0141 cytochrome O ubiquinol oxidase subunit I — —
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS07610 cytochrome o ubiquinol oxidase subunit IV 0.60 ABZR86_RS07620 cytochrome o ubiquinol oxidase subunit I 0.91 1
Variovorax sp. OAS795 0.36 ABID97_RS07625 cytochrome o ubiquinol oxidase subunit IV 0.62 ABID97_RS07635 cytochrome o ubiquinol oxidase subunit I 0.57 20
Sphingomonas koreensis DSMZ 15582 0.36 Ga0059261_1563 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) 0.58 Ga0059261_1565 cytochrome bo3 quinol oxidase subunit 1 apoprotein (EC 1.10.3.-) 0.83 1
Lysobacter sp. OAE881 0.35 ABIE51_RS09780 cytochrome o ubiquinol oxidase subunit IV 0.61 ABIE51_RS09770 cytochrome o ubiquinol oxidase subunit I 0.77 4
Paraburkholderia graminis OAS925 0.35 ABIE53_005343 cytochrome o ubiquinol oxidase operon protein cyoD 0.62 ABIE53_005341 cytochrome o ubiquinol oxidase subunit 1 — —
Acidovorax sp. GW101-3H11 0.35 Ac3H11_3144 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) 0.56 Ac3H11_3142 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) — —
Rhizobium sp. OAE497 0.35 ABIE40_RS20875 cytochrome o ubiquinol oxidase subunit IV 0.63 ABIE40_RS19820 cytochrome o ubiquinol oxidase subunit I low > 107
Bosea sp. OAE506 0.35 ABIE41_RS21035 cytochrome o ubiquinol oxidase subunit IV 0.59 ABIE41_RS21025 cytochrome o ubiquinol oxidase subunit I low > 77

Not shown: 0 genomes with orthologs for PS417_23375 only; 3 genomes with orthologs for PS417_23385 only