Conservation of cofitness between GFF668 and GFF4285 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF668 Histidine ammonia-lyase (EC 4.3.1.3) 1.0 GFF4285 Protein YaiI 0.56 3
Enterobacter asburiae PDN3 0.84 EX28DRAFT_2219 histidine ammonia-lyase (EC 4.3.1.3) 0.84 EX28DRAFT_2584 Uncharacterized protein conserved in bacteria — —
Enterobacter sp. TBS_079 0.84 MPMX20_01400 Histidine ammonia-lyase 0.84 MPMX20_00977 hypothetical protein low > 85
Klebsiella michiganensis M5al 0.82 BWI76_RS08740 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.83 BWI76_RS06175 DUF188 domain-containing protein 0.13 33
Pseudomonas simiae WCS417 0.78 PS417_01750 histidine ammonia-lyase 0.36 PS417_27460 hypothetical protein low > 88
Pseudomonas fluorescens SBW25 0.78 PFLU_RS01805 histidine ammonia-lyase 0.35 PFLU_RS29120 YaiI/YqxD family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.78 PFLU_RS01805 histidine ammonia-lyase 0.35 PFLU_RS29120 YaiI/YqxD family protein low > 109
Serratia liquefaciens MT49 0.77 IAI46_03660 histidine ammonia-lyase 0.79 IAI46_18550 YaiI/YqxD family protein low > 86
Pseudomonas sp. S08-1 0.77 OH686_16755 histidine ammonia-lyase 0.34 OH686_13970 Protein YaiI low > 80
Pseudomonas fluorescens FW300-N2C3 0.77 AO356_09600 histidine ammonia-lyase 0.36 AO356_12870 hypothetical protein low > 104
Pseudomonas putida KT2440 0.77 PP_5032 Histidine ammonia-lyase 0.36 PP_5221 conserved protein of unknown function, UPF0178 family low > 96
Pseudomonas fluorescens FW300-N2E2 0.77 Pf6N2E2_3799 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.37 Pf6N2E2_4448 probable P23 protein low > 103
Pseudomonas fluorescens FW300-N2E3 0.77 AO353_12270 histidine ammonia-lyase 0.36 AO353_08910 hypothetical protein low > 101
Pseudomonas fluorescens GW456-L13 0.76 PfGW456L13_320 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.36 PfGW456L13_869 probable P23 protein low > 87
Pseudomonas fluorescens FW300-N1B4 0.76 Pf1N1B4_1581 Histidine ammonia-lyase (EC 4.3.1.3) 0.36 Pf1N1B4_2203 probable P23 protein low > 87
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_06080 histidine ammonia-lyase 0.59 CSW01_04525 DUF188 domain-containing protein low > 62
Shewanella oneidensis MR-1 0.67 SO0098 hutH histidine ammonia-lyase (NCBI ptt file) 0.64 SO2894 YaiI/YqxD family protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.67 Shewana3_0101 histidine ammonia-lyase (RefSeq) 0.66 Shewana3_1627 hypothetical protein (RefSeq) — —
Shewanella loihica PV-4 0.65 Shew_3756 histidine ammonia-lyase (RefSeq) 0.65 Shew_2726 hypothetical protein (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.63 MIT1002_00905 Histidine ammonia-lyase 0.60 MIT1002_02273 hypothetical protein low > 70
Paraburkholderia sabiae LMG 24235 0.59 QEN71_RS23515 histidine ammonia-lyase 0.57 QEN71_RS38155 YaiI/YqxD family protein low > 153
Kangiella aquimarina DSM 16071 0.59 B158DRAFT_1432 histidine ammonia-lyase (EC 4.3.1.3) 0.62 B158DRAFT_2279 Uncharacterized protein conserved in bacteria low > 40
Ralstonia solanacearum PSI07 0.57 RPSI07_RS11915 histidine ammonia-lyase 0.54 RPSI07_RS06560 YaiI/YqxD family protein low > 81
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS07555 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.58 BPHYT_RS28065 hypothetical protein low > 109
Paraburkholderia graminis OAS925 0.57 ABIE53_001729 histidine ammonia-lyase 0.57 ABIE53_001465 uncharacterized protein YaiI (UPF0178 family) low > 113
Rahnella sp. WP5 0.55 EX31_RS06755 histidine ammonia-lyase 0.75 EX31_RS20265 YaiI/YqxD family protein low > 89
Castellaniella sp019104865 MT123 0.54 ABCV34_RS12780 histidine ammonia-lyase 0.60 ABCV34_RS01010 YaiI/YqxD family protein low > 48
Dickeya dadantii 3937 0.54 DDA3937_RS14995 histidine ammonia-lyase 0.73 DDA3937_RS04360 YaiI/YqxD family protein low > 74
Azospirillum sp. SherDot2 0.54 MPMX19_04940 Histidine ammonia-lyase 0.29 MPMX19_00625 hypothetical protein low > 112
Rhodospirillum rubrum S1H 0.54 Rru_A1301 Histidine ammonia-lyase (NCBI) 0.32 Rru_A0086 Protein of unknown function DUF188 (NCBI) low > 58
Dickeya dianthicola 67-19 0.54 HGI48_RS15090 histidine ammonia-lyase 0.72 HGI48_RS04350 YaiI/YqxD family protein low > 71
Pantoea sp. MT58 0.54 IAI47_13275 histidine ammonia-lyase 0.79 IAI47_14940 YaiI/YqxD family protein low > 76
Dickeya dianthicola ME23 0.53 DZA65_RS15835 histidine ammonia-lyase 0.72 DZA65_RS04270 YaiI/YqxD family protein low > 75
Brevundimonas sp. GW460-12-10-14-LB2 0.50 A4249_RS06630 histidine ammonia-lyase 0.32 A4249_RS13965 YaiI/YqxD family protein low > 48
Sphingomonas koreensis DSMZ 15582 0.49 Ga0059261_3963 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.31 Ga0059261_3406 Uncharacterized protein conserved in bacteria low > 68
Sinorhizobium meliloti 1021 0.49 SM_b21165 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.32 SMc01271 hypothetical protein — —
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.3296.1 Histidine ammonia-lyase (EC 4.3.1.3) 0.55 Xcc-8004.2266.1 FIG01211351: hypothetical protein low > 74
Rhizobium sp. OAE497 0.48 ABIE40_RS20355 histidine ammonia-lyase 0.30 ABIE40_RS09875 YaiI/YqxD family protein low > 107
Bosea sp. OAE506 0.48 ABIE41_RS23645 histidine ammonia-lyase 0.36 ABIE41_RS11800 YaiI/YqxD family protein low > 77
Agrobacterium fabrum C58 0.48 Atu3933 histidine ammonia-lyase 0.28 Atu1478 hypothetical protein low > 89
Caulobacter crescentus NA1000 0.48 CCNA_01010 histidine ammonia-lyase 0.33 CCNA_01273 EMG2 protein low > 66
Caulobacter crescentus NA1000 Δfur 0.48 CCNA_01010 histidine ammonia-lyase 0.33 CCNA_01273 EMG2 protein low > 67
Phaeobacter inhibens DSM 17395 0.45 PGA1_c36340 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.32 PGA1_c31620 Uncharacterized protein conserved in bacteria low > 62
Shewanella amazonensis SB2B 0.39 Sama_1631 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.67 Sama_3557 hypothetical protein (RefSeq) low > 62
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS06750 histidine ammonia-lyase 0.60 ABZR86_RS00425 YaiI/YqxD family protein low > 74
Herbaspirillum seropedicae SmR1 0.29 HSERO_RS22680 histidine ammonia-lyase 0.59 HSERO_RS02105 hypothetical protein low > 78
Lysobacter sp. OAE881 0.28 ABIE51_RS13345 aromatic amino acid lyase 0.64 ABIE51_RS09850 YaiI/YqxD family protein low > 62
Escherichia coli ECOR38 0.20 HEPCGN_01360 histidine ammonia-lyase 0.91 HEPCGN_07245 yaiI YaiI/YqxD family protein low > 85
Pseudomonas stutzeri RCH2 0.20 Psest_3695 Histidine ammonia-lyase 0.37 Psest_3736 Uncharacterized protein conserved in bacteria low > 67

Not shown: 27 genomes with orthologs for GFF668 only; 21 genomes with orthologs for GFF4285 only