| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Marinobacter adhaerens HP15 | 1.0 | HP15_2221 | | pseudouridine synthase, RluA family | 1.0 | HP15_407 | | transporter, major facilitator family | 0.43 | 5 |
| Shewanella loihica PV-4 | 0.49 | Shew_1594 | | RluA family pseudouridine synthase (RefSeq) | 0.39 | Shew_0534 | | major facilitator transporter (RefSeq) | low | > 60 |
| Pantoea sp. MT58 | 0.48 | IAI47_12105 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.40 | IAI47_14705 | | MFS transporter | low | > 76 |
| Shewanella amazonensis SB2B | 0.48 | Sama_1988 | | pseudouridylate synthase (RefSeq) | 0.40 | Sama_0515 | | transporter, putative (RefSeq) | low | > 62 |
| Erwinia tracheiphila SCR3 | 0.48 | LU632_RS14855 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.38 | LU632_RS18400 | | MFS transporter | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.47 | MIT1002_01725 | | Ribosomal large subunit pseudouridine synthase C | 0.29 | MIT1002_00180 | | Inner membrane transport protein YajR | low | > 70 |
| Shewanella sp. ANA-3 | 0.47 | Shewana3_2566 | | ribosomal large subunit pseudouridine synthase C (RefSeq) | 0.40 | Shewana3_3591 | | major facilitator transporter (RefSeq) | low | > 73 |
| Enterobacter asburiae PDN3 | 0.47 | EX28DRAFT_1844 | | pseudouridine synthase, RluA family | 0.38 | EX28DRAFT_2544 | | Arabinose efflux permease | low | > 76 |
| Enterobacter sp. TBS_079 | 0.47 | MPMX20_01766 | | Ribosomal large subunit pseudouridine synthase C | 0.38 | MPMX20_01018 | | Inner membrane transport protein YajR | low | > 85 |
| Escherichia coli ECRC102 | 0.46 | NIAGMN_24215 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.39 | NIAGMN_06440 | yajR | Inner membrane transport protein YajR | — | — |
| Escherichia coli ECRC101 | 0.46 | OKFHMN_03615 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.39 | OKFHMN_08385 | yajR | Inner membrane transport protein YajR | — | — |
| Escherichia coli ECRC101 | 0.46 | MCAODC_22975 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.39 | MCAODC_27610 | yajR | Inner membrane transport protein YajR | — | — |
| Escherichia coli ECRC99 | 0.46 | KEDOAH_24140 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.39 | KEDOAH_19580 | yajR | Inner membrane transport protein YajR | — | — |
| Escherichia coli ECRC98 | 0.46 | JDDGAC_07275 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.39 | JDDGAC_12040 | yajR | Inner membrane transport protein YajR | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.46 | OHPLBJKB_02580 | | Ribosomal large subunit pseudouridine synthase C | 0.39 | OHPLBJKB_03249 | | Inner membrane transport protein YajR | low | > 73 |
| Escherichia fergusonii Becca | 0.46 | EFB2_02889 | | Ribosomal large subunit pseudouridine synthase C | 0.39 | EFB2_03630 | | Inner membrane transport protein YajR | low | > 86 |
| Escherichia coli ECRC62 | 0.46 | BNILDI_19305 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.39 | BNILDI_22750 | yajR | Inner membrane transport protein YajR | — | — |
| Klebsiella michiganensis M5al | 0.46 | BWI76_RS11050 | | 23S rRNA pseudouridine(955/2504/2580) synthase | 0.39 | BWI76_RS06415 | | MFS transporter | — | — |
| Escherichia coli BL21 | 0.46 | ECD_01082 | | 23S rRNA pseudouridine(955,2504,2580) synthase | 0.39 | ECD_00375 | | putative transporter | 0.81 | 10 |
| Escherichia coli ECOR27 | 0.46 | NOLOHH_21145 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.39 | NOLOHH_01335 | yajR | Inner membrane transport protein YajR | low | > 57 |
| Escherichia coli Nissle 1917 | 0.46 | ECOLIN_RS06280 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.39 | ECOLIN_RS02570 | | MFS transporter | low | > 52 |
| Escherichia coli ECOR38 | 0.46 | HEPCGN_23865 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.39 | HEPCGN_07015 | yajR | Inner membrane transport protein YajR | low | > 85 |
| Escherichia coli BW25113 | 0.46 | b1086 | rluC | 23S rRNA pseudouridylate synthase (NCBI) | 0.39 | b0427 | yajR | putative transport protein (VIMSS) | 0.20 | 66 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.46 | GFF3366 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.39 | GFF4338 | | Putative transport protein | low | > 78 |
| Pseudomonas fluorescens FW300-N2C3 | 0.46 | AO356_20125 | | 23S rRNA pseudouridylate synthase | 0.43 | AO356_14790 | | MFS transporter | 0.32 | 31 |
| Pseudomonas fluorescens FW300-N2E2 | 0.46 | Pf6N2E2_5944 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.43 | Pf6N2E2_4889 | | Putative transport protein | 0.44 | 7 |
| Pseudomonas putida KT2440 | 0.46 | PP_1906 | | ribosomal large subunit pseudouridine synthase C | 0.45 | PP_0484 | | transporter of an unknown substrate | low | > 96 |
| Rahnella sp. WP5 | 0.46 | EX31_RS24400 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.42 | EX31_RS22195 | | MFS transporter | low | > 89 |
| Pseudomonas sp. RS175 | 0.45 | PFR28_03018 | | Ribosomal large subunit pseudouridine synthase C | 0.44 | PFR28_03973 | | Inner membrane transport protein YajR | low | > 88 |
| Pseudomonas sp. S08-1 | 0.45 | OH686_22095 | | LSU rRNA pseudouridine(955/2504/2580) synthase | 0.44 | OH686_15500 | | Inner membrane transport protein YajR | low | > 80 |
| Kangiella aquimarina DSM 16071 | 0.45 | B158DRAFT_1770 | | ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) | 0.32 | B158DRAFT_0886 | | Arabinose efflux permease | low | > 40 |
| Pseudomonas fluorescens SBW25-INTG | 0.45 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.44 | PFLU_RS27020 | | MFS transporter | 0.25 | 81 |
| Pseudomonas fluorescens SBW25 | 0.45 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.44 | PFLU_RS27020 | | MFS transporter | low | > 109 |
| Pseudomonas simiae WCS417 | 0.45 | PS417_21480 | | 23S rRNA pseudouridylate synthase | 0.43 | PS417_25390 | | MFS transporter | 0.27 | 83 |
| Pseudomonas fluorescens FW300-N2E3 | 0.45 | AO353_01405 | | 23S rRNA pseudouridylate synthase | 0.44 | AO353_06850 | | MFS transporter | 0.43 | 48 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.44 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | 0.45 | Psyr_4519 | | General substrate transporter:Major facilitator superfamily | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.44 | HER17_RS08615 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.41 | HER17_RS15900 | | MFS transporter | low | > 75 |
| Pseudomonas syringae pv. syringae B728a | 0.44 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | 0.45 | Psyr_4519 | | General substrate transporter:Major facilitator superfamily | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.44 | Psest_1680 | | pseudouridine synthase, RluA family | 0.42 | Psest_3575 | | Arabinose efflux permease | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.44 | PfGW456L13_2097 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.45 | PfGW456L13_1284 | | Putative transport protein | low | > 87 |
| Serratia liquefaciens MT49 | 0.44 | IAI46_09755 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.42 | IAI46_04960 | | MFS transporter | low | > 86 |
| Dickeya dianthicola 67-19 | 0.44 | HGI48_RS13220 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.40 | HGI48_RS05635 | | MFS transporter | low | > 71 |
| Dickeya dadantii 3937 | 0.44 | DDA3937_RS13155 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.40 | DDA3937_RS05575 | | MFS transporter | low | > 74 |
| Pseudomonas fluorescens FW300-N1B4 | 0.44 | Pf1N1B4_459 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.46 | Pf1N1B4_2612 | | Putative transport protein | — | — |
| Dickeya dianthicola ME23 | 0.44 | DZA65_RS13690 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.40 | DZA65_RS05960 | | MFS transporter | low | > 75 |
| Herbaspirillum seropedicae SmR1 | 0.42 | HSERO_RS09415 | | ribosomal large subunit pseudouridine synthase C | 0.32 | HSERO_RS19800 | | membrane protein | low | > 78 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.41 | GFF121 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.28 | GFF2754 | | putative transport protein | low | > 90 |
| Ralstonia sp. UNC404CL21Col | 0.40 | ABZR87_RS10090 | | RluA family pseudouridine synthase | 0.33 | ABZR87_RS07125 | | MFS transporter | 0.49 | 49 |
| Cupriavidus basilensis FW507-4G11 | 0.40 | RR42_RS14155 | | pseudouridine synthase | 0.29 | RR42_RS02150 | | membrane protein | low | > 128 |
| Ralstonia solanacearum PSI07 | 0.40 | RPSI07_RS19085 | | RluA family pseudouridine synthase | 0.32 | RPSI07_RS22060 | | MFS transporter | low | > 81 |
| Ralstonia solanacearum UW163 | 0.40 | UW163_RS11840 | | RluA family pseudouridine synthase | 0.33 | UW163_RS02340 | | MFS transporter | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.40 | RALBFv3_RS14375 | | RluA family pseudouridine synthase | 0.33 | RALBFv3_RS11240 | | MFS transporter | low | > 76 |
| Acidovorax sp. GW101-3H11 | 0.40 | Ac3H11_1590 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.28 | Ac3H11_4384 | | putative transport protein | low | > 79 |
| Ralstonia solanacearum GMI1000 | 0.39 | RS_RS05155 | | RluA family pseudouridine synthase | 0.33 | RS_RS02085 | | MFS transporter | low | > 80 |
| Paraburkholderia sabiae LMG 24235 | 0.39 | QEN71_RS04500 | | RluA family pseudouridine synthase | 0.32 | QEN71_RS01830 | | MFS transporter | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.39 | ABIE53_003058 | | 23S rRNA pseudouridine955/2504/2580 synthase | 0.32 | ABIE53_000733 | | MFS family permease | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.39 | H281DRAFT_04340 | | 23S rRNA pseudouridine955/2504/2580 synthase | 0.32 | H281DRAFT_01912 | | Predicted arabinose efflux permease, MFS family | — | — |
| Castellaniella sp019104865 MT123 | 0.39 | ABCV34_RS08415 | | RluA family pseudouridine synthase | 0.28 | ABCV34_RS12720 | | MFS transporter | — | — |
| Burkholderia phytofirmans PsJN | 0.38 | BPHYT_RS14480 | | ribosomal large subunit pseudouridine synthase C | 0.31 | BPHYT_RS02975 | | membrane protein | 0.42 | 106 |
| Dechlorosoma suillum PS | 0.38 | Dsui_2437 | | pseudouridine synthase, RluA family | 0.34 | Dsui_3480 | | arabinose efflux permease family protein | — | — |
| Rhodanobacter sp. FW510-T8 | 0.37 | OKGIIK_07405 | rluA | 23S rRNA pseudouridine(955/2504/2580) synthase | 0.25 | OKGIIK_01605 | | putative arabinose efflux permease, MFS family | low | > 52 |
Not shown: 21 genomes with orthologs for HP15_2221 only; 2 genomes with orthologs for HP15_407 only