Conservation of cofitness between PS417_10540 and PS417_21065 in Pseudomonas simiae WCS417

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_10540 NAD-dependent deacetylase 1.0 PS417_21065 3-methylitaconate isomerase 0.21 2
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS10600 NAD-dependent protein deacetylase 0.95 PFLU_RS22675 2-methylaconitate cis-trans isomerase PrpF low > 109
Pseudomonas fluorescens SBW25 0.88 PFLU_RS10600 NAD-dependent protein deacetylase 0.95 PFLU_RS22675 2-methylaconitate cis-trans isomerase PrpF low > 109
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_21660 NAD-dependent deacetylase 0.90 AO356_20880 3-methylitaconate isomerase low > 104
Pseudomonas fluorescens FW300-N2E2 0.73 Pf6N2E2_2109 NAD-dependent protein deacetylase of SIR2 family 0.91 Pf6N2E2_6064 2-methylaconitate isomerase low > 103
Pseudomonas fluorescens FW300-N2E3 0.70 AO353_26795 NAD-dependent deacetylase 0.87 AO353_00885 3-methylitaconate isomerase low > 101
Pseudomonas syringae pv. syringae B728a 0.66 Psyr_2362 Silent information regulator protein Sir2 0.81 Psyr_2088 2-methylaconitate cis-trans isomerase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.66 Psyr_2362 Silent information regulator protein Sir2 0.81 Psyr_2088 2-methylaconitate cis-trans isomerase — —
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS18330 NAD-dependent deacetylase 0.77 HSERO_RS11420 3-methylitaconate isomerase — —
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_03044 NAD-dependent protein deacetylase, SIR2 family 0.84 H281DRAFT_02982 2-methylaconitate cis-trans isomerase — —
Burkholderia phytofirmans PsJN 0.44 BPHYT_RS29640 NAD-dependent deacetylase 0.83 BPHYT_RS30140 3-methylitaconate isomerase low > 109
Paraburkholderia graminis OAS925 0.44 ABIE53_005120 NAD-dependent SIR2 family protein deacetylase 0.84 ABIE53_005044 putative AcnD-accessory protein PrpF low > 113
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS27705 NAD-dependent deacetylase 0.87 RR42_RS11275 3-methylitaconate isomerase low > 128
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.391.1 NAD-dependent protein deacetylase of SIR2 family 0.78 Xcc-8004.3976.1 2-methylaconitate cis-trans isomerase low > 74
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS20510 NAD-dependent protein deacetylase 0.84 QEN71_RS31055 2-methylaconitate cis-trans isomerase PrpF low > 153
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS05345 NAD-dependent protein deacetylase 0.81 ABZR86_RS08430 2-methylaconitate cis-trans isomerase PrpF low > 74
Lysobacter sp. OAE881 0.42 ABIE51_RS09130 NAD-dependent protein deacetylase 0.79 ABIE51_RS09485 2-methylaconitate cis-trans isomerase PrpF — —
Marinobacter adhaerens HP15 0.39 HP15_2625 silent information regulator protein Sir2 0.75 HP15_1929 AcnD-accessory protein PrpF — —
Ralstonia solanacearum PSI07 0.20 RPSI07_RS18020 NAD-dependent deacylase 0.83 RPSI07_RS00385 2-methylaconitate cis-trans isomerase PrpF low > 81
Variovorax sp. SCN45 0.20 GFF5049 NAD-dependent protein deacetylase of SIR2 family 0.79 GFF269 2-methylaconitate isomerase 0.41 58
Rhodopseudomonas palustris CGA009 0.19 TX73_013035 NAD-dependent protein deacetylase 0.21 TX73_024400 4-oxalomesaconate tautomerase low > 86
Pseudomonas stutzeri RCH2 0.19 Psest_2405 NAD-dependent protein deacetylases, SIR2 family 0.80 Psest_2318 probable AcnD-accessory protein PrpF — —
Ralstonia solanacearum GMI1000 0.19 RS_RS06165 NAD-dependent deacylase 0.83 RS_RS17725 2-methylaconitate cis-trans isomerase PrpF low > 80
Ralstonia sp. UNC404CL21Col 0.19 ABZR87_RS10995 NAD-dependent deacylase 0.84 ABZR87_RS16730 2-methylaconitate cis-trans isomerase PrpF low > 80
Bosea sp. OAE506 0.19 ABIE41_RS14930 Sir2 family NAD-dependent protein deacetylase 0.22 ABIE41_RS16535 4-oxalomesaconate tautomerase low > 77
Ralstonia solanacearum IBSBF1503 0.18 RALBFv3_RS15355 NAD-dependent deacylase 0.81 RALBFv3_RS22835 2-methylaconitate cis-trans isomerase PrpF low > 76
Ralstonia solanacearum UW163 0.18 UW163_RS12820 NAD-dependent deacylase 0.81 UW163_RS23455 2-methylaconitate cis-trans isomerase PrpF — —
Pseudomonas sp. S08-1 0.17 OH686_06015 NAD-dependent protein deacetylase of SIR2 family 0.80 OH686_01675 probable AcnD-accessory protein PrpF — —
Kangiella aquimarina DSM 16071 0.17 B158DRAFT_0796 NAD-dependent protein deacetylases, SIR2 family 0.76 B158DRAFT_1346 2-methylaconitate cis-trans isomerase low > 40
Pseudomonas putida KT2440 0.17 PP_5402 deacetylase of acetyl-CoA synthetase, NAD-dependent 0.84 PP_2337 aconitate isomerase low > 96
Acidovorax sp. GW101-3H11 0.15 Ac3H11_4140 NAD-dependent protein deacetylase of SIR2 family 0.75 Ac3H11_2325 2-methylaconitate cis-trans isomerase — —
Alteromonas macleodii MIT1002 0.15 MIT1002_02145 NAD-dependent protein deacylase 0.71 MIT1002_03132 3-methylitaconate isomerase — —
Azospirillum sp. SherDot2 0.14 MPMX19_02648 NAD-dependent protein deacylase 0.22 MPMX19_03556 Putative isomerase YbhH low > 112
Azospirillum brasilense Sp245 0.14 AZOBR_RS00620 NAD-dependent deacetylase 0.72 AZOBR_RS24310 3-methylitaconate isomerase low > 97
Sphingomonas koreensis DSMZ 15582 0.14 Ga0059261_1943 NAD-dependent protein deacetylases, SIR2 family 0.24 Ga0059261_0523 Uncharacterized protein conserved in bacteria low > 68
Shewanella oneidensis MR-1 0.13 SO1938 cobB cobB protein (NCBI ptt file) 0.81 SO0342 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.13 Shew_1662 NAD-dependent deacetylase (RefSeq) 0.73 Shew_1823 putative AcnD-accessory protein PrpF (RefSeq) low > 60
Shewanella sp. ANA-3 0.13 Shewana3_1717 NAD-dependent deacetylase (RefSeq) 0.81 Shewana3_3828 methylitaconate delta2-delta3-isomerase (RefSeq) — —
Magnetospirillum magneticum AMB-1 0.13 AMB_RS04415 NAD-dependent protein deacylase 0.22 AMB_RS01270 4-oxalomesaconate tautomerase low > 64
Escherichia fergusonii Becca 0.13 EFB2_02855 NAD-dependent protein deacylase 0.22 EFB2_03337 Putative isomerase YbhH low > 86
Escherichia coli Nissle 1917 0.13 ECOLIN_RS06455 Sir2 family NAD+-dependent deacetylase 0.22 ECOLIN_RS04095 4-oxalomesaconate tautomerase — —
Escherichia coli ECRC99 0.13 KEDOAH_24315 cobB NAD-dependent protein deacylase 0.22 KEDOAH_21300 ybhH 4-oxalomesaconate tautomerase — —
Escherichia coli ECOR27 0.13 NOLOHH_20965 cobB NAD-dependent protein deacylase 0.22 NOLOHH_23095 ybhH 4-oxalomesaconate tautomerase — —
Escherichia coli ECRC101 0.13 OKFHMN_03440 cobB NAD-dependent protein deacylase 0.22 OKFHMN_06665 ybhH 4-oxalomesaconate tautomerase — —
Escherichia coli ECRC101 0.13 MCAODC_22800 cobB NAD-dependent protein deacylase 0.22 MCAODC_25885 ybhH 4-oxalomesaconate tautomerase — —
Escherichia coli ECRC102 0.13 NIAGMN_24390 cobB NAD-dependent protein deacylase 0.22 NIAGMN_04715 ybhH 4-oxalomesaconate tautomerase — —
Escherichia coli ECRC98 0.13 JDDGAC_07100 cobB NAD-dependent protein deacylase 0.22 JDDGAC_10320 ybhH 4-oxalomesaconate tautomerase — —
Escherichia coli ECRC62 0.13 BNILDI_19130 cobB NAD-dependent protein deacylase 0.22 BNILDI_21090 ybhH 4-oxalomesaconate tautomerase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.13 OHPLBJKB_02546 NAD-dependent protein deacylase 0.22 OHPLBJKB_02944 4-oxalomesaconate tautomerase low > 73
Escherichia coli BW25113 0.12 b1120 cobB deacetylase of acs and cheY, regulates chemotaxis (NCBI) 0.22 b0769 ybhH hypothetical protein (NCBI) low > 76
Shewanella amazonensis SB2B 0.12 Sama_1435 NAD-dependent deacetylase (RefSeq) 0.73 Sama_3297 hypothetical protein (RefSeq) low > 62

Not shown: 23 genomes with orthologs for PS417_10540 only; 12 genomes with orthologs for PS417_21065 only